HEADER CELL ADHESION 21-JUN-18 6GW5 TITLE X-RAY STRUCTURE OF THE HELICOBACTER PYLORI SABA ADHESIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OUTER MEMBRANE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: JHP_0662; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS HELICOBACTER PYLORI, ADHESIN, OUTER MEMBRANE PROTEIN, LEWIS X, KEYWDS 2 LECTIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR F.COPPENS,H.REMAUT REVDAT 3 17-JAN-24 6GW5 1 REMARK REVDAT 2 31-OCT-18 6GW5 1 JRNL REVDAT 1 25-JUL-18 6GW5 0 JRNL AUTH F.COPPENS,G.CASTALDO,A.DEBRAEKELEER,S.SUBEDI,K.MOONENS,A.LO, JRNL AUTH 2 H.REMAUT JRNL TITL HOP-FAMILY HELICOBACTER OUTER MEMBRANE ADHESINS FORM A NOVEL JRNL TITL 2 CLASS OF TYPE 5-LIKE SECRETION PROTEINS WITH AN INTERRUPTED JRNL TITL 3 BETA-BARREL DOMAIN. JRNL REF MOL. MICROBIOL. V. 110 33 2018 JRNL REFN ESSN 1365-2958 JRNL PMID 29995350 JRNL DOI 10.1111/MMI.14075 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 32620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2412 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.07000 REMARK 3 B22 (A**2) : -1.16000 REMARK 3 B33 (A**2) : -2.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.473 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.290 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6182 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5839 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8408 ; 1.656 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13388 ; 1.371 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 774 ; 5.588 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;41.983 ;27.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1047 ;17.565 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;32.805 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 979 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7267 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1429 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3126 ; 4.174 ; 5.274 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3125 ; 4.174 ; 5.272 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3890 ; 6.267 ; 7.882 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3891 ; 6.266 ; 7.884 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3056 ; 4.546 ; 5.635 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3057 ; 4.545 ; 5.636 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4519 ; 7.002 ; 8.272 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 27111 ;10.379 ;49.272 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 27074 ;10.379 ;49.283 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 23 438 B 23 438 45050 