HEADER TRANSFERASE/INHIBITOR 29-MAR-21 7M7V TITLE CRYSTAL STRUCTURE OF MTB PKS13 THIOESTERASE DOMAIN IN COMPLEX WITH TITLE 2 COMPOUND 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE PKS13; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TERMINATION POLYKETIDE SYNTHASE; COMPND 5 EC: 2.3.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PKS13, RV3800C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THIOESTERASE DOMAIN, COMPOUND 6 COMPLEX, PKS13, MYCOBACTERIUM, KEYWDS 2 POLYKETIDE SYNTHASE, MYCOLIC ACID CONDENSATION, ALPHA/BETA KEYWDS 3 HYDROLASE, THIOESTERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX, KEYWDS 4 TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.AGGARWAL,J.C.SACCHETTINI REVDAT 2 18-OCT-23 7M7V 1 REMARK REVDAT 1 16-FEB-22 7M7V 0 JRNL AUTH C.WILSON,P.RAY,F.ZUCCOTTO,J.HERNANDEZ,A.AGGARWAL, JRNL AUTH 2 C.MACKENZIE,N.CALDWELL,M.TAYLOR,M.HUGGETT,M.MATHIESON, JRNL AUTH 3 D.MURUGESAN,A.SMITH,S.DAVIS,M.COCCO,M.K.PARAI,A.ACHARYA, JRNL AUTH 4 F.TAMAKI,P.SCULLION,O.EPEMOLU,J.RILEY,L.STOJANOVSKI, JRNL AUTH 5 E.M.LOPEZ-ROMAN,P.A.TORRES-GOMEZ,A.M.TOLEDO, JRNL AUTH 6 L.GUIJARRO-LOPEZ,I.CAMINO,C.A.ENGELHART,D.SCHNAPPINGER, JRNL AUTH 7 L.M.MASSOUDI,A.LENAERTS,G.T.ROBERTSON,C.WALPOLE,D.MATTHEWS, JRNL AUTH 8 D.FLOYD,J.C.SACCHETTINI,K.D.READ,L.ENCINAS,R.H.BATES, JRNL AUTH 9 S.R.GREEN,P.G.WYATT JRNL TITL OPTIMIZATION OF TAM16, A BENZOFURAN THAT INHIBITS THE JRNL TITL 2 THIOESTERASE ACTIVITY OF PKS13; EVALUATION TOWARD A JRNL TITL 3 PRECLINICAL CANDIDATE FOR A NOVEL ANTITUBERCULOSIS CLINICAL JRNL TITL 4 TARGET. JRNL REF J.MED.CHEM. V. 65 409 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 34910486 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01586 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 25909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5300 - 4.7600 0.99 2947 151 0.1908 0.1978 REMARK 3 2 4.7600 - 3.7800 0.89 2552 124 0.1698 0.2188 REMARK 3 3 3.7800 - 3.3000 0.95 2659 134 0.2256 0.2715 REMARK 3 4 3.3000 - 3.0000 1.00 2772 145 0.2367 0.2957 REMARK 3 5 3.0000 - 2.7900 1.00 2761 160 0.2553 0.3204 REMARK 3 6 2.7900 - 2.6200 1.00 2740 160 0.2822 0.3352 REMARK 3 7 2.6200 - 2.4900 1.00 2748 141 0.3093 0.4091 REMARK 3 8 2.4900 - 2.3800 0.99 2729 149 0.3192 0.3991 REMARK 3 9 2.3800 - 2.2900 0.98 2697 140 0.3088 0.3645 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.343 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.423 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4196 REMARK 3 ANGLE : 0.942 5721 REMARK 3 CHIRALITY : 0.057 614 REMARK 3 PLANARITY : 0.007 753 REMARK 3 DIHEDRAL : 14.010 618 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1454 THROUGH 1590 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5914 30.1776 20.3667 REMARK 3 T TENSOR REMARK 3 T11: 0.4047 T22: 0.3607 REMARK 3 T33: 0.3838 T12: -0.0381 REMARK 3 T13: -0.0076 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.8097 L22: 0.7315 REMARK 3 L33: 1.4097 L12: 0.0077 REMARK 3 L13: 0.6168 L23: 0.2523 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: -0.1589 S13: 0.0090 REMARK 3 S21: 0.1338 S22: 0.0098 S23: 0.1550 REMARK 3 S31: 0.0416 S32: -0.0711 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1591 THROUGH 1626 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4546 