HEADER HYDROLASE 23-JAN-18 6FJU TITLE RPN11 HOMOLOG FROM CALDIARCHAEUM SUBTERRANEUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT N11-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS CALDIARCHAEUM SUBTERRANEUM; SOURCE 3 ORGANISM_TAXID: 311458; SOURCE 4 GENE: CSUB_C1473, HGMM_F04B03C04, HGMM_F21D07C20, HGMM_F30C12C32; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEUBIQUITINATION, DEUBIQUITYLATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.D.FUCHS,R.ALBRECHT,J.MARTIN,M.D.HARTMANN REVDAT 2 17-JAN-24 6FJU 1 LINK REVDAT 1 25-JUL-18 6FJU 0 JRNL AUTH A.C.D.FUCHS,L.MALDONER,M.WOJTYNEK,M.D.HARTMANN,J.MARTIN JRNL TITL RPN11-MEDIATED UBIQUITIN PROCESSING IN AN ANCESTRAL ARCHAEAL JRNL TITL 2 UBIQUITINATION SYSTEM. JRNL REF NAT COMMUN V. 9 2696 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30002364 JRNL DOI 10.1038/S41467-018-05198-1 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2585 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3445 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2713 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : -1.28000 REMARK 3 B33 (A**2) : 0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.556 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2868 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2839 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3903 ; 1.890 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6531 ; 1.316 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 6.049 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;32.791 ;23.036 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;12.671 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.382 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3182 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 650 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1424 ; 2.075 ; 1.914 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1423 ; 2.063 ; 1.913 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1783 ; 3.035 ; 2.856 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1784 ; 3.035 ; 2.856 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1444 ; 2.986 ; 2.291 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1441 ; 2.972 ; 2.283 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2102 ; 4.549 ; 3.277 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3381 ; 7.852 ;17.183 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3287 ; 7.754 ;16.558 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 174 B 0 174 10008 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7403 35.9877 10.3022 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.0116 REMARK 3 T33: 0.0275 T12: 0.0036 REMARK 3 T13: -0.0257 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.7574 L22: 3.1802 REMARK 3 L33: 1.6768 L12: 0.0516 REMARK 3 L13: 0.1495 L23: 0.5695 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: 0.1251 S13: 0.1649 REMARK 3 S21: -0.2230 S22: -0.0677 S23: 0.0930 REMARK 3 S31: -0.2123 S32: -0.0082 S33: 0.1254 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 174 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1071 7.5538 5.0633 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0172 REMARK 3 T33: 0.0430 T12: 0.0093 REMARK 3 T13: -0.0282 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.5259 L22: 3.5541 REMARK 3 L33: 1.9242 L12: 0.7925 REMARK 3 L13: 0.4585 L23: 0.4525 REMARK 3 S TENSOR REMARK 3 S11: 0.1147 S12: 0.0392 S13: -0.2784 REMARK 3 S21: -0.2563 S22: -0.0235 S23: -0.0790 REMARK 3 S31: 0.3088 S32: 0.0765 S33: -0.0912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51685 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 33.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.860 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.29 REMARK 200 R MERGE FOR SHELL (I) : 0.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4OCL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 15% PEG 4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.22600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.85400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.80700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.85400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.22600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.80700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 LYS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 MET A -16 REMARK 465 SER A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 SER A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 LYS A 179 REMARK 465 THR A 180 REMARK 465 ARG A 181 REMARK 465 ASP A 182 REMARK 465 LYS A 183 REMARK 465 PRO A 184 REMARK 465 LEU A 185 REMARK 465 SER A 186 REMARK 465 GLU A 187 REMARK 465 GLU A 188 REMARK 465 GLN A 189 REMARK 465 GLU A 190 REMARK 465 SER A 191 REMARK 465 LEU A 192 REMARK 465 LEU A 193 REMARK 465 GLY A 194 REMARK 465 LYS A 195 REMARK 465 ALA A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 LEU A 199 REMARK 465 PHE A 200 REMARK 465 GLY A 201 REMARK 465 ALA A 202 REMARK 465 MET B -25 REMARK 465 LYS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 PRO B -17 REMARK 465 MET B -16 REMARK 465 SER B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 PRO B 52 REMARK 465 ALA B 53 REMARK 465 GLU B 175 REMARK 465 SER B 176 REMARK 465 SER B 177 REMARK 465 GLY B 178 REMARK 465 LYS B 179 REMARK 465 