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6GW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1200010640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4O5J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.2 M KF, 0.1 M CITRATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.66050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.50350 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.66050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.50350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 22 REMARK 465 ASP A 113 REMARK 465 THR A 114 REMARK 465 GLN A 115 REMARK 465 THR A 178 REMARK 465 THR A 179 REMARK 465 GLN A 180 REMARK 465 GLY A 181 REMARK 465 GLN A 182 REMARK 465 ASN A 183 REMARK 465 GLY A 271 REMARK 465 SER A 272 REMARK 465 GLN A 273 REMARK 465 THR A 274 REMARK 465 GLY A 325 REMARK 465 LYS A 326 REMARK 465 THR A 327 REMARK 465 PRO A 328 REMARK 465 THR A 329 REMARK 465 ASN A 330 REMARK 465 PRO A 331 REMARK 465 TYR A 332 REMARK 465 ARG A 333 REMARK 465 GLN A 334 REMARK 465 ASN A 439 REMARK 465 ASN A 440 REMARK 465 PRO A 441 REMARK 465 PHE A 442 REMARK 465 LYS A 443 REMARK 465 LYS A 444 REMARK 465 VAL A 445 REMARK 465 GLY A 446 REMARK 465 MET A 447 REMARK 465 ILE A 448 REMARK 465 SER A 449 REMARK 465 SER A 450 REMARK 465 GLN A 451 REMARK 465 ASN A 452 REMARK 465 ASN A 453 REMARK 465 ASN A 454 REMARK 465 GLY A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 LYS B 112 REMARK 465 ASP B 113 REMARK 465 THR B 114 REMARK 465 GLN B 115 REMARK 465 LYS B 116 REMARK 465 THR B 178 REMARK 465 THR B 179 REMARK 465 GLN B 180 REMARK 465 GLY B 181 REMARK 465 GLN B 182 REMARK 465 ASN B 183 REMARK 465 THR B 270 REMARK 465 GLY B 271 REMARK 465 SER B 272 REMARK 465 GLN B 273 REMARK 465 THR B 274 REMARK 465 ASN B 323 REMARK 465 ALA B 324 REMARK 465 GLY B 325 REMARK 465 LYS B 326 REMARK 465 THR B 327 REMARK 465 PRO B 328 REMARK 465 THR B 329 REMARK 465 ASN B 330 REMARK 465 PRO B 331 REMARK 465 TYR B 332 REMARK 465 ARG B 333 REMARK 465 GLN B 334 REMARK 465 PRO B 441 REMARK 465 PHE B 442 REMARK 465 LYS B 443 REMARK 465 LYS B 444 REMARK 465 VAL B 445 REMARK 465 GLY B 446 REMARK 465 MET B 447 REMARK 465 ILE B 448 REMARK 465 SER B 449 REMARK 465 SER B 450 REMARK 465 GLN B 451 REMARK 465 ASN B 452 REMARK 465 ASN B 453 REMARK 465 ASN B 454 REMARK 465 GLY B 455 REMARK 465 HIS B 456 REMARK 465 HIS B 457 REMARK 465 HIS B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 -91.50 -124.76 REMARK 500 TYR A 104 93.79 -168.71 REMARK 500 CYS A 176 52.16 -102.50 REMARK 500 VAL A 219 -60.09 -133.71 REMARK 500 ASN A 323 109.84 -52.14 REMARK 500 GLN A 410 -55.56 75.58 REMARK 500 ASN A 411 19.91 -146.19 REMARK 500 ALA A 415 51.39 -152.54 REMARK 500 ALA B 101 -91.34 -128.52 REMARK 500 TYR B 104 91.91 -170.62 REMARK 500 ILE B 136 -15.21 -48.15 REMARK 500 LYS B 206 53.68 -93.27 REMARK 500 VAL B 219 -57.50 -135.73 REMARK 500 GLN B 410 -56.51 71.95 REMARK 500 ASN B 411 19.94 -146.61 REMARK 500 ALA B 415 48.33 -149.