18.3280 10.9513 REMARK 3 T TENSOR REMARK 3 T11: 0.5802 T22: 0.7555 REMARK 3 T33: 0.4580 T12: -0.0823 REMARK 3 T13: -0.0263 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.5201 L22: 0.0283 REMARK 3 L33: 0.1831 L12: 0.0002 REMARK 3 L13: -0.0009 L23: -0.0696 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: -0.6352 S13: -0.5326 REMARK 3 S21: -0.7122 S22: 0.3711 S23: 0.4254 REMARK 3 S31: -0.2245 S32: 0.1128 S33: 0.0378 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1627 THROUGH 1726 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0535 36.2141 12.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.3600 T22: 0.3604 REMARK 3 T33: 0.2892 T12: -0.0078 REMARK 3 T13: -0.0117 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 3.2238 L22: 2.0648 REMARK 3 L33: 1.5142 L12: -0.1962 REMARK 3 L13: 0.3168 L23: -0.5640 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: 0.1597 S13: 0.1609 REMARK 3 S21: -0.1774 S22: 0.0341 S23: 0.1531 REMARK 3 S31: 0.0227 S32: 0.0130 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1452 THROUGH 1490 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6595 72.5751 11.5071 REMARK 3 T TENSOR REMARK 3 T11: 0.4727 T22: 0.4298 REMARK 3 T33: 0.5378 T12: 0.0072 REMARK 3 T13: -0.0859 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.2114 L22: 0.9982 REMARK 3 L33: 1.4194 L12: -0.4093 REMARK 3 L13: -1.2217 L23: -0.0768 REMARK 3 S TENSOR REMARK 3 S11: -0.1869 S12: -0.2005 S13: 0.5234 REMARK 3 S21: 0.4158 S22: 0.2548 S23: 0.0611 REMARK 3 S31: -0.3854 S32: 0.0954 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1491 THROUGH 1506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4977 71.7531 7.8633 REMARK 3 T TENSOR REMARK 3 T11: 0.5342 T22: 0.5463 REMARK 3 T33: 0.5624 T12: -0.0043 REMARK 3 T13: 0.0019 T23: 0.0930 REMARK 3 L TENSOR REMARK 3 L11: 0.7780 L22: 0.4961 REMARK 3 L33: 0.5958 L12: 0.0531 REMARK 3 L13: -0.5680 L23: -0.1456 REMARK 3 S TENSOR REMARK 3 S11: 0.4022 S12: 0.0764 S13: 0.6002 REMARK 3 S21: 0.2529 S22: -0.2889 S23: -0.3646 REMARK 3 S31: -0.4977 S32: 0.7953 S33: -0.0043 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1507 THROUGH 1644 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6686 67.0923 -6.7270 REMARK 3 T TENSOR REMARK 3 T11: 0.4235 T22: 0.4137 REMARK 3 T33: 0.4891 T12: -0.0364 REMARK 3 T13: 0.0116 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.9253 L22: 1.8851 REMARK 3 L33: 2.2451 L12: 0.0824 REMARK 3 L13: 0.3395 L23: -1.0684 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: 0.1356 S13: -0.0005 REMARK 3 S21: -0.2100 S22: 0.0418 S23: -0.0379 REMARK 3 S31: 0.2379 S32: -0.1032 S33: 0.0006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1645 THROUGH 1664 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7041 55.4343 3.4442 REMARK 3 T TENSOR REMARK 3 T11: 0.5656 T22: 0.4745 REMARK 3 T33: 0.5642 T12: 0.0379 REMARK 3 T13: -0.0105 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.1612 L22: 0.6614 REMARK 3 L33: 0.8219 L12: -0.1921 REMARK 3 L13: -0.0967 L23: -0.5079 REMARK 3 S TENSOR REMARK 3 S11: 0.2962 S12: 0.0409 S13: 0.3553 REMARK 3 S21: -0.3672 S22: 0.0585 S23: 0.0275 REMARK 3 S31: 0.1481 S32: -0.1140 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1665 THROUGH 1689 