HEADER TRANSPORT PROTEIN 11-JUN-19 6RYT TITLE ENGINEERED BETA-LACTOGLOBULIN: VARIANT M107L COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTOGLOBULIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-LG; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: LGB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ORIGAMI B; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-DUET-1 KEYWDS LIPOCALIN, MUTATION, LACTOGLOBULIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.I.LOCH,K.KURPIEWSKA,K.LEWINSKI REVDAT 4 24-JAN-24 6RYT 1 REMARK REVDAT 3 29-APR-20 6RYT 1 JRNL REVDAT 2 25-MAR-20 6RYT 1 JRNL REMARK REVDAT 1 26-JUN-19 6RYT 0 JRNL AUTH P.BONAREK,J.I.LOCH,M.TWORZYDLO,D.R.COOPER,K.MILTO,P.WROBEL, JRNL AUTH 2 K.KURPIEWSKA,K.LEWINSKI JRNL TITL STRUCTURE-BASED DESIGN APPROACH TO RATIONAL SITE-DIRECTED JRNL TITL 2 MUTAGENESIS OF BETA-LACTOGLOBULIN. JRNL REF J.STRUCT.BIOL. V. 210 07493 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 32169624 JRNL DOI 10.1016/J.JSB.2020.107493 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 13740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1027 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2242 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.340 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.853 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2286 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2258 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3084 ; 1.598 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5258 ; 1.177 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 8.015 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;34.128 ;25.165 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;15.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;12.326 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2405 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1151 ; 5.554 ; 2.350 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1150 ; 5.556 ; 2.348 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1423 ; 7.222 ; 3.469 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1424 ; 7.219 ; 3.471 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 7.541 ; 3.034 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1136 ; 7.540 ; 3.039 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1661 ;10.273 ; 4.233 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2251 ;11.695 ;28.189 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2252 ;11.694 ;28.218 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8790 2.1560 21.4490 REMARK 3 T TENSOR REMARK 3 T11: 0.2413 T22: 0.1546 REMARK 3 T33: 0.1640 T12: -0.0580 REMARK 3 T13: 0.0011 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 19.3332 L22: 4.6462 REMARK 3 L33: 0.6010 L12: -7.9327 REMARK 3 L13: 0.6448 L23: -0.2436 REMARK 3 S TENSOR REMARK 3 S11: -0.4042 S12: -0.8902 S13: 0.1714 REMARK 3 S21: 0.5234 S22: 0.2685 S23: -0.2122 REMARK 3 S31: -0.0995 S32: 0.1226 S33: 0.1358 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0150 11.0850 10.7640 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1012 REMARK 3 T33: 0.0650 T12: -0.0141 REMARK 3 T13: -0.0223 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 7.5419 L22: 1.2964 