HEADER OXIDOREDUCTASE 05-MAR-18 6FW2 TITLE CRYSTAL STRUCTURE OF HUMAN MARC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL AMIDOXIME-REDUCING COMPONENT 1,ENDOLYSIN, COMPND 3 MITOCHONDRIAL AMIDOXIME-REDUCING COMPONENT 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MARC1,MOLYBDENUM COFACTOR SULFURASE C-TERMINAL DOMAIN- COMPND 6 CONTAINING PROTEIN 1,MOCO SULFURASE C-TERMINAL DOMAIN-CONTAINING COMPND 7 PROTEIN 1,LYSIS PROTEIN,LYSOZYME,MURAMIDASE,MARC1,MOLYBDENUM COFACTOR COMPND 8 SULFURASE C-TERMINAL DOMAIN-CONTAINING PROTEIN 1,MOCO SULFURASE C- COMPND 9 TERMINAL DOMAIN-CONTAINING PROTEIN 1; COMPND 10 EC: 1.-.-.-,3.2.1.17,1.-.-.-; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: HUMAN, BACTERIOPHAGE T4; SOURCE 4 ORGANISM_TAXID: 9606, 10665; SOURCE 5 GENE: MARC1, MOSC1, E, T4TP126; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TP1000; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE80 KEYWDS MARC, MOSC, MOLYBDENUM COFACTOR, MOCO, N-REDUCTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.KUBITZA,A.SCHEIDIG REVDAT 3 28-NOV-18 6FW2 1 JRNL REVDAT 2 14-NOV-18 6FW2 1 JRNL REVDAT 1 31-OCT-18 6FW2 0 JRNL AUTH C.KUBITZA,F.BITTNER,C.GINSEL,A.HAVEMEYER,B.CLEMENT, JRNL AUTH 2 A.J.SCHEIDIG JRNL TITL CRYSTAL STRUCTURE OF HUMAN MARC1 REVEALS ITS EXCEPTIONAL JRNL TITL 2 POSITION AMONG EUKARYOTIC MOLYBDENUM ENZYMES. JRNL REF PROC. NATL. ACAD. SCI. V. 115 11958 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30397129 JRNL DOI 10.1073/PNAS.1808576115 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 45386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1071 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 31.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 439 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6FW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1200009008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 43.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 23.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS PROPANE, NA2MOO4, PEG3350, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.56650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.36300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.40900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.36300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.56650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.40900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 48 REMARK 465 ARG A 49 REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 GLN A 337 REMARK 465 GLY A 338 REMARK 465 THR A 339 REMARK 465 VAL A 340 REMARK 465 ASP A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 MOO A 1206 O HOH A 1301 2.08 REMARK 500 O HOH A 1564 O HOH A 1647 2.15 REMARK 500 O HOH A 1532 O HOH A 1711 2.16 REMARK 500 O HOH A 1363 O HOH A 1625 2.17 REMARK 500 OD1 ASN A 102 O HOH A 1302 2.17 REMARK 500 O HOH A 1463 O HOH A 1607 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1434 O HOH A 1584 4545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 207 CG TYR A 207 