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3944 53.0620 -1.2992 REMARK 3 T TENSOR REMARK 3 T11: 0.6409 T22: 0.4554 REMARK 3 T33: 0.5510 T12: -0.0720 REMARK 3 T13: -0.0195 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.2456 L22: 0.3768 REMARK 3 L33: 1.2271 L12: 0.2583 REMARK 3 L13: 0.1570 L23: -0.1244 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: 0.9426 S13: -1.3823 REMARK 3 S21: -0.6778 S22: 0.1365 S23: 0.1361 REMARK 3 S31: 0.2873 S32: 0.4864 S33: 0.0018 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1690 THROUGH 1726 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8329 59.4131 15.9146 REMARK 3 T TENSOR REMARK 3 T11: 0.5341 T22: 0.3959 REMARK 3 T33: 0.4046 T12: 0.0412 REMARK 3 T13: -0.0048 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.9417 L22: 1.5714 REMARK 3 L33: 1.4852 L12: 0.5573 REMARK 3 L13: -1.0454 L23: 0.0621 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: -0.1977 S13: 0.1125 REMARK 3 S21: 0.7639 S22: -0.0621 S23: 0.3594 REMARK 3 S31: 0.2982 S32: 0.0466 S33: -0.0042 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 1454 THROUGH 1507 REMARK 3 OR (RESID 1508 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 1509 THROUGH 1523 OR (RESID 1524 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 1525 THROUGH 1567 OR REMARK 3 (RESID 1568 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 1569 OR (RESID 1570 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 1571 OR (RESID 1572 THROUGH 1574 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 1575 OR (RESID REMARK 3 1576 THROUGH 1577 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 1578 THROUGH 1586 OR (RESID 1587 REMARK 3 THROUGH 1588 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 1589 OR RESID 1595 THROUGH 1596 OR (RESID REMARK 3 1597 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 1598 OR REMARK 3 (RESID 1599 THROUGH 1601 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 1602 THROUGH 1607 OR (RESID 1608 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 1609 THROUGH REMARK 3 1646 OR (RESID 1647 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 1648 OR (RESID 1649 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 1650 THROUGH 1661 OR (RESID 1662 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 1663 THROUGH REMARK 3 1664 OR (RESID 1665 THROUGH 1667 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 1668 THROUGH 1669 OR REMARK 3 (RESID 1670 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 1671 THROUGH 1724 OR (RESID 1725 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 1726)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 1454 THROUGH 1503 REMARK 3 OR (RESID 1504 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 1505 THROUGH 1589 OR RESID 1595 THROUGH REMARK 3 1600 OR (RESID 1601 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 1602 THROUGH 1611 OR (RESID 1612 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 1613 OR (RESID REMARK 3 1614 THROUGH 1620 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 1621 OR (RESID 1625 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 1626 THROUGH 1628 OR (RESID 1629 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 1630 OR (RESID REMARK 3 1631 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 1632 REMARK 3 THROUGH 1651 OR (RESID 1652 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 1653 THROUGH 1684 OR (RESID REMARK 3 1685 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 1686 REMARK 3 THROUGH 1687 OR (RESID 1688 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 1689 THROUGH 1726)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000255837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 48.