HEADER SIGNALING PROTEIN 04-JAN-20 6TU9 TITLE THE ROR1 PSEUDOKINASE DOMAIN BOUND TO PONATINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: INACTIVE TYROSINE-PROTEIN KINASE TRANSMEMBRANE RECEPTOR COMPND 3 ROR1; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: NEUROTROPHIC TYROSINE KINASE,RECEPTOR-RELATED 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ROR1, NTRKR1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS RECEPTOR TRANSMEMBRANE KINASE PSEUDOKINASE SMALL-MOLECULE INHIBITOR, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MATHEA,F.PREUSS,D.CHATTERJEE,W.NIININEN,D.UNGUREANU,D.SHIN, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP REVDAT 4 24-JAN-24 6TU9 1 REMARK REVDAT 3 19-AUG-20 6TU9 1 JRNL REVDAT 2 05-AUG-20 6TU9 1 COMPND JRNL HETNAM REVDAT 1 22-JAN-20 6TU9 0 JRNL AUTH J.B.SHEETZ,S.MATHEA,H.KARVONEN,K.MALHOTRA,D.CHATTERJEE, JRNL AUTH 2 W.NIININEN,R.PERTTILA,F.PREUSS,K.SURESH,S.E.STAYROOK, JRNL AUTH 3 Y.TSUTSUI,R.RADHAKRISHNAN,D.UNGUREANU,S.KNAPP,M.A.LEMMON JRNL TITL STRUCTURAL INSIGHTS INTO PSEUDOKINASE DOMAINS OF RECEPTOR JRNL TITL 2 TYROSINE KINASES. JRNL REF MOL.CELL V. 79 390 2020 JRNL REFN ISSN 1097-2765 JRNL PMID 32619402 JRNL DOI 10.1016/J.MOLCEL.2020.06.018 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.550 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 49010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 2583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9800 - 5.0800 0.98 2628 140 0.1978 0.1885 REMARK 3 2 5.0800 - 4.0300 0.99 2608 154 0.1655 0.1757 REMARK 3 3 4.0300 - 3.5200 0.99 2588 141 0.1909 0.2251 REMARK 3 4 3.5200 - 3.2000 0.99 2585 152 0.2047 0.2360 REMARK 3 5 3.2000 - 2.9700 1.00 2615 138 0.2137 0.2842 REMARK 3 6 2.9700 - 2.8000 0.98 2553 159 0.2119 0.2530 REMARK 3 7 2.8000 - 2.6600 0.99 2560 156 0.2140 0.2612 REMARK 3 8 2.6600 - 2.5400 0.99 2597 130 0.2109 0.2594 REMARK 3 9 2.5400 - 2.4400 0.99 2584 149 0.2119 0.2895 REMARK 3 10 2.4400 - 2.3600 0.99 2581 115 0.2082 0.2649 REMARK 3 11 2.3600 - 2.2900 0.99 2617 140 0.2135 0.2827 REMARK 3 12 2.2900 - 2.2200 0.99 2575 152 0.2192 0.2458 REMARK 3 13 2.2200 - 2.1600 0.99 2544 153 0.2289 0.3102 REMARK 3 14 2.1600 - 2.1100 0.99 2626 133 0.2526 0.3235 REMARK 3 15 2.1100 - 2.0600 0.99 2564 157 0.2916 0.3330 REMARK 3 16 2.0600 - 2.0200 0.98 2558 132 0.3150 0.3565 REMARK 3 17 2.0200 - 1.9800 0.97 2526 131 0.3452 0.3966 REMARK 3 18 1.9800 - 1.9400 0.98 2518 151 0.3859 0.4204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.652 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4196 REMARK 3 ANGLE : 0.847 5711 REMARK 3 CHIRALITY : 0.055 621 REMARK 3 PLANARITY : 0.005 780 REMARK 3 DIHEDRAL : 17.501 