HEADER INTEGRAL MEMBRANE PROTEIN 11-MAR-97 1AFO TITLE DIMERIC TRANSMEMBRANE DOMAIN OF HUMAN GLYCOPHORIN A, NMR, 20 TITLE 2 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPHORIN A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRANSMEMBRANE PEPTIDE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: MG-T7; SOURCE 6 ORGAN: PLASMA; SOURCE 7 CELL: ERYTHROCYTE; SOURCE 8 CELLULAR_LOCATION: PLASMA MEMBRANE; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: MG-T7; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS INTEGRAL MEMBRANE PROTEIN, HUMAN GLYCOPHORIN A, TRANSMEMBRANE HELIX KEYWDS 2 INTERACTIONS, MEMBRANE PROTEIN FOLDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.R.MACKENZIE,J.H.PRESTEGARD,D.M.ENGELMAN REVDAT 4 27-OCT-21 1AFO 1 REMARK REVDAT 3 24-FEB-09 1AFO 1 VERSN REVDAT 2 01-APR-03 1AFO 1 JRNL REVDAT 1 17-SEP-97 1AFO 0 JRNL AUTH K.R.MACKENZIE,J.H.PRESTEGARD,D.M.ENGELMAN JRNL TITL A TRANSMEMBRANE HELIX DIMER: STRUCTURE AND IMPLICATIONS. JRNL REF SCIENCE V. 276 131 1997 JRNL REFN ISSN 0036-8075 JRNL PMID 9082985 JRNL DOI 10.1126/SCIENCE.276.5309.131 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.R.MACKENZIE REMARK 1 TITL STRUCTURE DETERMINATION OF THE DIMERIC MEMBRANE SPANNING REMARK 1 TITL 2 DOMAIN OF GLYCOPHORIN A IN DETERGENT MICELLES BY TRIPLE REMARK 1 TITL 3 RESONANCE NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY REMARK 1 REF THESIS, YALE UNIVERSITY 1996 REMARK 1 PUBL NEW HAVEN : YALE UNIVERSITY (THESIS) REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH K.R.MACKENZIE,J.H.PRESTEGARD,D.M.ENGELMAN REMARK 1 TITL LEUCINE SIDE-CHAIN ROTAMERS IN A GLYCOPHORIN A TRANSMEMBRANE REMARK 1 TITL 2 PEPTIDE AS REVEALED BY THREE-BOND CARBON-CARBON COUPLINGS REMARK 1 TITL 3 AND 13C CHEMICAL SHIFTS REMARK 1 REF J.BIOMOL.NMR V. 7 256 1996 REMARK 1 REFN ISSN 0925-2738 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AFO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170757. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA; CBCACONH; HCCH-TOCSY; 15N REMARK 210 NOESY-HSQC; 13C NOESY-HSQC; HNHA; REMARK 210 SPIN-ECHO DIFF CT HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : OMEGA; VARIAN REMARK 210 SPECTROMETER MANUFACTURER : GE; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING HYBRID REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 38 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 64 -165.82 46.11 REMARK 500 1 ALA A 65 31.32 -163.00 REMARK 500 1 HIS A 67 -53.27 170.12 REMARK 500 1 SER A 69 174.92 51.29 REMARK 500 1 ILE A 99 -112.97 -82.55 REMARK 500 1 LYS A 100 -174.81 47.63 REMARK 500 1 HIS B 66 114.11 77.93 REMARK 500 1 HIS B 67 38.02 168.20 REMARK 500 1 PHE B 68 -88.24 -141.98 REMARK 500 1 GLU B 72 -73.71 -66.30 REMARK 500 1 ILE B 99 102.18 94.28 REMARK 500 2 GLN A 63 143.07 179.89 REMARK 500 2 ALA A 65 60.50 64.15 REMARK 500 2 HIS A 67 74.19 -152.35 REMARK 500 2 PHE A 68 84.37 -58.74 REMARK 500 2 SER A 69 -152.28 -104.06 REMARK 500 2 GLU A 70 -55.38 168.68 REMARK 500 2 PRO A 71 83.54 -58.12 REMARK 500 2 GLU A 72 -72.18 -67.51 REMARK 500 2 LEU B 64 159.23 67.71 REMARK 500 2 ALA B 65 68.97 -165.87 REMARK 500 2 SER B 69 -152.33 -150.57 REMARK 500 2 GLU B 70 98.23 73.34 REMARK 500 2 PRO B 71 58.48 -62.28 REMARK 500 2 GLU B 72 -74.95 -65.15 REMARK 500 2 LYS B 100 -162.83 -115.08 REMARK 500 3 LEU A 64 173.51 -53.98 REMARK 500 3 ALA A 65 104.28 -166.49 REMARK 500 3 HIS A 66 -148.84 -70.32 REMARK 500 3 HIS A 67 -175.60 -65.94 REMARK 500 3 SER A 69 157.82 -46.62 REMARK 500 3 GLU A 72 -74.68 -63.21 REMARK 500 3 HIS B 67 -169.49 -163.84 REMARK 500 3 PHE B 68 -56.15 75.94 REMARK 500 3 PRO B 71 106.43 -59.72 REMARK 500 4 ALA A 65 24.52 -144.24 REMARK 500 4 HIS A 66 77.86 51.41 REMARK 500 4 HIS A 67 -55.30 -158.88 REMARK 500 4 PHE A 68 -62.92 68.38 REMARK 500 4 SER A 69 48.12 76.17 REMARK 500 4 GLU A 70 101.54 55.46 REMARK 500 4 GLU A 72 -70.77 -59.29 REMARK 500 4 GLN B 63 167.03 61.01 REMARK 500 4 LEU B 64 -28.80 175.80 REMARK 500 4 HIS B 66 63.82 -154.74 REMARK 500 4 HIS B 67 69.29 -101.28 REMARK 500 4 PHE B 68 90.23 -67.17 REMARK 500 4 SER B 69 109.37 75.90 REMARK 500 4 GLU B 72 -74.76 -48.54 REMARK 500 4 ILE B 99 -131.52 -79.71 REMARK 500 REMARK 500 THIS ENTRY HAS 191 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 96 0.31 SIDE CHAIN REMARK 500 1 ARG A 97 0.24 SIDE CHAIN REMARK 500 1 ARG B 96 0.25 SIDE CHAIN REMARK 500 1 ARG B 97 0.31 SIDE CHAIN REMARK 500 2 ARG A 96 0.23 SIDE CHAIN REMARK 500 2 ARG A 97 0.18 SIDE CHAIN REMARK 500 2 ARG B 96 0.19 SIDE CHAIN REMARK 500 2 ARG B 97 0.31 SIDE CHAIN REMARK 500 3 ARG A 96 0.20 SIDE CHAIN REMARK 500 3 ARG A 97 0.27 SIDE CHAIN REMARK 500 3 ARG B 96 0.32 SIDE CHAIN REMARK 500 3 ARG B 97 0.30 SIDE CHAIN REMARK 500 4 ARG A 96 0.12 SIDE CHAIN REMARK 500 4 ARG A 97 0.31 SIDE CHAIN REMARK 500 4 ARG B 96 0.30 SIDE CHAIN REMARK 500 4 ARG B 97 0.24 SIDE CHAIN REMARK 500 5 ARG A 96 0.29 SIDE CHAIN REMARK 500 5 ARG A 97 0.17 SIDE CHAIN REMARK 500 5 ARG B 96 0.30 SIDE CHAIN REMARK 500 5 ARG B 97 0.23 SIDE CHAIN REMARK 500 6 ARG A 96 0.32 SIDE CHAIN REMARK 500 6 ARG A 97 0.20 SIDE CHAIN REMARK 500 6 ARG B 96 0.27 SIDE CHAIN REMARK 500 6 ARG B 97 0.26 SIDE CHAIN REMARK 500 7 ARG A 96 0.27 SIDE CHAIN REMARK 500 7 ARG A 97 0.24 SIDE CHAIN REMARK 500 7 ARG B 96 0.28 SIDE CHAIN REMARK 500 7 ARG B 97 0.28 SIDE CHAIN REMARK 500 8 ARG A 96 0.24 SIDE CHAIN REMARK 500 8 ARG A 97 0.32 SIDE CHAIN REMARK 500 8 ARG B 96 0.31 SIDE CHAIN REMARK 500 8 ARG B 97 0.30 SIDE CHAIN REMARK 500 9 ARG A 96 0.17 SIDE CHAIN REMARK 500 9 ARG A 97 0.28 SIDE CHAIN REMARK 500 9 ARG B 96 0.30 SIDE CHAIN REMARK 500 9 ARG B 97 0.19 SIDE CHAIN REMARK 500 10 ARG A 96 0.23 SIDE CHAIN REMARK 500 10 ARG A 97 0.25 SIDE CHAIN REMARK 500 10 ARG B 96 0.32 SIDE CHAIN REMARK 500 10 ARG B 97 0.28 SIDE CHAIN REMARK 500 11 ARG A 96 0.19 SIDE CHAIN REMARK 500 11 ARG A 97 0.27 SIDE CHAIN REMARK 500 11 ARG B 96 0.24 SIDE CHAIN REMARK 500 11 ARG B 97 0.23 SIDE CHAIN REMARK 500 12 ARG A 96 0.30 SIDE CHAIN REMARK 500 12 ARG A 97 0.27 SIDE CHAIN REMARK 500 12 ARG B 96 0.31 SIDE CHAIN REMARK 500 12 ARG B 97 0.32 SIDE CHAIN REMARK 500 13 ARG A 96 0.28 SIDE CHAIN REMARK 500 13 ARG A 97 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 79 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1AFO A 62 101 UNP P02724 GLPA_HUMAN 81 120 DBREF 1AFO B 62 101 UNP P02724 GLPA_HUMAN 81 120 SEQRES 1 A 40 VAL GLN LEU ALA HIS HIS PHE SER GLU PRO GLU ILE THR SEQRES 2 A 40 LEU ILE ILE PHE GLY VAL MET ALA GLY VAL ILE GLY THR SEQRES 3 A 40 ILE LEU LEU ILE SER TYR GLY ILE ARG ARG LEU ILE LYS SEQRES 4 A 40 LYS SEQRES 1 B 40 VAL GLN LEU ALA HIS HIS PHE SER GLU PRO GLU ILE THR SEQRES 2 B 40 LEU ILE ILE PHE GLY VAL MET ALA GLY VAL ILE GLY THR SEQRES 3 B 40 ILE LEU LEU ILE SER TYR GLY ILE ARG ARG LEU ILE LYS SEQRES 4 B 40 LYS HELIX 1 1 GLU A 72 LEU A 98 1 27 HELIX 2 2 GLU B 72 LEU B 98 1 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20