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 23 GLY A 24 149.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 6GW5 A 22 455 UNP Q9ZLB8 Q9ZLB8_HELPJ 42 475 DBREF 6GW5 B 22 455 UNP Q9ZLB8 Q9ZLB8_HELPJ 42 475 SEQADV 6GW5 ASP A 230 UNP Q9ZLB8 GLY 250 CONFLICT SEQADV 6GW5 LEU A 238 UNP Q9ZLB8 PHE 258 CONFLICT SEQADV 6GW5 HIS A 456 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS A 457 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS A 458 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS A 459 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS A 460 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS A 461 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 ASP B 230 UNP Q9ZLB8 GLY 250 CONFLICT SEQADV 6GW5 LEU B 238 UNP Q9ZLB8 PHE 258 CONFLICT SEQADV 6GW5 HIS B 456 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS B 457 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS B 458 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS B 459 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS B 460 UNP Q9ZLB8 EXPRESSION TAG SEQADV 6GW5 HIS B 461 UNP Q9ZLB8 EXPRESSION TAG SEQRES 1 A 440 ASN THR GLY GLU LEU LYS ASN LEU ASN GLU LYS TYR GLU SEQRES 2 A 440 GLN LEU SER GLN TYR LEU ASN GLN VAL ALA SER LEU LYS SEQRES 3 A 440 GLN SER ILE GLN ASN ALA ASN ASN ILE GLU LEU VAL ASN SEQRES 4 A 440 SER SER LEU ASN TYR LEU LYS SER PHE THR ASN ASN ASN SEQRES 5 A 440 TYR ASN SER THR THR GLN SER PRO ILE PHE ASN ALA VAL SEQRES 6 A 440 GLN ALA VAL ILE THR SER VAL LEU GLY PHE TRP SER LEU SEQRES 7 A 440 TYR ALA GLY ASN TYR LEU THR PHE PHE VAL VAL ASN LYS SEQRES 8 A 440 ASP THR GLN LYS PRO ALA SER VAL GLN GLY ASN PRO PRO SEQRES 9 A 440 PHE SER THR ILE VAL GLN ASN CYS SER GLY ILE GLU ASN SEQRES 10 A 440 CYS ALA MET ASN GLN THR THR TYR ASP LYS MET LYS LYS SEQRES 11 A 440 LEU ALA GLU ASP LEU GLN ALA ALA GLN GLN ASN ALA THR SEQRES 12 A 440 THR LYS ALA ASN ASN LEU CYS ALA LEU SER GLY CYS ALA SEQRES 13 A 440 THR THR GLN GLY GLN ASN PRO SER SER THR VAL SER ASN SEQRES 14 A 440 ALA LEU ASN LEU ALA GLN GLN LEU MET ASP LEU ILE ALA SEQRES 15 A 440 ASN THR LYS THR ALA MET MET TRP LYS ASN ILE VAL ILE SEQRES 16 A 440 ALA GLY VAL SER ASN VAL SER GLY ALA ILE ASP SER THR SEQRES 17 A 440 ASP TYR PRO THR GLN TYR ALA VAL LEU ASN ASN ILE LYS SEQRES 18 A 440 ALA MET ILE PRO ILE LEU GLN GLN ALA VAL THR LEU SER SEQRES 19 A 440 GLN SER ASN HIS THR LEU SER ALA SER LEU GLN ALA GLN SEQRES 20 A 440 ALA THR GLY SER GLN THR ASN PRO LYS PHE ALA LYS ASP SEQRES 21 A 440 ILE TYR ALA PHE ALA GLN ASN