628 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.0380 29.2720 -18.6885 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.2529 REMARK 3 T33: 0.3243 T12: 0.0126 REMARK 3 T13: -0.0492 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.4737 L22: 0.7343 REMARK 3 L33: 1.2564 L12: 0.3685 REMARK 3 L13: -0.7925 L23: -0.4589 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.0167 S13: -0.0100 REMARK 3 S21: 0.0090 S22: -0.0319 S23: -0.0095 REMARK 3 S31: -0.0463 S32: -0.0138 S33: -0.0043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6TU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 42.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GT4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 7.2, 12% PEG20K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.98450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 453 REMARK 465 SER A 454 REMARK 465 MET A 455 REMARK 465 LEU A 456 REMARK 465 ASN A 457 REMARK 465 ALA A 458 REMARK 465 TYR A 459 REMARK 465 PRO A 569 REMARK 465 HIS A 570 REMARK 465 SER A 571 REMARK 465 ASP A 572 REMARK 465 VAL A 573 REMARK 465 GLY A 574 REMARK 465 CYS A 575 REMARK 465 SER A 576 REMARK 465 SER A 577 REMARK 465 ASP A 578 REMARK 465 GLU A 579 REMARK 465 ASP A 580 REMARK 465 GLY A 581 REMARK 465 THR A 582 REMARK 465 VAL A 583 REMARK 465 LYS A 584 REMARK 465 SER A 585 REMARK 465 SER A 586 REMARK 465 VAL A 648 REMARK 465 GLN A 649 REMARK 465 SER A 650 REMARK 465 LYS A 651 REMARK 465 GLU A 750 REMARK 465 GLY A 751 REMARK 465 LEU A 752 REMARK 465 HIS A 753 REMARK 465 HIS A 754 REMARK 465 HIS A 755 REMARK 465 HIS A 756 REMARK 465 HIS A 757 REMARK 465 HIS A 758 REMARK 465 MET B 453 REMARK 465 SER B 454 REMARK 465 MET B 455 REMARK 465 LEU B 456 REMARK 465 ASN B 457 REMARK 465 ALA B 458 REMARK 465 TYR B 459 REMARK 465 LYS B 460 REMARK 465 PRO B 461 REMARK 465 LYS B 462 REMARK 465 SER B 463 REMARK 465 LYS B 464 REMARK 465 PRO B 495 REMARK 465 GLY B 496 REMARK 465 MET B 497 REMARK 465 ASP B 498 REMARK 465 ASP B 510 REMARK 465 PRO B 569 REMARK 465 HIS B 570 REMARK 465 SER B 571 REMARK 465 ASP B 572 REMARK 465 VAL B 573 REMARK 465 GLY B 574 REMARK 465 CYS B 575 REMARK 465 SER B 576 REMARK 465 SER B 577 REMARK 465 ASP B 578 REMARK 465 GLU B 579 REMARK 465 ASP B 580 REMARK 465 GLY B 581 REMARK 465 THR B 582 REMARK 465 VAL B 583 REMARK 465 LYS B 584 REMARK 465 SER B 585 REMARK 465 SER B 586 REMARK 465 SER B 637 REMARK 465 ARG B 638 REMARK 465 GLY B 751 REMARK 465 LEU B 752 REMARK 465 HIS B 753 REMARK 465 HIS B 754 REMARK 465 HIS B 755 REMARK 465 HIS B 756 REMARK 465 HIS B 757 REMARK 465 HIS B 758 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 460 CG CD CE NZ REMARK 470 LYS A 462 CG