HEADER TRANSCRIPTION/DNA 26-SEP-18 6ML4 TITLE BTB24 ZINC FINGERS 4-8 WITH 19+1MER DNA OLIGONUCLEOTIDE (SEQUENCE 3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGERS 4-8 (UNP RESIDUES 375-519); COMPND 5 SYNONYM: BONE MORPHOGENETIC PROTEIN-INDUCED FACTOR 1, BRAIN-SPECIFIC COMPND 6 PROTEIN 1, ZINC FINGER PROTEIN 450; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*AP*CP*GP*CP*AP*GP*GP*TP*CP*CP*TP*GP*GP*AP*CP*GP*AP*AP*GP*C)-3'); COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*TP*GP*CP*TP*TP*CP*GP*TP*CP*CP*AP*GP*GP*AP*CP*CP*TP*GP*CP*G)-3'); COMPND 16 CHAIN: F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZBTB24, BIF1, BSG1, ZNF450; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: MOUSE; SOURCE 17 ORGANISM_TAXID: 10090 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG,R.REN REVDAT 4 11-OCT-23 6ML4 1 REMARK REVDAT 3 01-JAN-20 6ML4 1 REMARK REVDAT 2 30-OCT-19 6ML4 1 JRNL REVDAT 1 03-JUL-19 6ML4 0 JRNL AUTH R.REN,S.HARDIKAR,J.R.HORTON,Y.LU,Y.ZENG,A.K.SINGH,K.LIN, JRNL AUTH 2 L.D.COLETTA,J.SHEN,C.S.LIN KONG,H.HASHIMOTO,X.ZHANG,T.CHEN, JRNL AUTH 3 X.CHENG JRNL TITL STRUCTURAL BASIS OF SPECIFIC DNA BINDING BY THE JRNL TITL 2 TRANSCRIPTION FACTOR ZBTB24. JRNL REF NUCLEIC ACIDS RES. V. 47 8388 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31226215 JRNL DOI 10.1093/NAR/GKZ557 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.2 REMARK 3 NUMBER OF REFLECTIONS : 40368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0445 - 3.5704 1.00 3496 177 0.1433 0.1789 REMARK 3 2 3.5704 - 2.8348 0.99 3439 165 0.1763 0.1991 REMARK 3 3 2.8348 - 2.4767 1.00 3430 173 0.1918 0.1906 REMARK 3 4 2.4767 - 2.2504 1.00 3413 180 0.1953 0.2090 REMARK 3 5 2.2504 - 2.0891 1.00 3409 175 0.2046 0.1942 REMARK 3 6 2.0891 - 1.9660 1.00 3424 183 0.2077 0.2363 REMARK 3 7 1.9660 - 1.8676 1.00 3375 171 0.2182 0.2544 REMARK 3 8 1.8676 - 1.7863 1.00 3420 181 0.2264 0.2564 REMARK 3 9 1.7863 - 1.7175 1.00 3404 167 0.2430 0.2689 REMARK 3 10 1.7175 - 1.6583 0.90 3031 172 0.2465 0.2390 REMARK 3 11 1.6583 - 1.6064 0.61 2078 107 0.2583 0.2728 REMARK 3 12 1.6064 - 1.5605 0.41 1382 80 0.2721 0.2881 REMARK 3 13 1.5605 - 1.5194 0.24 819 35 0.3160 0.4428 REMARK 3 14 1.5194 - 1.4824 0.08 267 15 0.3781 0.3499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2106 REMARK 3 ANGLE : 0.532 2996 REMARK 3 CHIRALITY : 0.045 321 REMARK 3 PLANARITY : 0.003 243 REMARK 3 DIHEDRAL : 24.423 845 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1974 35.8123 28.8499 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.2309 REMARK 3 T33: 0.2186 T12: 0.0668 REMARK 3 T13: 0.0578 T23: -0.0706 REMARK 3 L TENSOR REMARK 3 L11: 9.9331 L22: 4.2879 REMARK 3 L33: 7.8107 L12: -1.0109 REMARK 3 L13: 5.5224 L23: -3.3839 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: 0.1327 S13: 0.1656 REMARK 3 S21: -0.1725 S22: -0.3022 S23: -0.1516 REMARK 3 S31: 0.4215 S32: -0.0587 S33: 0.2318 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 