CD1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1145 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A1161 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 190 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU A 214 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO A 290 C - N - CD ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1020 -167.41 -77.74 REMARK 500 TYR A1161 -129.16 -120.07 REMARK 500 ALA A 206 -96.61 -100.41 REMARK 500 THR A 210 -38.68 -144.37 REMARK 500 THR A 210 -38.68 -144.53 REMARK 500 TYR A 249 17.20 57.07 REMARK 500 ARG A 305 7.14 -65.96 REMARK 500 LEU A 307 -60.58 -92.09 REMARK 500 SER A 311 123.80 -174.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 128 12.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1738 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1739 DISTANCE = 6.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EFK A1202 MO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 273 SG REMARK 620 2 EFK A1202 OT2 92.3 REMARK 620 3 EFK A1202 OT1 98.7 127.1 REMARK 620 4 MTE A1201 S1' 155.0 69.4 105.9 REMARK 620 5 MTE A1201 S2' 91.8 121.7 109.6 84.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTE A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFK A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B3P A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MOO A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MOO A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MOO A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MOO A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1208 DBREF 6FW2 A 53 128 UNP Q5VT66 MARC1_HUMAN 53 128 DBREF 6FW2 A 1001 1161 UNP D9IEF7 D9IEF7_BPT4 1 161 DBREF 6FW2 A 131 336 UNP Q5VT66 MARC1_HUMAN 131 336 SEQADV 6FW2 MET A 48 UNP Q5VT66 INITIATING METHIONINE SEQADV 6FW2 ARG A 49 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 GLY A 50 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 SER A 51 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 MET A 52 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 ALA A 1160 UNP D9IEF7 ALA 160 LINKER SEQADV 6FW2 TYR A 1161 UNP D9IEF7 TYR 161 LINKER SEQADV 6FW2 ALA A 165 UNP Q5VT66 THR 165 VARIANT SEQADV 6FW2 GLN A 337 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 GLY A 338 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 THR A 339 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 VAL A 340 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 ASP A 341 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 HIS A 342 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 HIS A 343 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 HIS A 344 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 HIS A 345 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 HIS A 346 UNP Q5VT66 EXPRESSION TAG SEQADV 6FW2 HIS A 347 UNP Q5VT66 EXPRESSION TAG SEQRES 1 A 459 MET ARG GLY SER MET GLN GLN VAL GLY THR VAL ALA GLN SEQRES 2 A 459 LEU TRP ILE TYR PRO VAL LYS SER CYS LYS GLY VAL PRO SEQRES 3 A 459 VAL SER GLU ALA GLU