CD CE NZ REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 PHE A 484 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 486 CD CE NZ REMARK 470 LYS A 489 NZ REMARK 470 TYR A 493 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 498 OD1 OD2 REMARK 470 LEU A 502 CD1 CD2 REMARK 470 LEU A 508 CD1 CD2 REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 ASP A 510 CG OD1 OD2 REMARK 470 TYR A 511 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 512 CG OD1 ND2 REMARK 470 GLN A 515 CG CD OE1 NE2 REMARK 470 GLN A 516 CG CD OE1 NE2 REMARK 470 MET A 518 CG SD CE REMARK 470 GLN A 521 CG CD OE1 NE2 REMARK 470 GLN A 544 CG CD OE1 NE2 REMARK 470 GLU A 545 CD OE1 OE2 REMARK 470 GLN A 546 CG CD OE1 NE2 REMARK 470 ASN A 556 CG OD1 ND2 REMARK 470 GLN A 557 OE1 NE2 REMARK 470 MET A 566 CG SD CE REMARK 470 ARG A 567 CG CD NE CZ NH1 NH2 REMARK 470 SER A 568 OG REMARK 470 LEU A 587 N CA CB CG CD1 CD2 REMARK 470 GLU A 625 CG CD OE1 OE2 REMARK 470 GLN A 626 CG CD OE1 NE2 REMARK 470 HIS A 628 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 634 CG CD1 CD2 REMARK 470 ARG A 638 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 639 CG CD OE1 OE2 REMARK 470 ARG A 647 CG CD NE CZ NH1 NH2 REMARK 470 SER A 652 OG REMARK 470 MET A 665 SD CE REMARK 470 LYS A 668 CE NZ REMARK 470 GLN A 699 CG CD OE1 NE2 REMARK 470 ARG A 706 CD NE CZ NH1 NH2 REMARK 470 GLU A 715 CG CD OE1 OE2 REMARK 470 ASP A 716 CG OD1 OD2 REMARK 470 ARG A 720 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 735 NE CZ NH1 NH2 REMARK 470 ARG A 747 NE CZ NH1 NH2 REMARK 470 SER A 748 OG REMARK 470 GLU B 478 CG CD OE1 OE2 REMARK 470 GLU B 481 CG CD OE1 OE2 REMARK 470 PHE B 484 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 486 CG CD CE NZ REMARK 470 LYS B 489 CE NZ REMARK 470 TYR B 493 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 494 C O CD1 CD2 REMARK 470 HIS B 499 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 508 CG CD1 CD2 REMARK 470 LYS B 509 CG CD CE NZ REMARK 470 TYR B 511 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 512 CG OD1 ND2 REMARK 470 GLN B 515 CD OE1 NE2 REMARK 470 GLN B 516 CG CD OE1 NE2 REMARK 470 GLN B 521 CG CD OE1 NE2 REMARK 470 SER B 525 OG REMARK 470 THR B 543 OG1 CG2 REMARK 470 GLN B 544 CG CD OE1 NE2 REMARK 470 GLN B 546 CG CD OE1 NE2 REMARK 470 GLU B 562 CG CD OE1 OE2 REMARK 470 MET B 566 CG SD CE REMARK 470 ARG B 567 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 587 N CA CB CG CD1 CD2 REMARK 470 GLU B 625 CG CD OE1 OE2 REMARK 470 GLN B 626 CG CD OE1 NE2 REMARK 470 LEU B 634 CG CD1 CD2 REMARK 470 GLU B 639 N CA CB CG CD OE1 OE2 REMARK 470 ILE B 640 CG1 CG2 CD1 REMARK 470 ARG B 647 CD NE CZ NH1 