389 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6916 33.1745 22.3183 REMARK 3 T TENSOR REMARK 3 T11: 0.3240 T22: 0.2064 REMARK 3 T33: 0.2100 T12: 0.0909 REMARK 3 T13: 0.0985 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 8.2635 L22: 9.0984 REMARK 3 L33: 5.8793 L12: -1.8280 REMARK 3 L13: 0.4771 L23: 2.5790 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.3039 S13: -0.0119 REMARK 3 S21: -0.4801 S22: -0.0887 S23: -0.6017 REMARK 3 S31: 0.5988 S32: 0.4890 S33: 0.0714 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5509 24.8905 7.9771 REMARK 3 T TENSOR REMARK 3 T11: 0.1373 T22: 0.1668 REMARK 3 T33: 0.1949 T12: -0.0311 REMARK 3 T13: 0.0227 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 4.7326 L22: 7.3227 REMARK 3 L33: 4.8396 L12: -2.2687 REMARK 3 L13: -2.8717 L23: 2.1512 REMARK 3 S TENSOR REMARK 3 S11: 0.1116 S12: 0.1476 S13: 0.4894 REMARK 3 S21: -0.4135 S22: 0.1254 S23: -0.2129 REMARK 3 S31: -0.6597 S32: 0.0188 S33: -0.2029 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 417 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7287 15.0530 7.3696 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.2077 REMARK 3 T33: 0.1089 T12: -0.0232 REMARK 3 T13: 0.0497 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.5387 L22: 4.7842 REMARK 3 L33: 3.0300 L12: -1.0180 REMARK 3 L13: -0.8745 L23: 3.8024 REMARK 3 S TENSOR REMARK 3 S11: -0.1584 S12: 0.1478 S13: -0.2326 REMARK 3 S21: -0.0350 S22: 0.0991 S23: -0.1385 REMARK 3 S31: 0.3261 S32: -0.1272 S33: 0.0065 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 429 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5780 2.5380 7.1451 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.0749 REMARK 3 T33: 0.0636 T12: 0.0241 REMARK 3 T13: -0.0192 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 6.7950 L22: 4.9899 REMARK 3 L33: 2.1232 L12: 0.5959 REMARK 3 L13: -0.7386 L23: 0.8072 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: -0.0810 S13: -0.2459 REMARK 3 S21: 0.1835 S22: 0.0760 S23: -0.0391 REMARK 3 S31: 0.0572 S32: 0.0893 S33: -0.0851 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 457 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7744 16.5355 7.9213 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.1048 REMARK 3 T33: 0.0780 T12: -0.0020 REMARK 3 T13: 0.0101 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 2.8266 L22: 3.6040 REMARK 3 L33: 2.7604 L12: -0.0659 REMARK 3 L13: -0.5106 L23: -3.0458 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: -0.1753 S13: -0.0003 REMARK 3 S21: 0.1756 S22: 0.1078 S23: 0.1425 REMARK 3 S31: -0.1567 S32: -0.0741 S33: -0.0879 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 490 THROUGH 514 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9786 27.1905 -11.0536 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.1117 REMARK 3 T33: 0.1393 T12: -0.0534 REMARK 3 T13: -0.0135 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 5.8289 