REMARK 3 L33: 1.7247 L12: 0.9528 REMARK 3 L13: -1.3761 L23: -0.3875 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: 0.3471 S13: -0.1566 REMARK 3 S21: -0.1471 S22: -0.1034 S23: -0.0697 REMARK 3 S31: 0.0748 S32: 0.0749 S33: 0.0431 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6900 7.8740 6.6140 REMARK 3 T TENSOR REMARK 3 T11: 0.1440 T22: 0.0961 REMARK 3 T33: 0.0470 T12: 0.0345 REMARK 3 T13: -0.0442 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 3.8760 L22: 3.5305 REMARK 3 L33: 3.3545 L12: 0.7069 REMARK 3 L13: -1.4339 L23: -0.1520 REMARK 3 S TENSOR REMARK 3 S11: 0.0621 S12: 0.1689 S13: 0.2100 REMARK 3 S21: -0.1922 S22: 0.0397 S23: 0.0677 REMARK 3 S31: -0.0404 S32: 0.1111 S33: -0.1017 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2010 10.6950 1.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.1261 REMARK 3 T33: 0.1326 T12: 0.0235 REMARK 3 T13: -0.0327 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 14.4692 L22: 6.4261 REMARK 3 L33: 16.7286 L12: 6.1433 REMARK 3 L13: -11.6011 L23: -8.3351 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: 0.5182 S13: 0.1331 REMARK 3 S21: -0.3696 S22: 0.1558 S23: 0.1929 REMARK 3 S31: 0.1910 S32: -0.0949 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9680 1.9800 14.4310 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.1176 REMARK 3 T33: 0.0927 T12: -0.0000 REMARK 3 T13: -0.0064 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 3.4232 L22: 5.2163 REMARK 3 L33: 4.0417 L12: 0.3649 REMARK 3 L13: -0.0253 L23: 0.9834 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: 0.0886 S13: -0.1127 REMARK 3 S21: -0.1217 S22: -0.0363 S23: 0.0684 REMARK 3 S31: 0.0900 S32: -0.1007 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4300 12.0300 15.9830 REMARK 3 T TENSOR REMARK 3 T11: 0.2205 T22: 0.1753 REMARK 3 T33: 0.1566 T12: 0.0130 REMARK 3 T13: -0.0472 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 4.1252 L22: 1.9547 REMARK 3 L33: 4.3490 L12: 1.4224 REMARK 3 L13: 0.9779 L23: 0.4199 REMARK 3 S TENSOR REMARK 3 S11: -0.1587 S12: -0.2262 S13: 0.4029 REMARK 3 S21: 0.4277 S22: 0.1104 S23: -0.0252 REMARK 3 S31: -0.1387 S32: -0.0469 S33: 0.0483 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6080 8.4070 20.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.2321 T22: 0.0939 REMARK 3 T33: 0.1007 T12: 0.0238 REMARK 3 T13: -0.0257 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 7.0615 L22: 4.4791 REMARK 3 L33: 3.1473 L12: -0.2044 REMARK 3 L13: -1.6969 L23: -1.3594 REMARK 3 S TENSOR REMARK 3 S11: -0.1882 S12: -0.7673 S13: 0.1449 REMARK 3 S21: 0.6460 S22: 0.1617 S23: -0.1182 REMARK 3 S31: 0.0641 S32: 0.1540 S33: 0.0266 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1810 21.1370 9.5080 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1682 REMARK 3 T33: 0.1412 T12: -0.0301 REMARK 3 T13: 0.0443 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 18.6648 L22: 13.2812 REMARK 3 L33: 3.9542 L12: -7.3221 REMARK 3 L13: 2.4402 L23: 1.6926 REMARK 3 S TENSOR REMARK 3 S11: -0.2760 S12: 0.1595 S13: 0.5052 REMARK 3 S21: -0.1546 S22: 0.0736 S23: 0.1030 REMARK 3 S31: -0.5831 S32: -0.2909 S33: 0.2023 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5490 20.6880 11.4540 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.0942 