NH2 REMARK 470 VAL B 648 CG1 CG2 REMARK 470 GLN B 649 CG CD OE1 NE2 REMARK 470 SER B 650 OG REMARK 470 LYS B 651 CG CD CE NZ REMARK 470 LEU B 653 CG CD1 CD2 REMARK 470 LYS B 668 CD CE NZ REMARK 470 ARG B 708 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 715 CD OE1 OE2 REMARK 470 ASP B 716 CG OD1 OD2 REMARK 470 ARG B 720 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 735 CD NE CZ NH1 NH2 REMARK 470 LYS B 740 CE NZ REMARK 470 ARG B 747 CD NE CZ NH1 NH2 REMARK 470 SER B 748 OG REMARK 470 GLU B 750 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 476 -142.52 -116.82 REMARK 500 LYS A 614 -11.35 81.60 REMARK 500 ASP A 615 45.87 -141.46 REMARK 500 MET B 476 -142.67 -109.41 REMARK 500 CYS B 482 -158.62 -92.07 REMARK 500 LYS B 614 -9.99 82.91 REMARK 500 ASP B 615 43.89 -141.47 REMARK 500 TYR B 641 53.60 -116.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0LI A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0LI B 801 DBREF 6TU9 A 453 752 UNP Q01973 ROR1_HUMAN 453 752 DBREF 6TU9 B 453 752 UNP Q01973 ROR1_HUMAN 453 752 SEQADV 6TU9 MET A 518 UNP Q01973 THR 518 CONFLICT SEQADV 6TU9 HIS A 753 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS A 754 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS A 755 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS A 756 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS A 757 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS A 758 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 MET B 518 UNP Q01973 THR 518 CONFLICT SEQADV 6TU9 HIS B 753 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS B 754 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS B 755 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS B 756 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS B 757 UNP Q01973 EXPRESSION TAG SEQADV 6TU9 HIS B 758 UNP Q01973 EXPRESSION TAG SEQRES 1 A 306 MET SER MET LEU ASN ALA TYR LYS PRO LYS SER LYS ALA SEQRES 2 A 306 LYS GLU LEU PRO LEU SER ALA VAL ARG PHE MET GLU GLU SEQRES 3 A 306 LEU GLY GLU CYS ALA PHE GLY LYS ILE TYR LYS GLY HIS SEQRES 4 A 306 LEU TYR LEU PRO GLY MET ASP HIS ALA GLN LEU VAL ALA SEQRES 5 A 306 ILE LYS THR LEU LYS ASP TYR ASN ASN PRO GLN GLN TRP SEQRES 6 A 306 MET GLU PHE GLN GLN GLU ALA SER LEU MET ALA GLU LEU SEQRES 7 A 306 HIS HIS PRO ASN ILE VAL CYS LEU LEU GLY ALA VAL THR SEQRES 8 A 306 GLN GLU GLN PRO VAL CYS MET LEU PHE GLU TYR ILE ASN SEQRES 9 A 306 GLN GLY ASP LEU HIS GLU PHE LEU ILE MET ARG SER PRO SEQRES 10 A 306 HIS SER ASP VAL GLY CYS SER SER ASP GLU ASP GLY THR SEQRES 11 A 306 VAL LYS SER SER LEU ASP HIS GLY ASP PHE LEU HIS ILE SEQRES 12 A 306 ALA ILE GLN ILE ALA ALA GLY MET GLU TYR LEU SER SER