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.15140 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.73800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5V3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 2.0-1.8 M AMMONIUM REMARK 280 SULFATE, 2%-5% V/V PPG P400, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.98500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.98500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1448 REMARK 465 ASN A 1449 REMARK 465 ALA A 1450 REMARK 465 GLN A 1451 REMARK 465 ILE A 1452 REMARK 465 ASP A 1453 REMARK 465 VAL A 1592 REMARK 465 THR A 1593 REMARK 465 ILE A 1594 REMARK 465 GLY A 1622 REMARK 465 VAL A 1623 REMARK 465 GLN A 1624 REMARK 465 THR A 1727 REMARK 465 SER A 1728 REMARK 465 GLU A 1729 REMARK 465 VAL A 1730 REMARK 465 GLY A 1731 REMARK 465 LYS A 1732 REMARK 465 GLN A 1733 REMARK 465 SER B 1448 REMARK 465 ASN B 1449 REMARK 465 ALA B 1450 REMARK 465 GLN B 1451 REMARK 465 PHE B 1590 REMARK 465 ASN B 1591 REMARK 465 VAL B 1592 REMARK 465 THR B 1727 REMARK 465 SER B 1728 REMARK 465 GLU B 1729 REMARK 465 VAL B 1730 REMARK 465 GLY B 1731 REMARK 465 LYS B 1732 REMARK 465 GLN B 1733 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1464 CG CD OE1 OE2 REMARK 470 GLU A1504 CG CD OE1 OE2 REMARK 470 GLU A1566 CG CD OE1 OE2 REMARK 470 GLU A1567 CG CD OE1 OE2 REMARK 470 PHE A1590 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A1591 CG OD1 ND2 REMARK 470 GLU A1600 CG CD OE1 OE2 REMARK 470 GLN A1601 CG CD OE1 NE2 REMARK 470 GLU A1604 CG CD OE1 OE2 REMARK 470 ARG A1612 CG CD NE CZ NH1 NH2 REMARK 470 VAL A1614 CG1 CG2 REMARK 470 LEU A1615 CG CD1 CD2 REMARK 470 ASP A1616 CG OD1 OD2 REMARK 470 VAL A1618 CG1 CG2 REMARK 470 SER A1619 OG REMARK 470 GLN A1620 CG CD OE1 NE2 REMARK 470 ILE A1625 CG1 CG2 CD1 REMARK 470 ILE A1629 CG1 CG2 CD1 REMARK 470 GLU A1631 CG CD OE1 OE2 REMARK 470 ASP A1652 CG OD1 OD2 REMARK 470 ASP A1666 CG OD1 OD2 REMARK 470 MET A1669 CG SD CE REMARK 470 GLU A1685 CG CD OE1 OE2 REMARK 470 SER A1688 OG REMARK 470 ILE B1452 CG1 CG2 CD1 REMARK 470 ASP B1453 CG OD1 OD2 REMARK 470 GLU B1464 CG CD OE1 OE2 REMARK 470 GLU B1508 CG CD OE1 OE2 REMARK 470 ASP B1524 CG OD1 OD2 REMARK 470 GLU B1566 CG CD OE1 OE2 REMARK 470 GLU B1567 CG CD OE1 OE2 REMARK 470 ILE B1568 CG1 CG2 CD1 REMARK 470 GLN B1570 CG CD OE1 NE2 REMARK 470 LYS B1572 CG CD CE NZ REMARK 470 GLU B1573 CG CD OE1 OE2 REMARK 470 GLU B1574 CG CD OE1 OE2 REMARK 470 ARG B1576 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1577 CG CD CE NZ REMARK 470 GLU B1587 CG CD OE1 OE2 REMARK 470 LYS B1588 CG CD CE NZ REMARK 470 THR B1593 OG1 CG2 REMARK 470 ILE B1594 CG1 CG2 CD1 REMARK 470 ILE B1597 CG1 CG2 CD1 REMARK 470 TYR B1599 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B1600 CG CD OE1 OE2 REMARK 470 GLU B1604 CG