HEADER PATHOGENESIS-RELATED PROTEIN 08-NOV-96 1CFE TITLE P14A, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PATHOGENESIS-RELATED PROTEIN P14A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1 - 135; COMPND 5 SYNONYM: PATHOGENESIS-RELATED LEAF PROTEIN 6, ETHYLENE INDUCED COMPND 6 PROTEIN P1, P14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_TAXID: 4081; SOURCE 4 ORGAN: LEAF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PATHOGENESIS-RELATED PROTEIN, PR-1 PROTEINS, PLANT DEFENSE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.FERNANDEZ,T.SZYPERSKI,T.BRUYERE,P.RAMAGE,E.MOSINGER,K.WUTHRICH REVDAT 3 16-FEB-22 1CFE 1 REMARK REVDAT 2 24-FEB-09 1CFE 1 VERSN REVDAT 1 12-NOV-97 1CFE 0 JRNL AUTH C.FERNANDEZ,T.SZYPERSKI,T.BRUYERE,P.RAMAGE,E.MOSINGER, JRNL AUTH 2 K.WUTHRICH JRNL TITL NMR SOLUTION STRUCTURE OF THE PATHOGENESIS-RELATED PROTEIN JRNL TITL 2 P14A. JRNL REF J.MOL.BIOL. V. 266 576 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9067611 JRNL DOI 10.1006/JMBI.1996.0772 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.NIDERMAN,I.GENETET,T.BRUYERE,R.GEES,A.STINTZI,M.LEGRAND, REMARK 1 AUTH 2 B.FRITIG,E.MOSINGER REMARK 1 TITL PATHOGENESIS-RELATED PR-1 PROTEINS ARE ANTIFUNGAL. ISOLATION REMARK 1 TITL 2 AND CHARACTERIZATION OF THREE 14-KILODALTON PROTEINS OF REMARK 1 TITL 3 TOMATO AND OF A BASIC PR-1 OF TOBACCO WITH INHIBITORY REMARK 1 TITL 4 ACTIVITY AGAINST PHYTOPHTHORA INFESTANS REMARK 1 REF PLANT PHYSIOL. V. 108 17 1995 REMARK 1 REFN ISSN 0032-0889 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.LUCAS,A.CAMACHO HENRIQUEZ,F.LOTTSPEICH,A.HENSCHEN, REMARK 1 AUTH 2 H.L.SANGER REMARK 1 TITL AMINO ACID SEQUENCE OF THE PATHOGENESIS-RELATED LEAF PROTEIN REMARK 1 TITL 2 P14 FROM VIROID-INFECTED TOMATO REVEALS A NEW TYPE OF REMARK 1 TITL 3 STRUCTURALLY UNFAMILIAR PROTEINS REMARK 1 REF EMBO J. V. 4 2745 1985 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CFE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172291. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SEE PAPER *JRNL* REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AMX; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 CYS A 91 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 5 VAL A 86 CA - CB - CG1 ANGL. DEV. = 9.7 DEGREES REMARK 500 6 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 8 ARG A 100 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 11 VAL A 86 CA - CB - CG1 ANGL. DEV. = 9.9 DEGREES REMARK 500 11 CYS A 107 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 12 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 12 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 13 TYR A 7 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 13 CYS A 112 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 13 TYR A 135 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 15 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 15 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 17 ARG A 15 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 17 TYR A 80 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 