SEQRES 13 A 306 HIS PHE PHE VAL HIS LYS ASP LEU ALA ALA ARG ASN ILE SEQRES 14 A 306 LEU ILE GLY GLU GLN LEU HIS VAL LYS ILE SER ASP LEU SEQRES 15 A 306 GLY LEU SER ARG GLU ILE TYR SER ALA ASP TYR TYR ARG SEQRES 16 A 306 VAL GLN SER LYS SER LEU LEU PRO ILE ARG TRP MET PRO SEQRES 17 A 306 PRO GLU ALA ILE MET TYR GLY LYS PHE SER SER ASP SER SEQRES 18 A 306 ASP ILE TRP SER PHE GLY VAL VAL LEU TRP GLU ILE PHE SEQRES 19 A 306 SER PHE GLY LEU GLN PRO TYR TYR GLY PHE SER ASN GLN SEQRES 20 A 306 GLU VAL ILE GLU MET VAL ARG LYS ARG GLN LEU LEU PRO SEQRES 21 A 306 CYS SER GLU ASP CYS PRO PRO ARG MET TYR SER LEU MET SEQRES 22 A 306 THR GLU CYS TRP ASN GLU ILE PRO SER ARG ARG PRO ARG SEQRES 23 A 306 PHE LYS ASP ILE HIS VAL ARG LEU ARG SER TRP GLU GLY SEQRES 24 A 306 LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 306 MET SER MET LEU ASN ALA TYR LYS PRO LYS SER LYS ALA SEQRES 2 B 306 LYS GLU LEU PRO LEU SER ALA VAL ARG PHE MET GLU GLU SEQRES 3 B 306 LEU GLY GLU CYS ALA PHE GLY LYS ILE TYR LYS GLY HIS SEQRES 4 B 306 LEU TYR LEU PRO GLY MET ASP HIS ALA GLN LEU VAL ALA SEQRES 5 B 306 ILE LYS THR LEU LYS ASP TYR ASN ASN PRO GLN GLN TRP SEQRES 6 B 306 MET GLU PHE GLN GLN GLU ALA SER LEU MET ALA GLU LEU SEQRES 7 B 306 HIS HIS PRO ASN ILE VAL CYS LEU LEU GLY ALA VAL THR SEQRES 8 B 306 GLN GLU GLN PRO VAL CYS MET LEU PHE GLU TYR ILE ASN SEQRES 9 B 306 GLN GLY ASP LEU HIS GLU PHE LEU ILE MET ARG SER PRO SEQRES 10 B 306 HIS SER ASP VAL GLY CYS SER SER ASP GLU ASP GLY THR SEQRES 11 B 306 VAL LYS SER SER LEU ASP HIS GLY ASP PHE LEU HIS ILE SEQRES 12 B 306 ALA ILE GLN ILE ALA ALA GLY MET GLU TYR LEU SER SER SEQRES 13 B 306 HIS PHE PHE VAL HIS LYS ASP LEU ALA ALA ARG ASN ILE SEQRES 14 B 306 LEU ILE GLY GLU GLN LEU HIS VAL LYS ILE SER ASP LEU SEQRES 15 B 306 GLY LEU SER ARG GLU ILE TYR SER ALA ASP TYR TYR ARG SEQRES 16 B 306 VAL GLN SER LYS SER LEU LEU PRO ILE ARG TRP MET PRO SEQRES 17 B 306 PRO GLU ALA ILE MET TYR GLY LYS PHE SER SER ASP SER SEQRES 18 B 306 ASP ILE TRP SER PHE GLY VAL VAL LEU TRP GLU ILE PHE SEQRES 19 B 306 SER PHE GLY LEU GLN PRO TYR TYR GLY PHE SER ASN GLN SEQRES 20 B 306 GLU VAL ILE GLU MET VAL ARG LYS ARG GLN LEU LEU PRO SEQRES 21 B 306 CYS SER GLU ASP CYS PRO PRO ARG MET TYR SER LEU MET SEQRES 22 B 306 THR GLU CYS TRP ASN GLU ILE PRO SER ARG ARG PRO ARG SEQRES 23 B 306 PHE LYS ASP ILE HIS VAL ARG LEU ARG SER TRP GLU GLY SEQRES 24 B 306 LEU HIS HIS HIS HIS HIS HIS HET 0LI A 801 39 HET 0LI B 801 39 HETNAM 0LI 3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4- HETNAM 2 0LI [(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL) HETNAM 3 0LI PHENYL}BENZAM IDE HETSYN 0LI PONATINIB FORMUL 3 0LI 2(C29 H27 F3 N6 O) FORMUL 