L22: 4.8558 REMARK 3 L33: 8.5005 L12: -1.0617 REMARK 3 L13: 1.6652 L23: -1.7370 REMARK 3 S TENSOR REMARK 3 S11: -0.1249 S12: 0.4045 S13: -0.0961 REMARK 3 S21: -0.5666 S22: 0.1211 S23: 0.1810 REMARK 3 S31: 0.2984 S32: 0.0707 S33: 0.0543 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3430 18.5954 -10.5388 REMARK 3 T TENSOR REMARK 3 T11: 0.2296 T22: 0.1648 REMARK 3 T33: 0.1549 T12: -0.0601 REMARK 3 T13: -0.0624 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.6492 L22: 0.6359 REMARK 3 L33: 7.6243 L12: -1.4798 REMARK 3 L13: 3.9679 L23: -1.2875 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: 0.3078 S13: 0.0627 REMARK 3 S21: -0.3843 S22: 0.1065 S23: 0.1933 REMARK 3 S31: -0.0961 S32: 0.2745 S33: -0.0323 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7541 10.6403 1.1344 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.0850 REMARK 3 T33: 0.0766 T12: 0.0030 REMARK 3 T13: 0.0050 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 6.8393 L22: 6.1435 REMARK 3 L33: 6.4441 L12: -5.0506 REMARK 3 L13: 6.3412 L23: -3.4873 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: -0.0377 S13: -0.4073 REMARK 3 S21: -0.1530 S22: 0.1873 S23: 0.3693 REMARK 3 S31: -0.2067 S32: -0.0716 S33: -0.2098 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3322 17.0245 19.7061 REMARK 3 T TENSOR REMARK 3 T11: 0.1360 T22: 0.1779 REMARK 3 T33: 0.1036 T12: -0.0123 REMARK 3 T13: -0.0086 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 3.5782 L22: 2.1310 REMARK 3 L33: 5.9846 L12: 0.0831 REMARK 3 L13: 1.7593 L23: -0.1275 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: -0.5748 S13: -0.0336 REMARK 3 S21: 0.2659 S22: 0.1750 S23: -0.1045 REMARK 3 S31: -0.0123 S32: -0.4178 S33: -0.1686 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2006 16.4610 22.8661 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.1922 REMARK 3 T33: 0.0976 T12: 0.0114 REMARK 3 T13: -0.0190 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 4.2328 L22: 2.4386 REMARK 3 L33: 5.3260 L12: 0.7870 REMARK 3 L13: 2.8679 L23: 1.0452 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.3713 S13: -0.0299 REMARK 3 S21: 0.3127 S22: 0.1202 S23: -0.1857 REMARK 3 S31: -0.1273 S32: 0.0028 S33: -0.1103 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3123 19.4198 2.8824 REMARK 3 T TENSOR REMARK 3 T11: 0.2323 T22: 0.1567 REMARK 3 T33: 0.1141 T12: -0.0097 REMARK 3 T13: 0.0012 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 4.8291 L22: 6.8894 REMARK 3 L33: 3.1186 L12: 0.8147 REMARK 3 L13: 3.8029 L23: 1.5830 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: 0.1322 S13: 0.1047 REMARK 3 S21: -0.4999 S22: 0.2481 S23: -0.1313 REMARK 3 S31: -1.1191 S32: -0.3460 S33: -0.2112 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4104 10.3677 -8.8258 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.2351 REMARK 3 T33: 0.2999 T12: -0.0512 REMARK 3 T13: -0.0516 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 5.5308 