REMARK 3 T33: 0.0485 T12: 0.0060 REMARK 3 T13: -0.0047 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.7203 L22: 2.6184 REMARK 3 L33: 1.3410 L12: 0.6019 REMARK 3 L13: -0.3229 L23: -0.1556 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.0404 S13: -0.0023 REMARK 3 S21: -0.0061 S22: -0.0007 S23: 0.0661 REMARK 3 S31: -0.0142 S32: -0.0729 S33: -0.0182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6RYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976225 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 78.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BSY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.60 M (NH4)2SO4 IN 0.1 TRIS-HCL PH REMARK 280 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.12000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 B 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 LYS A 8 REMARK 465 GLU A 62 REMARK 465 ASN A 63 REMARK 465 GLY A 64 REMARK 465 GLU A 65 REMARK 465 LEU A 87 REMARK 465 ASN A 88 REMARK 465 ALA A 111 REMARK 465 GLU A 112 REMARK 465 PRO A 113 REMARK 465 GLU A 114 REMARK 465 GLN A 115 REMARK 465 GLN A 159 REMARK 465 HIS A 161 REMARK 465 ILE A 162 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 THR B 4 REMARK 465 GLU B 62 REMARK 465 ASN B 63 REMARK 465 GLY B 64 REMARK 465 GLU B 65 REMARK 465 ALA B 111 REMARK 465 GLU B 112 REMARK 465 PRO B 113 REMARK 465 GLU B 114 REMARK 465 GLU B 158 REMARK 465 GLN B 159 REMARK 465 CYS B 160 REMARK 465 HIS B 161 REMARK 465 ILE B 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 TRP A 61 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 61 CZ3 CH2 REMARK 470 ASP A 85 CG OD1 OD2 REMARK 470 VAL A 128 CG1 CG2 REMARK 470 ASP A 137 CG OD1 OD2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLN B 35 CG CD OE1 NE2 REMARK 470 LYS B 60 CE NZ REMARK 470 TRP B 61 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 61 CZ3 CH2 REMARK 470 LYS B 70 CD CE NZ REMARK 470 GLN B 115 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 90 -0.46 -148.83 REMARK 500 ASP A 96 141.99 -176.87 REMARK 500 TYR A 99 -39.66 76.87 REMARK 500 LYS A 101 -51.83 -129.51 REMARK 500 PRO A 126 43.76 -75.13 REMARK 500 ASN B 88 -63.34 -106.70 REMARK 500 ASP B 96 143.16 -179.35 REMARK 500 TYR B 99 -43.34 77.84 REMARK 500 LYS B 101 -51.02 -130.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 DBREF 6RYT A 1 162 UNP P02754 LACB_BOVIN 17 178 DBREF 6RYT B 1 162 UNP P02754 LACB_BOVIN 17 178 SEQADV 6RYT ALA A 1 UNP P02754 LEU 17 ENGINEERED MUTATION SEQADV 6RYT SER A 2 UNP P02754 ILE 18 ENGINEERED MUTATION SEQADV 6RYT LEU A 107 UNP P02754 MET 123 ENGINEERED MUTATION SEQADV 6RYT ALA B 1 UNP P02754 LEU 17 ENGINEERED MUTATION SEQADV 6RYT SER B 2 UNP P02754 ILE 18 ENGINEERED MUTATION SEQADV 6RYT LEU B 107 UNP P02754 MET 123 ENGINEERED MUTATION SEQRES 1 A 162 ALA SER VAL THR GLN THR MET LYS GLY LEU ASP ILE GLN SEQRES 2 A 162 LYS VAL ALA GLY THR TRP TYR SER LEU ALA MET ALA ALA SEQRES 3 A 162 SER ASP ILE SER LEU LEU ASP ALA GLN SER ALA PRO LEU SEQRES 4 A 162 ARG VAL TYR VAL GLU GLU LEU LYS PRO THR PRO GLU GLY SEQRES 5 A 162 ASP LEU GLU ILE LEU LEU GLN LYS TRP GLU ASN GLY GLU SEQRES 6 A 162 CYS ALA GLN LYS LYS ILE ILE ALA GLU LYS THR LYS ILE SEQRES 7 A 162 PRO ALA VAL PHE LYS ILE ASP ALA LEU ASN