5 HOH *94(H2 O) HELIX 1 AA1 PRO A 469 SER A 471 5 3 HELIX 2 AA2 ASN A 513 ALA A 528 1 16 HELIX 3 AA3 ASP A 559 ARG A 567 1 9 HELIX 4 AA4 ASP A 588 HIS A 609 1 22 HELIX 5 AA5 ALA A 617 ARG A 619 5 3 HELIX 6 AA6 GLU A 625 LEU A 627 5 3 HELIX 7 AA7 GLY A 635 TYR A 641 1 7 HELIX 8 AA8 SER A 642 TYR A 645 5 4 HELIX 9 AA9 PRO A 655 MET A 659 5 5 HELIX 10 AB1 PRO A 660 GLY A 667 1 8 HELIX 11 AB2 SER A 670 SER A 687 1 18 HELIX 12 AB3 SER A 697 LYS A 707 1 11 HELIX 13 AB4 PRO A 718 TRP A 729 1 12 HELIX 14 AB5 ILE A 732 ARG A 736 5 5 HELIX 15 AB6 ARG A 738 TRP A 749 1 12 HELIX 16 AB7 PRO B 469 SER B 471 5 3 HELIX 17 AB8 ASN B 513 ALA B 528 1 16 HELIX 18 AB9 ASP B 559 ARG B 567 1 9 HELIX 19 AC1 ASP B 588 HIS B 609 1 22 HELIX 20 AC2 ALA B 617 ARG B 619 5 3 HELIX 21 AC3 GLU B 625 LEU B 627 5 3 HELIX 22 AC4 TYR B 641 TYR B 645 5 5 HELIX 23 AC5 PRO B 655 MET B 659 5 5 HELIX 24 AC6 PRO B 660 GLY B 667 1 8 HELIX 25 AC7 SER B 670 SER B 687 1 18 HELIX 26 AC8 SER B 697 LYS B 707 1 11 HELIX 27 AC9 PRO B 718 TRP B 729 1 12 HELIX 28 AD1 ILE B 732 ARG B 736 5 5 HELIX 29 AD2 ARG B 738 GLU B 750 1 13 SHEET 1 AA1 5 VAL A 473 GLU A 481 0 SHEET 2 AA1 5 LYS A 486 LEU A 492 -1 O ILE A 487 N LEU A 479 SHEET 3 AA1 5 GLN A 501 THR A 507 -1 O ILE A 505 N TYR A 488 SHEET 4 AA1 5 CYS A 549 GLU A 553 -1 O PHE A 552 N ALA A 504 SHEET 5 AA1 5 LEU A 538 VAL A 542 -1 N LEU A 539 O LEU A 551 SHEET 1 AA2 2 ILE A 621 ILE A 623 0 SHEET 2 AA2 2 VAL A 629 ILE A 631 -1 O LYS A 630 N LEU A 622 SHEET 1 AA3 5 VAL B 473 GLU B 481 0 SHEET 2 AA3 5 GLY B 485 LEU B 492 -1 O ILE B 487 N LEU B 479 SHEET 3 AA3 5 GLN B 501 LEU B 508 -1 O ILE B 505 N TYR B 488 SHEET 4 AA3 5 CYS B 549 GLU B 553 -1 O PHE B 552 N ALA B 504 SHEET 5 AA3 5 LEU B 538 VAL B 542 -1 N VAL B 542 O CYS B 549 SHEET 1 AA4 2 ILE B 621 ILE B 623 0 SHEET 2 AA4 2 VAL B 629 ILE B 631 -1 O LYS B 630 N LEU B 622 SHEET 1 AA5 2 TYR B 646 ARG B 647 0 SHEET 2 AA5 2 LEU B 653 LEU B 654 -1 O LEU B 654 N TYR B 646 CISPEP 1 GLN A 546 PRO A 547 0 -5.46 CISPEP 2 GLN B 546 PRO B 547 0 0.30 SITE 1 AC1 14 ALA A 504 GLU A 523 MET A 527 VAL A 536 SITE 2 AC1 14 PHE A 552 GLU A 553 TYR A 554 ILE A 555 SITE 3 AC1 14 VAL A 612 HIS A 613 LEU A 622 ILE A 631 SITE 4 AC1 14 SER A 632 ASP A 633 SITE 1 AC2 17 ALA B 504 LYS B 506 GLU B 523 MET B 527 SITE 2 AC2 17 LEU B 530 VAL B 536 PHE B 552 GLU B 553 SITE 3 AC2 17 TYR B 554 ILE B 555 LEU B 606 VAL B 612 SITE 4 AC2 17 HIS B 613 LEU B 622 ILE B 631 SER B 632 SITE 5 AC2 17 ASP B 633 CRYST1 54.290 85.969 72.980 90.00 91.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018420 0.000000 0.000336 0.00000 SCALE2 0.000000 0.011632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013705 0.00000