GLN LYS GLN VAL ILE SER SEQRES 22 A 440 TYR ALA GLN ASP ILE PHE ASN LEU PHE SER SER ILE PRO SEQRES 23 A 440 LYS ASP GLN TYR ARG TYR LEU GLU LYS ALA TYR LEU LYS SEQRES 24 A 440 ILE PRO ASN ALA GLY LYS THR PRO THR ASN PRO TYR ARG SEQRES 25 A 440 GLN GLU VAL ASN LEU ASN GLN GLU ILE GLN THR ILE GLN SEQRES 26 A 440 ASN ASN VAL SER TYR TYR GLY ASN ARG VAL ASP ALA ALA SEQRES 27 A 440 LEU SER VAL ALA LYS ASP VAL TYR ASN LEU LYS SER ASN SEQRES 28 A 440 GLN THR GLU ILE VAL THR THR TYR ASN ASN ALA LYS ASN SEQRES 29 A 440 LEU SER GLN GLU ILE SER LYS LEU PRO TYR ASN GLN VAL SEQRES 30 A 440 ASN THR LYS ASP ILE ILE THR LEU PRO TYR ASP GLN ASN SEQRES 31 A 440 ALA PRO ALA ALA GLY GLN TYR ASN TYR GLN ILE ASN PRO SEQRES 32 A 440 GLU GLN GLN SER ASN LEU SER GLN ALA LEU ALA ALA MET SEQRES 33 A 440 SER ASN ASN PRO PHE LYS LYS VAL GLY MET ILE SER SER SEQRES 34 A 440 GLN ASN ASN ASN GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 440 ASN THR GLY GLU LEU LYS ASN LEU ASN GLU LYS TYR GLU SEQRES 2 B 440 GLN LEU SER GLN TYR LEU ASN GLN VAL ALA SER LEU LYS SEQRES 3 B 440 GLN SER ILE GLN ASN ALA ASN ASN ILE GLU LEU VAL ASN SEQRES 4 B 440 SER SER LEU ASN TYR LEU LYS SER PHE THR ASN ASN ASN SEQRES 5 B 440 TYR ASN SER THR THR GLN SER PRO ILE PHE ASN ALA VAL SEQRES 6 B 440 GLN ALA VAL ILE THR SER VAL LEU GLY PHE TRP SER LEU SEQRES 7 B 440 TYR ALA GLY ASN TYR LEU THR PHE PHE VAL VAL ASN LYS SEQRES 8 B 440 ASP THR GLN LYS PRO ALA SER VAL GLN GLY ASN PRO PRO SEQRES 9 B 440 PHE SER THR ILE VAL GLN ASN CYS SER GLY ILE GLU ASN SEQRES 10 B 440 CYS ALA MET ASN GLN THR THR TYR ASP LYS MET LYS LYS SEQRES 11 B 440 LEU ALA GLU ASP LEU GLN ALA ALA GLN GLN ASN ALA THR SEQRES 12 B 440 THR LYS ALA ASN ASN LEU CYS ALA LEU SER GLY CYS ALA SEQRES 13 B 440 THR THR GLN GLY GLN ASN PRO SER SER THR VAL SER ASN SEQRES 14 B 440 ALA LEU ASN LEU ALA GLN GLN LEU MET ASP LEU ILE ALA SEQRES 15 B 440 ASN THR LYS THR ALA MET MET TRP LYS ASN ILE VAL ILE SEQRES 16 B 440 ALA GLY VAL SER ASN VAL SER GLY ALA ILE ASP SER THR SEQRES 17 B 440 ASP TYR PRO THR GLN TYR ALA VAL LEU ASN ASN ILE LYS SEQRES 18 B 440 ALA MET ILE PRO ILE LEU GLN GLN ALA VAL THR LEU SER SEQRES 19 B 440 GLN SER ASN HIS THR LEU SER ALA SER LEU GLN ALA GLN SEQRES 20 B 440 ALA THR GLY SER GLN THR ASN PRO LYS PHE ALA LYS ASP SEQRES 21 B 440 ILE TYR ALA PHE ALA GLN ASN GLN LYS GLN VAL ILE SER SEQRES 22 B 440 TYR ALA GLN ASP ILE PHE ASN LEU PHE SER SER ILE PRO SEQRES 23 B 440 LYS ASP GLN TYR ARG TYR LEU GLU LYS ALA TYR LEU LYS SEQRES 24 B 440 ILE PRO ASN ALA GLY LYS THR PRO THR ASN PRO TYR ARG SEQRES 25 B 440 GLN GLU VAL ASN LEU ASN GLN GLU ILE GLN THR ILE GLN SEQRES 26 B 440 ASN ASN VAL SER TYR TYR GLY ASN ARG VAL ASP ALA ALA SEQRES 27 B 440 LEU SER VAL ALA LYS ASP VAL TYR