CD OE1 OE2 REMARK 470 GLU B1608 CG CD OE1 OE2 REMARK 470 GLN B1647 CG CD OE1 NE2 REMARK 470 GLN B1649 CG CD OE1 NE2 REMARK 470 ARG B1662 CG CD NE CZ NH1 NH2 REMARK 470 ASP B1665 CG OD1 OD2 REMARK 470 ASP B1666 CG OD1 OD2 REMARK 470 MET B1669 CG SD CE REMARK 470 PHE B1670 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B1725 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 1468 O ALA A 1493 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1481 0.97 -69.80 REMARK 500 SER A1533 -132.54 60.15 REMARK 500 GLN A1570 48.78 -89.71 REMARK 500 PRO B1492 151.14 -49.95 REMARK 500 SER B1533 -133.29 60.44 REMARK 500 GLN B1570 48.06 -92.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Z3J A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Z3J B 1801 DBREF 7M7V A 1451 1733 UNP I6X8D2 PKS13_MYCTU 1451 1733 DBREF 7M7V B 1451 1733 UNP I6X8D2 PKS13_MYCTU 1451 1733 SEQADV 7M7V SER A 1448 UNP I6X8D2 EXPRESSION TAG SEQADV 7M7V ASN A 1449 UNP I6X8D2 EXPRESSION TAG SEQADV 7M7V ALA A 1450 UNP I6X8D2 EXPRESSION TAG SEQADV 7M7V SER B 1448 UNP I6X8D2 EXPRESSION TAG SEQADV 7M7V ASN B 1449 UNP I6X8D2 EXPRESSION TAG SEQADV 7M7V ALA B 1450 UNP I6X8D2 EXPRESSION TAG SEQRES 1 A 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 A 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 A 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 A 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 A 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 A 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 A 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 A 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 A 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 A 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 A 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 A 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 A 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 A 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 A 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 A 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 A 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 A 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 A 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 A 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 A 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 A 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN SEQRES 1 B 286 SER ASN ALA GLN ILE ASP GLY PHE VAL ARG THR LEU ARG SEQRES 2 B 286 ALA ARG PRO GLU ALA GLY GLY LYS VAL PRO VAL PHE VAL SEQRES 3 B 286 PHE HIS PRO ALA GLY GLY SER THR VAL VAL TYR GLU PRO SEQRES 4 B 286 LEU LEU GLY ARG LEU PRO ALA ASP THR PRO MET TYR GLY SEQRES 5 B 286 PHE GLU ARG VAL GLU GLY SER ILE GLU GLU ARG ALA GLN SEQRES 6 B 286 GLN TYR VAL PRO LYS LEU ILE GLU MET GLN GLY ASP GLY SEQRES 7 B 286 PRO TYR VAL LEU VAL GLY TRP SER LEU GLY GLY VAL LEU SEQRES 8 B 286 ALA TYR ALA CYS ALA ILE GLY LEU ARG ARG LEU GLY LYS SEQRES 9 B 286 ASP VAL ARG PHE VAL GLY LEU ILE ASP ALA VAL ARG ALA SEQRES 10 B 286 GLY GLU GLU ILE PRO GLN THR LYS GLU GLU ILE ARG LYS SEQRES 11 B 286 ARG TRP ASP ARG TYR ALA ALA PHE ALA GLU LYS THR PHE SEQRES 12 B 286 ASN VAL THR ILE PRO ALA ILE PRO TYR GLU GLN LEU GLU SEQRES 13 B 286 GLU LEU ASP ASP