L22: 6.9047 REMARK 3 L33: 7.2960 L12: -0.9544 REMARK 3 L13: 3.6563 L23: -0.1476 REMARK 3 S TENSOR REMARK 3 S11: -0.4215 S12: 1.0737 S13: -1.8474 REMARK 3 S21: -0.5539 S22: 0.8384 S23: 0.1686 REMARK 3 S31: 0.2471 S32: 0.1431 S33: -0.4942 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ML4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000237123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40443 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 28.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.4 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 11.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6ML3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M HEPES, PH 7.5, 0.2 REMARK 280 M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.40350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 370 REMARK 465 PRO A 371 REMARK 465 LEU A 372 REMARK 465 HIS A 516 REMARK 465 THR A 517 REMARK 465 ALA A 518 REMARK 465 ASP A 519 REMARK 465 TYR A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 LYS A 515 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA E 5 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 379 SG REMARK 620 2 CYS A 382 SG 116.3 REMARK 620 3 HIS A 395 NE2 109.5 99.2 REMARK 620 4 HIS A 399 NE2 104.5 117.2 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 407 SG REMARK 620 2 CYS A 410 SG 116.6 REMARK 620 3 HIS A 423 NE2 111.7 97.4 REMARK 620 4 HIS A 427 NE2 113.7 113.4 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 435 SG REMARK 620 2 CYS A 438 SG 118.9 REMARK 620 3 HIS A 451 NE2 109.8 107.8 REMARK 620 4 HIS A 455 NE2 109.4 114.3 93.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 463 SG REMARK 620 2 CYS A 466 SG 118.4 REMARK 620 3 HIS A 479 NE2 107.8 99.9 REMARK 620 4 HIS A 483 NE2 102.7 117.3 110.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 491 SG REMARK 620 2 CYS A 494 SG 115.4 REMARK 620 3 HIS A 507 NE2 108.7 105.6 REMARK 620 4 HIS A 511 NE2 106.3 120.5 98.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 502 DBREF 6ML4 A 375 519 UNP Q80X44 ZBT24_MOUSE 375 519 DBREF 6ML4 E 1 20 PDB 6ML4 6ML4 1 20 DBREF 6ML4 F 1 20 PDB 6ML4 6ML4 1 20 SEQADV 6ML4 GLY A 370 UNP Q80X44 EXPRESSION TAG SEQADV 6ML4 PRO A 371 UNP Q80X44 EXPRESSION TAG SEQADV 6ML4 LEU A 372 UNP Q80X44 EXPRESSION TAG SEQADV 6ML4 GLY A 373 UNP Q80X44 EXPRESSION TAG SEQADV 6ML4 SER A 374 UNP Q80X44 EXPRESSION TAG SEQADV 6ML4 TYR A 520 UNP Q80X44 EXPRESSION TAG SEQRES 1 A 151 GLY PRO LEU GLY SER LYS SER PHE THR CYS ASP GLN CYS SEQRES 2 A 151 GLY LYS TYR PHE SER GLN LYS ARG GLN LEU LYS SER HIS SEQRES 3 A 151 TYR ARG VAL HIS THR GLY HIS SER LEU PRO GLU CYS SER SEQRES 4 A 151 HIS CYS HIS ARG LYS PHE MET ASP VAL SER GLN LEU LYS SEQRES 5 A 151 LYS HIS LEU ARG THR HIS THR GLY GLU LYS PRO PHE THR SEQRES 6 A 151 CYS GLU ILE CYS GLY LYS SER PHE THR ALA LYS SER SER SEQRES 7 A 151 LEU GLN THR HIS ILE ARG ILE HIS ARG GLY GLU LYS PRO SEQRES 8 A 151 TYR SER CYS