ASN LEU LYS SER ASN SEQRES 28 B 440 GLN THR GLU ILE VAL THR THR TYR ASN ASN ALA LYS ASN SEQRES 29 B 440 LEU SER GLN GLU ILE SER LYS LEU PRO TYR ASN GLN VAL SEQRES 30 B 440 ASN THR LYS ASP ILE ILE THR LEU PRO TYR ASP GLN ASN SEQRES 31 B 440 ALA PRO ALA ALA GLY GLN TYR ASN TYR GLN ILE ASN PRO SEQRES 32 B 440 GLU GLN GLN SER ASN LEU SER GLN ALA LEU ALA ALA MET SEQRES 33 B 440 SER ASN ASN PRO PHE LYS LYS VAL GLY MET ILE SER SER SEQRES 34 B 440 GLN ASN ASN ASN GLY HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *156(H2 O) HELIX 1 AA1 THR A 23 ASN A 54 1 32 HELIX 2 AA2 ASN A 55 SER A 76 1 22 HELIX 3 AA3 SER A 80 ALA A 101 1 22 HELIX 4 AA4 PHE A 126 CYS A 133 1 8 HELIX 5 AA5 GLN A 143 GLN A 161 1 19 HELIX 6 AA6 THR A 187 THR A 205 1 19 HELIX 7 AA7 LYS A 212 ILE A 214 5 3 HELIX 8 AA8 TYR A 231 GLN A 234 5 4 HELIX 9 AA9 TYR A 235 SER A 262 1 28 HELIX 10 AB1 ALA A 263 LEU A 265 5 3 HELIX 11 AB2 PRO A 276 SER A 305 1 30 HELIX 12 AB3 PRO A 307 GLU A 315 1 9 HELIX 13 AB4 LYS A 316 LYS A 320 5 5 HELIX 14 AB5 ASN A 337 ASN A 368 1 32 HELIX 15 AB6 ASN A 368 LYS A 392 1 25 HELIX 16 AB7 ASN A 423 MET A 437 1 15 HELIX 17 AB8 THR B 23 ASN B 54 1 32 HELIX 18 AB9 ASN B 55 SER B 76 1 22 HELIX 19 AC1 SER B 80 ALA B 101 1 22 HELIX 20 AC2 PHE B 126 CYS B 133 1 8 HELIX 21 AC3 GLN B 143 GLN B 160 1 18 HELIX 22 AC4 THR B 187 THR B 205 1 19 HELIX 23 AC5 LYS B 212 ILE B 214 5 3 HELIX 24 AC6 TYR B 231 GLN B 234 5 4 HELIX 25 AC7 TYR B 235 SER B 262 1 28 HELIX 26 AC8 ALA B 263 LEU B 265 5 3 HELIX 27 AC9 PRO B 276 SER B 305 1 30 HELIX 28 AD1 PRO B 307 LYS B 316 1 10 HELIX 29 AD2 ALA B 317 LYS B 320 5 4 HELIX 30 AD3 ASN B 337 ASN B 368 1 32 HELIX 31 AD4 ASN B 368 LYS B 392 1 25 HELIX 32 AD5 ASN B 423 SER B 438 1 16 SHEET 1 AA1 2 PHE A 108 VAL A 110 0 SHEET 2 AA1 2 ALA A 140 ASN A 142 1 O MET A 141 N PHE A 108 SHEET 1 AA2 2 MET A 209 MET A 210 0 SHEET 2 AA2 2 THR A 229 ASP A 230 -1 O ASP A 230 N MET A 209 SHEET 1 AA3 2 ILE A 404 THR A 405 0 SHEET 2 AA3 2 GLN A 421 ILE A 422 -1 O GLN A 421 N THR A 405 SHEET 1 AA4 2 PHE B 108 VAL B 110 0 SHEET 2 AA4 2 ALA B 140 ASN B 142 1 O MET B 141 N PHE B 108 SHEET 1 AA5 2 GLN B 161 ASN B 162 0 SHEET 2 AA5 2 ALA B 167 ASN B 168 -1 O ALA B 167 N ASN B 162 SHEET 1 AA6 2 MET B 209 MET B 210 0 SHEET 2 AA6 2 THR B 229 ASP B 230 -1 O ASP B 230 N MET B 209 SHEET 1 AA7 2 ILE B 404 THR B 405 0 SHEET 2 AA7 2 GLN B 421 ILE B 422 -1 O GLN B 421 N THR B 405 SSBOND 1 CYS A 133 CYS A 139 1555 1555 2.05 SSBOND 2 CYS A 171 CYS A 176 1555 1555 2.05 SSBOND 3 CYS B 133 CYS B 139 1555 1555 2.04 SSBOND 4 CYS B 171 CYS B 176 1555 1555 2.06 CRYST1 69.146 87.321 169.007 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014462 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005917 0.00000