CYS THR ALA MET GLY LEU ARG SER SEQRES 4 A 459 GLY ASN LEU ARG ASP ARG PHE TRP LEU VAL ILE ASN GLN SEQRES 5 A 459 GLU GLY ASN MET VAL THR ALA ARG GLN GLU PRO ARG LEU SEQRES 6 A 459 VAL LEU ILE SER LEU THR CYS ASP GLY ASP THR LEU THR SEQRES 7 A 459 LEU SER ALA MET ASN ILE PHE GLU MET LEU ARG ILE ASP SEQRES 8 A 459 GLU GLY LEU ARG LEU LYS ILE TYR LYS ASP THR GLU GLY SEQRES 9 A 459 TYR TYR THR ILE GLY ILE GLY HIS LEU LEU THR LYS SER SEQRES 10 A 459 PRO SER LEU ASN ALA ALA LYS SER GLU LEU ASP LYS ALA SEQRES 11 A 459 ILE GLY ARG ASN CYS ASN GLY VAL ILE THR LYS ASP GLU SEQRES 12 A 459 ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL SEQRES 13 A 459 ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR SEQRES 14 A 459 ASP SER LEU ASP ALA VAL ARG ARG CYS ALA LEU ILE ASN SEQRES 15 A 459 MET VAL PHE GLN MET GLY GLU THR GLY VAL ALA GLY PHE SEQRES 16 A 459 THR ASN SER LEU ARG MET LEU GLN GLN LYS ARG TRP ASP SEQRES 17 A 459 GLU ALA ALA VAL ASN LEU ALA LYS SER ARG TRP TYR ASN SEQRES 18 A 459 GLN THR PRO ASN ARG ALA LYS ARG VAL ILE THR THR PHE SEQRES 19 A 459 ARG THR GLY THR TRP ASP ALA TYR THR LYS ASP LEU LEU SEQRES 20 A 459 LEU PRO ILE LYS THR PRO THR THR ASN ALA VAL HIS LYS SEQRES 21 A 459 CYS ARG VAL HIS GLY LEU GLU ILE GLU GLY ARG ASP CYS SEQRES 22 A 459 GLY GLU ALA ALA ALA GLN TRP ILE THR SER PHE LEU LYS SEQRES 23 A 459 SER GLN PRO TYR ARG LEU VAL HIS PHE GLU PRO HIS MET SEQRES 24 A 459 ARG PRO ARG ARG PRO HIS GLN ILE ALA ASP LEU PHE ARG SEQRES 25 A 459 PRO LYS ASP GLN ILE ALA TYR SER ASP THR SER PRO PHE SEQRES 26 A 459 LEU ILE LEU SER GLU ALA SER LEU ALA ASP LEU ASN SER SEQRES 27 A 459 ARG LEU GLU LYS LYS VAL LYS ALA THR ASN PHE ARG PRO SEQRES 28 A 459 ASN ILE VAL ILE SER GLY CYS ASP VAL TYR ALA GLU ASP SEQRES 29 A 459 SER TRP ASP GLU LEU LEU ILE GLY ASP VAL GLU LEU LYS SEQRES 30 A 459 ARG VAL MET ALA CYS SER ARG CYS ILE LEU THR THR VAL SEQRES 31 A 459 ASP PRO ASP THR GLY VAL MET SER ARG LYS GLU PRO LEU SEQRES 32 A 459 GLU THR LEU LYS SER TYR ARG GLN CYS ASP PRO SER GLU SEQRES 33 A 459 ARG LYS LEU TYR GLY LYS SER PRO LEU PHE GLY GLN TYR SEQRES 34 A 459 PHE VAL LEU GLU ASN PRO GLY THR ILE LYS VAL GLY ASP SEQRES 35 A 459 PRO VAL TYR LEU LEU GLY GLN GLY THR VAL ASP HIS HIS SEQRES 36 A 459 HIS HIS HIS HIS HET MTE A1201 24 HET EFK A1202 3 HET B3P A1203 19 HET MOO A1204 5 HET MOO A1205 5 HET MOO A1206 5 HET MOO A1207 5 HET PO4 A1208 5 HETNAM MTE PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, HETNAM 2 MTE 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA- HETNAM 3 MTE ANTHRACEN-7-YLMETHYL)ESTER HETNAM EFK OXIDANYL(OXIDANYLIDENE)MOLYBDENUM HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MOO MOLYBDATE ION HETNAM PO4 PHOSPHATE ION HETSYN MOO MOLYBDATE FORMUL 2 MTE C10 H14 N5 O6 P S2 FORMUL 3 EFK H MO O2 FORMUL 4 B3P C11 H26 N2 O6 FORMUL 5 MOO 4(MO O4 2-) FORMUL 9 PO4 O4 P 3- FORMUL 10 HOH *439(H2 O) HELIX 1 AA1 GLU A 109 ILE A 115 5 7 HELIX 2 AA2 ASN A 1002 GLY A 1012 1 11 HELIX 3 AA3 SER A 1038 GLY A 1051 1 14 HELIX 4 AA4 THR A 1059 ARG A 1080 1 22 HELIX 5 AA5 LEU A 1084 LEU A 1091 1 8 