SER ILE CYS GLY LYS CYS PHE SER ASP SER SEQRES 9 A 151 SER ALA LYS ARG ARG HIS CYS ILE LEU HIS THR GLY LYS SEQRES 10 A 151 LYS PRO PHE SER CYS PRO GLU CYS GLY LEU GLN PHE ALA SEQRES 11 A 151 ARG LEU ASP ASN LEU LYS ALA HIS LEU LYS ILE HIS SER SEQRES 12 A 151 LYS GLU LYS HIS THR ALA ASP TYR SEQRES 1 E 20 DA DC DG DC DA DG DG DT DC DC DT DG DG SEQRES 2 E 20 DA DC DG DA DA DG DC SEQRES 1 F 20 DT DG DC DT DT DC DG DT DC DC DA DG DG SEQRES 2 F 20 DA DC DC DT DG DC DG HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET ZN A 604 1 HET ZN A 605 1 HET EDO A 606 4 HET EDO E 501 4 HET EDO E 502 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ZN 5(ZN 2+) FORMUL 9 EDO 3(C2 H6 O2) FORMUL 12 HOH *353(H2 O) HELIX 1 AA1 GLN A 388 TYR A 396 1 9 HELIX 2 AA2 TYR A 396 GLY A 401 1 6 HELIX 3 AA3 ASP A 416 GLY A 429 1 14 HELIX 4 AA4 ALA A 444 ARG A 456 1 13 HELIX 5 AA5 ASP A 472 ILE A 481 1 10 HELIX 6 AA6 LEU A 482 GLY A 485 5 4 HELIX 7 AA7 ARG A 500 LYS A 515 1 16 SHEET 1 AA1 2 PHE A 377 THR A 378 0 SHEET 2 AA1 2 TYR A 385 PHE A 386 -1 O PHE A 386 N PHE A 377 SHEET 1 AA2 2 PHE A 433 THR A 434 0 SHEET 2 AA2 2 SER A 441 PHE A 442 -1 O PHE A 442 N PHE A 433 SHEET 1 AA3 2 TYR A 461 SER A 462 0 SHEET 2 AA3 2 CYS A 469 PHE A 470 -1 O PHE A 470 N TYR A 461 SHEET 1 AA4 2 PHE A 489 SER A 490 0 SHEET 2 AA4 2 GLN A 497 PHE A 498 -1 O PHE A 498 N PHE A 489 LINK SG CYS A 379 ZN ZN A 601 1555 1555 2.32 LINK SG CYS A 382 ZN ZN A 601 1555 1555 2.30 LINK NE2 HIS A 395 ZN ZN A 601 1555 1555 2.04 LINK NE2 HIS A 399 ZN ZN A 601 1555 1555 2.03 LINK SG CYS A 407 ZN ZN A 602 1555 1555 2.31 LINK SG CYS A 410 ZN ZN A 602 1555 1555 2.29 LINK NE2 HIS A 423 ZN ZN A 602 1555 1555 2.01 LINK NE2 HIS A 427 ZN ZN A 602 1555 1555 2.04 LINK SG CYS A 435 ZN ZN A 603 1555 1555 2.30 LINK SG CYS A 438 ZN ZN A 603 1555 1555 2.28 LINK NE2 HIS A 451 ZN ZN A 603 1555 1555 2.04 LINK NE2 HIS A 455 ZN ZN A 603 1555 1555 2.03 LINK SG CYS A 463 ZN ZN A 604 1555 1555 2.33 LINK SG CYS A 466 ZN ZN A 604 1555 1555 2.26 LINK NE2 HIS A 479 ZN ZN A 604 1555 1555 2.04 LINK NE2 HIS A 483 ZN ZN A 604 1555 1555 2.04 LINK SG CYS A 491 ZN ZN A 605 1555 1555 2.27 LINK SG CYS A 494 ZN ZN A 605 1555 1555 2.29 LINK NE2 HIS A 507 ZN ZN A 605 1555 1555 2.02 LINK NE2 HIS A 511 ZN ZN A 605 1555 1555 2.03 CISPEP 1 GLY A 373 SER A 374 0 0.38 SITE 1 AC1 4 CYS A 379 CYS A 382 HIS A 395 HIS A 399 SITE 1 AC2 4 CYS A 407 CYS A 410 HIS A 423 HIS A 427 SITE 1 AC3 4 CYS A 435 CYS A 438 HIS A 451 HIS A 455 SITE 1 AC4 4 CYS A 463 CYS A 466 HIS A 479 HIS A 483 SITE 1 AC5 4 CYS A 491 CYS A 494 HIS A 507 HIS A 511 SITE 1 AC6 2 PRO A 492 GLU A 493 SITE 1 AC7 6 LYS A 440 HIS A 451 DT E 8 DC E 9 SITE 2 AC7 6 HOH E 632 HOH E 668 SITE 1 AC8 4 DG E 7 DT E 8 HOH E 611 HOH E 643 CRYST1 46.277 68.807 48.434 90.00 92.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021609 0.000000 0.000907 0.00000 SCALE2 0.000000 0.014533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020665 0.00000