GLU GLY GLN VAL ARG PHE VAL LEU ASP SEQRES 14 B 286 ALA VAL SER GLN SER GLY VAL GLN ILE PRO ALA GLY ILE SEQRES 15 B 286 ILE GLU HIS GLN ARG THR SER TYR LEU ASP ASN ARG ALA SEQRES 16 B 286 ILE ASP THR ALA GLN ILE GLN PRO TYR ASP GLY HIS VAL SEQRES 17 B 286 THR LEU TYR MET ALA ASP ARG TYR HIS ASP ASP ALA ILE SEQRES 18 B 286 MET PHE GLU PRO ARG TYR ALA VAL ARG GLN PRO ASP GLY SEQRES 19 B 286 GLY TRP GLY GLU TYR VAL SER ASP LEU GLU VAL VAL PRO SEQRES 20 B 286 ILE GLY GLY GLU HIS ILE GLN ALA ILE ASP GLU PRO ILE SEQRES 21 B 286 ILE ALA LYS VAL GLY GLU HIS MET SER ARG ALA LEU GLY SEQRES 22 B 286 GLN ILE GLU ALA ASP ARG THR SER GLU VAL GLY LYS GLN HET Z3J A1801 30 HET Z3J B1801 30 HETNAM Z3J 5-HYDROXY-2-(4-HYDROXYPHENYL)-N-METHYL-4-[(2-OXA-6- HETNAM 2 Z3J AZASPIRO[3.4]OCTAN-6-YL)METHYL]-1-BENZOFURAN-3- HETNAM 3 Z3J CARBOXAMIDE FORMUL 3 Z3J 2(C23 H24 N2 O5) FORMUL 5 HOH *96(H2 O) HELIX 1 AA1 SER A 1480 VAL A 1483 5 4 HELIX 2 AA2 TYR A 1484 ARG A 1490 1 7 HELIX 3 AA3 SER A 1506 GLY A 1523 1 18 HELIX 4 AA4 SER A 1533 LEU A 1549 1 17 HELIX 5 AA5 THR A 1571 ASN A 1591 1 21 HELIX 6 AA6 PRO A 1598 GLU A 1603 1 6 HELIX 7 AA7 ASP A 1606 SER A 1621 1 16 HELIX 8 AA8 PRO A 1626 THR A 1645 1 20 HELIX 9 AA9 HIS A 1664 GLU A 1671 1 8 HELIX 10 AB1 PRO A 1672 VAL A 1676 5 5 HELIX 11 AB2 GLU A 1698 ALA A 1702 5 5 HELIX 12 AB3 PRO A 1706 ASP A 1725 1 20 HELIX 13 AB4 SER B 1480 VAL B 1483 5 4 HELIX 14 AB5 TYR B 1484 ARG B 1490 1 7 HELIX 15 AB6 SER B 1506 GLY B 1523 1 18 HELIX 16 AB7 SER B 1533 LEU B 1549 1 17 HELIX 17 AB8 THR B 1571 THR B 1589 1 19 HELIX 18 AB9 PRO B 1598 GLU B 1603 1 6 HELIX 19 AC1 ASP B 1606 GLN B 1620 1 15 HELIX 20 AC2 PRO B 1626 THR B 1645 1 20 HELIX 21 AC3 HIS B 1664 GLU B 1671 1 8 HELIX 22 AC4 PRO B 1672 VAL B 1676 5 5 HELIX 23 AC5 GLU B 1698 ALA B 1702 5 5 HELIX 24 AC6 PRO B 1706 ASP B 1725 1 20 SHEET 1 AA1 7 VAL A1456 ARG A1460 0 SHEET 2 AA1 7 MET A1497 PHE A1500 -1 O GLY A1499 N ARG A1457 SHEET 3 AA1 7 VAL A1471 PHE A1474 1 N VAL A1473 O PHE A1500 SHEET 4 AA1 7 TYR A1527 TRP A1532 1 O VAL A1530 N PHE A1472 SHEET 5 AA1 7 VAL A1553 ILE A1559 1 O GLY A1557 N LEU A1529 SHEET 6 AA1 7 VAL A1655 MET A1659 1 O TYR A1658 N LEU A1558 SHEET 7 AA1 7 LEU A1690 PRO A1694 1 O GLU A1691 N VAL A1655 SHEET 1 AA2 7 VAL B1456 ARG B1460 0 SHEET 2 AA2 7 MET B1497 PHE B1500 -1 O GLY B1499 N ARG B1457 SHEET 3 AA2 7 VAL B1471 PHE B1474 1 N VAL B1473 O PHE B1500 SHEET 4 AA2 7 TYR B1527 TRP B1532 1 O VAL B1530 N PHE B1472 SHEET 5 AA2 7 VAL B1553 ILE B1559 1 O GLY B1557 N LEU B1529 SHEET 6 AA2 7 VAL B1655 MET B1659 1 O THR B1656 N VAL B1556 SHEET 7 AA2 7 LEU B1690 PRO B1694 1 O GLU B1691 N LEU B1657 CISPEP 1 GLY A 1525 PRO A 1526 0 5.20 CISPEP 2 GLU A 1705 PRO A 1706 0 -0.79 CISPEP 3 GLY B 1525 PRO B 1526 0 4.39 CISPEP 4 GLU B 1705 PRO B 1706 0 -0.26 SITE 1 AC1 12 TYR A1582 GLN A1633 SER A1636 TYR A1637 SITE 2 AC1 12 ASN A1640 ASP A1644 TYR A1663 ALA A1667 SITE 3 AC1 12 PHE A1670 GLU A1671 TYR A1674 HOH A1925 SITE 1 AC2 12 TYR B1582 GLN B1633 SER B1636 TYR B1637 SITE 2 AC2 12 ASN B1640 ASP B1644 TYR B1663 ALA B1667 SITE 3 AC2 12 PHE B1670 GLU B1671 TYR B1674 HIS B1699 CRYST1 89.970 110.280 57.630 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011115 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017352 0.00000