HELIX 6 AA6 ASP A 1092 GLY A 1107 1 16 HELIX 7 AA7 GLY A 1107 GLY A 1113 1 7 HELIX 8 AA8 PHE A 1114 GLN A 1123 1 10 HELIX 9 AA9 ARG A 1125 ALA A 1134 1 10 HELIX 10 AB1 SER A 1136 THR A 1142 1 7 HELIX 11 AB2 THR A 1142 GLY A 1156 1 15 HELIX 12 AB3 GLY A 162 LYS A 174 1 13 HELIX 13 AB4 ARG A 191 ALA A 196 1 6 HELIX 14 AB5 GLU A 218 SER A 226 1 9 HELIX 15 AB6 LYS A 233 ARG A 238 5 6 HELIX 16 AB7 TYR A 249 TRP A 254 5 6 HELIX 17 AB8 CYS A 273 VAL A 278 5 6 HELIX 18 AB9 PRO A 290 ARG A 298 1 9 HELIX 19 AC1 ASP A 301 ARG A 305 5 5 SHEET 1 AA1 9 VAL A 72 VAL A 74 0 SHEET 2 AA1 9 GLN A 53 ILE A 63 -1 N ILE A 63 O VAL A 72 SHEET 3 AA1 9 PRO A 331 LEU A 334 -1 O VAL A 332 N GLY A 56 SHEET 4 AA1 9 GLU A 256 ILE A 259 -1 N LEU A 258 O TYR A 333 SHEET 5 AA1 9 VAL A 262 SER A 271 -1 O VAL A 262 N ILE A 259 SHEET 6 AA1 9 LEU A 313 ASN A 322 -1 O GLY A 315 N CYS A 270 SHEET 7 AA1 9 PHE A 213 SER A 217 -1 N ILE A 215 O GLN A 316 SHEET 8 AA1 9 ILE A 241 SER A 244 1 O ILE A 243 N LEU A 216 SHEET 9 AA1 9 GLN A 53 ILE A 63 -1 N ALA A 59 O VAL A 242 SHEET 1 AA2 4 LEU A 89 ARG A 90 0 SHEET 2 AA2 4 GLY A 83 SER A 86 -1 N SER A 86 O LEU A 89 SHEET 3 AA2 4 GLU A 76 THR A 80 -1 N GLU A 78 O ARG A 85 SHEET 4 AA2 4 GLY A 324 LYS A 327 -1 O GLY A 324 N CYS A 79 SHEET 1 AA3 4 TRP A 94 ILE A 97 0 SHEET 2 AA3 4 ARG A 179 HIS A 182 -1 O VAL A 181 N LEU A 95 SHEET 3 AA3 4 LEU A 154 ASP A 160 -1 N ARG A 159 O HIS A 182 SHEET 4 AA3 4 VAL A 146 VAL A 151 -1 N HIS A 147 O GLY A 158 SHEET 1 AA4 3 SER A 116 ASP A 120 0 SHEET 2 AA4 3 THR A 123 SER A 127 -1 O SER A 127 N SER A 116 SHEET 3 AA4 3 LEU A 134 PRO A 137 -1 O LEU A 136 N LEU A 124 SHEET 1 AA5 3 ARG A1014 LYS A1019 0 SHEET 2 AA5 3 TYR A1025 GLY A1028 -1 O THR A1026 N TYR A1018 SHEET 3 AA5 3 HIS A1031 THR A1034 -1 O LEU A1033 N TYR A1025 LINK SG ACYS A 273 MO EFK A1202 1555 1555 2.70 LINK S1' MTE A1201 MO EFK A1202 1555 1555 2.61 LINK S2' MTE A1201 MO EFK A1202 1555 1555 2.24 CISPEP 1 GLU A 289 PRO A 290 0 12.23 SITE 1 AC1 21 LYS A 67 SER A 68 ASP A 91 ARG A 92 SITE 2 AC1 21 ASP A 209 THR A 210 SER A 211 PRO A 212 SITE 3 AC1 21 PHE A 213 LEU A 214 PHE A 237 ARG A 238 SITE 4 AC1 21 ASN A 240 CYS A 270 SER A 271 CYS A 273 SITE 5 AC1 21 TYR A 317 EFK A1202 HOH A1359 HOH A1426 SITE 6 AC1 21 HOH A1536 SITE 1 AC2 5 SER A 271 ARG A 272 CYS A 273 THR A 276 SITE 2 AC2 5 MTE A1201 SITE 1 AC3 17 GLU A1011 ASP A1020 GLY A1030 HIS A1031 SITE 2 AC3 17 LEU A1032 ASP A1070 PHE A1104 GLN A1105 SITE 3 AC3 17 ARG A1145 HOH A1317 HOH A1320 HOH A1340 SITE 4 AC3 17 HOH A1365 HOH A1369 HOH A1398 HOH A1416 SITE 5 AC3 17 HOH A1477 SITE 1 AC4 3 ARG A1014 LEU A1015 LYS A1016 SITE 1 AC5 7 GLY A1113 PHE A1114 THR A1115 ASN A1116 SITE 2 AC5 7 SER A1117 ASN A1132 HOH A1417 SITE 1 AC6 7 ARG A 188 TRP A1126 HOH A1301 HOH A1304 SITE 2 AC6 7 HOH A1305 HOH A1450 HOH A1458 SITE 1 AC7 7 THR A1142 PRO A1143 ASN A1144 ARG A1145 SITE 2 AC7 7 HOH A1379 HOH A1491 HOH A1506 SITE 1 AC8 4 ARG A 200 PRO A 201 LYS A 202 HOH A1374 CRYST1 61.133 74.818 110.726 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009031 0.00000