GLU ASN LYS SEQRES 8 A 162 VAL LEU VAL LEU ASP THR ASP TYR LYS LYS TYR LEU LEU SEQRES 9 A 162 PHE CYS LEU GLU ASN SER ALA GLU PRO GLU GLN SER LEU SEQRES 10 A 162 ALA CYS GLN CYS LEU VAL ARG THR PRO GLU VAL ASP ASP SEQRES 11 A 162 GLU ALA LEU GLU LYS PHE ASP LYS ALA LEU LYS ALA LEU SEQRES 12 A 162 PRO MET HIS ILE ARG LEU SER PHE ASN PRO THR GLN LEU SEQRES 13 A 162 GLU GLU GLN CYS HIS ILE SEQRES 1 B 162 ALA SER VAL THR GLN THR MET LYS GLY LEU ASP ILE GLN SEQRES 2 B 162 LYS VAL ALA GLY THR TRP TYR SER LEU ALA MET ALA ALA SEQRES 3 B 162 SER ASP ILE SER LEU LEU ASP ALA GLN SER ALA PRO LEU SEQRES 4 B 162 ARG VAL TYR VAL GLU GLU LEU LYS PRO THR PRO GLU GLY SEQRES 5 B 162 ASP LEU GLU ILE LEU LEU GLN LYS TRP GLU ASN GLY GLU SEQRES 6 B 162 CYS ALA GLN LYS LYS ILE ILE ALA GLU LYS THR LYS ILE SEQRES 7 B 162 PRO ALA VAL PHE LYS ILE ASP ALA LEU ASN GLU ASN LYS SEQRES 8 B 162 VAL LEU VAL LEU ASP THR ASP TYR LYS LYS TYR LEU LEU SEQRES 9 B 162 PHE CYS LEU GLU ASN SER ALA GLU PRO GLU GLN SER LEU SEQRES 10 B 162 ALA CYS GLN CYS LEU VAL ARG THR PRO GLU VAL ASP ASP SEQRES 11 B 162 GLU ALA LEU GLU LYS PHE ASP LYS ALA LEU LYS ALA LEU SEQRES 12 B 162 PRO MET HIS ILE ARG LEU SER PHE ASN PRO THR GLN LEU SEQRES 13 B 162 GLU GLU GLN CYS HIS ILE HET GOL A 201 6 HET PO4 B 201 5 HET GOL B 202 6 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 PO4 O4 P 3- FORMUL 6 HOH *40(H2 O) HELIX 1 AA1 ASP A 11 ALA A 16 5 6 HELIX 2 AA2 ASP A 28 ASP A 33 1 6 HELIX 3 AA3 ASP A 129 LYS A 141 1 13 HELIX 4 AA4 ASN A 152 GLU A 158 1 7 HELIX 5 AA5 ASP B 11 ALA B 16 5 6 HELIX 6 AA6 ASP B 28 LEU B 32 5 5 HELIX 7 AA7 ASP B 129 ALA B 142 1 14 HELIX 8 AA8 ASN B 152 GLU B 157 1 6 SHEET 1 AA120 GLY A 17 THR A 18 0 SHEET 2 AA120 TYR A 42 PRO A 48 -1 O LEU A 46 N GLY A 17 SHEET 3 AA120 LEU A 54 LYS A 60 -1 O GLU A 55 N LYS A 47 SHEET 4 AA120 ALA A 67 LYS A 75 -1 O ALA A 73 N LEU A 54 SHEET 5 AA120 VAL A 81 ILE A 84 -1 O LYS A 83 N GLU A 74 SHEET 6 AA120 LYS A 91 THR A 97 -1 O VAL A 92 N PHE A 82 SHEET 7 AA120 TYR A 102 GLU A 108 -1 O LEU A 104 N ASP A 96 SHEET 8 AA120 ALA A 118 VAL A 123 -1 O ALA A 118 N LEU A 107 SHEET 9 AA120 TYR A 20 ALA A 26 -1 N ALA A 23 O CYS A 121 SHEET 10 AA120 ILE A 147 SER A 150 -1 O LEU A 149 N MET A 24 SHEET 11 AA120 ILE B 147 SER B 150 -1 O ARG B 148 N ARG A 148 SHEET 12 AA120 TYR B 20 ALA B 26 -1 N MET B 24 O LEU B 149 SHEET 13 AA120 LEU B 117 VAL B 123 -1 O CYS B 121 N LEU B 22 SHEET 14 AA120 TYR B 102 ASN B 109 -1 N LEU B 107 O ALA B 118 SHEET 15 AA120 GLU B 89 THR B 97 -1 N ASP B 96 O LEU B 104 SHEET 16 AA120 VAL B 81 ILE B 84 -1 N ILE B 84 O ASN B 90 SHEET 17 AA120 ALA B 67 LYS B 75 -1 N GLU B 74 O LYS B 83 SHEET 18 AA120 LEU B 54 LYS B 60 -1 N LEU B 58 O LYS B 69 SHEET 19 AA120 TYR B 42 PRO B 48 -1 N LYS B 47 O GLU B 55 SHEET 20 AA120 GLY B 17 THR B 18 -1 N GLY B 17 O LEU B 46 SSBOND 1 CYS A 66 CYS A 160 1555 1555 2.06 SSBOND 2 CYS A 106 CYS A 119 1555 1555 2.08 SSBOND 3 CYS B 106 CYS B 119 1555 1555 2.11 SITE 1 AC1 3 HIS A 146 GLY B 9 PRO B 79 SITE 1 AC2 5 ALA B 86 LEU B 87 ASN B 88 GLU B 89 SITE 2 AC2 5 HOH B 318 SITE 1 AC3 3 GLU B 108 LEU B 143 HOH B 320 CRYST1 56.160 61.520 78.240 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017806 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012781 0.00000