17 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 18 CYS A 91 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 18 TYR A 135 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 -1.52 -149.29 REMARK 500 1 PRO A 22 -157.52 -81.52 REMARK 500 1 ALA A 27 -52.34 62.47 REMARK 500 1 ASP A 43 -61.26 -103.67 REMARK 500 1 CYS A 44 -13.73 106.29 REMARK 500 1 SER A 49 -87.93 42.56 REMARK 500 1 ASP A 61 39.23 -76.57 REMARK 500 1 GLU A 74 27.73 -72.01 REMARK 500 1 LYS A 90 81.53 49.09 REMARK 500 1 ARG A 92 61.29 -106.07 REMARK 500 1 HIS A 93 -70.43 -165.87 REMARK 500 1 TRP A 99 103.52 -44.33 REMARK 500 1 ASN A 114 29.85 -167.22 REMARK 500 2 SER A 3 174.31 64.41 REMARK 500 2 CYS A 44 46.65 79.27 REMARK 500 2 HIS A 48 140.40 61.91 REMARK 500 2 ALA A 51 64.09 37.99 REMARK 500 2 GLU A 74 42.47 -76.67 REMARK 500 2 ASN A 79 -104.35 -152.67 REMARK 500 2 TYR A 80 -32.75 177.70 REMARK 500 2 ASN A 83 40.52 38.42 REMARK 500 2 GLN A 84 -135.79 -156.32 REMARK 500 2 HIS A 93 -52.16 -135.16 REMARK 500 2 TRP A 99 103.80 -34.20 REMARK 500 2 TRP A 116 -111.40 45.67 REMARK 500 2 GLN A 132 -38.50 -139.94 REMARK 500 2 ARG A 133 135.60 85.81 REMARK 500 3 SER A 3 164.80 167.16 REMARK 500 3 HIS A 48 51.27 -92.53 REMARK 500 3 ASP A 61 44.95 -157.00 REMARK 500 3 GLU A 74 31.07 -71.91 REMARK 500 3 PRO A 76 20.33 -74.64 REMARK 500 3 SER A 77 -35.37 -133.77 REMARK 500 3 ASN A 79 -154.74 -151.16 REMARK 500 3 TYR A 80 -145.32 -126.77 REMARK 500 3 ALA A 81 -51.35 83.48 REMARK 500 3 CYS A 91 47.20 -100.99 REMARK 500 3 ARG A 92 72.33 -113.86 REMARK 500 3 HIS A 93 -49.04 -155.51 REMARK 500 3 TRP A 99 98.47 -59.55 REMARK 500 3 ASN A 101 44.43 -88.76 REMARK 500 4 PRO A 22 -162.68 -67.27 REMARK 500 4 ASP A 61 70.42 24.07 REMARK 500 4 THR A 63 -108.31 34.09 REMARK 500 4 TYR A 80 -140.61 -77.20 REMARK 500 4 ALA A 81 -54.14 83.35 REMARK 500 4 ASN A 83 60.17 79.44 REMARK 500 4 LYS A 90 43.51 -91.23 REMARK 500 4 CYS A 91 33.39 -93.17 REMARK 500 4 ARG A 92 44.15 -81.21 REMARK 500 REMARK 500 THIS ENTRY HAS 289 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 7 0.15 SIDE CHAIN REMARK 500 1 TYR A 36 0.07 SIDE CHAIN REMARK 500 1 ARG A 40 0.12 SIDE CHAIN REMARK 500 1 ARG A 65 0.14 SIDE CHAIN REMARK 500 1 TYR A 78 0.08 SIDE CHAIN REMARK 500 1 TYR A 80 0.17 SIDE CHAIN REMARK 500 1 ARG A 92 0.09 SIDE CHAIN REMARK 500 1 TYR A 94 0.07 SIDE CHAIN REMARK 500 1 ARG A 133 0.08 SIDE CHAIN REMARK 500 2 TYR A 7 0.15 SIDE CHAIN REMARK 500 2 ARG A 15 0.17 SIDE CHAIN REMARK 500 2 TYR A 80 0.07 SIDE CHAIN REMARK 500 2 PHE A 118 0.11 SIDE CHAIN REMARK 500 2 TYR A 135 0.09 SIDE CHAIN REMARK 500 3 ARG A 15 0.16 SIDE CHAIN REMARK 500 3 TYR A 36 0.07 SIDE CHAIN REMARK 500 3 TYR A 78 0.16 SIDE CHAIN REMARK 500 3 TYR A 80 0.13 SIDE CHAIN REMARK 500 3 ARG A 100 0.11 SIDE CHAIN REMARK 500 3 ARG A 104 0.12 SIDE CHAIN REMARK 500 3 ARG A 109 0.10 SIDE CHAIN REMARK 500 3 TYR A 135 0.09 SIDE CHAIN REMARK 500 4 TYR A 7 0.11 SIDE CHAIN REMARK 500 4 ARG A 32 0.08 SIDE CHAIN REMARK 500 4 TYR A 36 0.16 SIDE CHAIN REMARK 500 4 ARG A 75 0.15 SIDE CHAIN REMARK 500 4 TYR A 80 0.08 SIDE CHAIN REMARK 500 4 ARG A 104 0.09 SIDE CHAIN REMARK 500 4 ARG A 109 0.09 SIDE CHAIN REMARK 500 5 TYR A 7 0.08 SIDE CHAIN REMARK 500 5 TYR A 36 0.07 SIDE CHAIN REMARK 500 5 ARG A 40 0.10 SIDE CHAIN REMARK 500 5 ARG A 75 0.09 SIDE CHAIN REMARK 500 5 TYR A 78 0.10 SIDE CHAIN REMARK 500 5 ARG A 104 0.09 SIDE CHAIN REMARK 500 5 ARG A 133 0.11 SIDE CHAIN REMARK 500 6 ARG A 40 0.17 SIDE CHAIN REMARK 500 6 TYR A 78 0.14 SIDE CHAIN REMARK 500 6 ARG A 92 0.15 SIDE CHAIN REMARK 500 6 ARG A 109 0.15 SIDE CHAIN REMARK 500 6 ARG A 111 0.11 SIDE CHAIN REMARK 500 6 PHE A 118 0.12 SIDE CHAIN REMARK 500 6 TYR A 135 0.16 SIDE CHAIN REMARK 500 7 TYR A 80 0.11 SIDE CHAIN REMARK 500 7 ARG A 100 0.09 SIDE CHAIN REMARK 500 7 ARG A 104 0.14 SIDE CHAIN REMARK 500 7 ARG A 109 0.10 SIDE CHAIN REMARK 500 7 ARG A 133 0.08 SIDE CHAIN REMARK 500 7 TYR A 135 0.07 SIDE CHAIN REMARK 500 8 ARG A 32 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 134 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1CFE A 1 135 UNP P04284 PR06_LYCES 25 159 SEQRES 1 A 135 GLN ASN SER PRO GLN ASP TYR LEU ALA VAL HIS ASN ASP SEQRES 2 A 135 ALA ARG ALA GLN VAL GLY VAL GLY PRO MET SER TRP ASP SEQRES 3 A 135 ALA ASN LEU ALA SER ARG ALA GLN ASN TYR ALA ASN SER SEQRES 4 A 135 ARG ALA GLY ASP CYS ASN LEU ILE HIS SER GLY ALA GLY SEQRES 5 A 135 GLU ASN LEU ALA LYS GLY GLY GLY ASP PHE THR GLY ARG SEQRES 6 A 135 ALA ALA VAL GLN LEU TRP VAL SER GLU ARG PRO SER TYR SEQRES 7 A 135 ASN TYR ALA THR ASN GLN CYS VAL GLY GLY LYS LYS CYS SEQRES 8 A 135 ARG HIS TYR THR GLN VAL VAL TRP ARG ASN SER VAL ARG SEQRES 9 A 135 LEU GLY CYS GLY ARG ALA ARG CYS ASN ASN GLY TRP TRP SEQRES 10 A 135 PHE ILE SER CYS ASN TYR ASP PRO VAL GLY ASN TRP ILE SEQRES 11 A 135 GLY GLN ARG PRO TYR HELIX 1 H1 PRO A 4 GLN A 17 1 14 HELIX 2 H2 ALA A 27 ARG A 40 1 14 HELIX 3 H3 GLY A 64 VAL A 72 1 9 HELIX 4 310 SER A 73 ARG A 75 5 3 HELIX 5 H4 HIS A 93 VAL A 98 1 6 SHEET 1 B 4 SER A 24 TRP A 25 0 SHEET 2 B 4 ARG A 104 ARG A 111 1 N LEU A 105 O SER A 24 SHEET 3 B 4 TRP A 117 ASP A 124 -1 N SER A 120 O GLY A 108 SHEET 4 B 4 GLU A 53 GLY A 58 -1 N ALA A 56 O ILE A 119 SSBOND 1 CYS A 44 CYS A 112 1555 1555 2.10 SSBOND 2 CYS A 85 CYS A 91 1555 1555 2.08 SSBOND 3 CYS A 107 CYS A 121 1555 1555 2.07 CISPEP 1 ASP A 124 PRO A 125 1 -19.62 CISPEP 2 ASP A 124 PRO A 125 2 -6.35 CISPEP 3 ASP A 124 PRO A 125 3 -10.29 CISPEP 4 ASP A 124 PRO A 125 4 -20.57 CISPEP 5 ASP A 124 PRO A 125 5 -13.19 CISPEP 6 ASP A 124 PRO A 125 6 -21.05 CISPEP 7 ASP A 124 PRO A 125 7 -16.34 CISPEP 8 ASP A 124 PRO A 125 8 -17.68 CISPEP 9 ASP A 124 PRO A 125 9 -11.01 CISPEP 10 ASP A 124 PRO A 125 10 -20.34 CISPEP 11 ASP A 124 PRO A 125 11 -13.34 CISPEP 12 ASP A 124 PRO A 125 12 -17.19 CISPEP 13 ASP A 124 PRO A 125 13 -13.49 CISPEP 14 ASP A 124 PRO A 125 14 -11.99 CISPEP 15 ASP A 124 PRO A 125 15 -15.08 CISPEP 16 ASP A 124 PRO A 125 16 -9.50 CISPEP 17 ASP A 124 PRO A 125 17 -20.09 CISPEP 18 ASP A 124 PRO A 125 18 -16.74 CISPEP 19 ASP A 124 PRO A 125 19 -17.93 CISPEP 20 ASP A 124 PRO A 125 20 -16.40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20