THR B 180 REMARK 465 ARG B 181 REMARK 465 ASP B 182 REMARK 465 LYS B 183 REMARK 465 PRO B 184 REMARK 465 LEU B 185 REMARK 465 SER B 186 REMARK 465 GLU B 187 REMARK 465 GLU B 188 REMARK 465 GLN B 189 REMARK 465 GLU B 190 REMARK 465 SER B 191 REMARK 465 LEU B 192 REMARK 465 LEU B 193 REMARK 465 GLY B 194 REMARK 465 LYS B 195 REMARK 465 ALA B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 LEU B 199 REMARK 465 PHE B 200 REMARK 465 GLY B 201 REMARK 465 ALA B 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 74 CD CE NZ REMARK 470 ARG A 124 CD NE CZ NH1 NH2 REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 470 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 49 O HOH B 402 2.05 REMARK 500 OD2 ASP A 168 O HOH A 402 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 19 CB SER A 19 OG 0.091 REMARK 500 SER B 33 CB SER B 33 OG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 MET B 106 CG - SD - CE ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 70 -38.58 -35.84 REMARK 500 ASP A 73 1.26 81.69 REMARK 500 ASP A 89 -174.21 66.27 REMARK 500 ARG A 124 19.80 59.15 REMARK 500 ASP B 73 17.38 56.67 REMARK 500 ASP B 89 -171.16 65.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 85 NE2 101.0 REMARK 620 3 ASP A 96 OD2 102.6 134.6 REMARK 620 4 HOH A 507 O 127.0 102.9 92.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 NE2 REMARK 620 2 HIS B 85 NE2 100.1 REMARK 620 3 ASP B 96 OD2 97.7 109.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 DBREF 6FJU A 1 202 UNP E6N8B9 E6N8B9_9ARCH 1 202 DBREF 6FJU B 1 202 UNP E6N8B9 E6N8B9_9ARCH 1 202 SEQADV 6FJU MET A -25 UNP E6N8B9 INITIATING METHIONINE SEQADV 6FJU LYS A -24 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS A -23 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS A -22 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS A -21 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS A -20 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS A -19 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS A -18 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU PRO A -17 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU MET A -16 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU SER A -15 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU ASP A -14 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU TYR A -13 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU ASP A -12 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU ILE A -11 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU PRO A -10 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU THR A -9 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU THR A -8 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU GLU A -7 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU ASN A -6 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU LEU A -5 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU TYR A -4 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU PHE A -3 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU GLN A -2 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU GLY A -1 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS A 0 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU MET B -25 UNP E6N8B9 INITIATING METHIONINE SEQADV 6FJU LYS B -24 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS B -23 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS B -22 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS B -21 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS B -20 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS B -19 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS B -18 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU PRO B -17 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU MET B -16 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU SER B -15 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU ASP B -14 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU TYR B -13 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU ASP B -12 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU ILE B -11 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU PRO B -10 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU THR B -9 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU THR B -8 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU GLU B -7 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU ASN B -6 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU LEU B -5 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU TYR B -4 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU PHE B -3 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU GLN B -2 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU GLY B -1 UNP E6N8B9 EXPRESSION TAG SEQADV 6FJU HIS B 0 UNP E6N8B9 EXPRESSION TAG SEQRES 1 A 228 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 228 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY HIS SEQRES 3 A 228 MET ARG VAL ARG ILE TYR PRO LEU ALA LEU ALA LYS VAL SEQRES 4 A 228 VAL LYS HIS ALA ALA SER SER LEU GLN ARG GLU VAL ALA SEQRES 5 A 228 GLY LEU LEU VAL GLY LYS SER ALA GLY LYS VAL LEU GLU SEQRES 6 A 228 ILE TRP ASP ALA VAL THR GLY GLU GLN TYR GLY THR PRO SEQRES 7 A 228 ALA TYR VAL GLN LEU ASP GLU MET VAL MET ALA LYS VAL SEQRES 8 A 228 ALA GLU GLU LEU SER LYS SER ASP LYS ASN LEU TYR ILE SEQRES 9 A 228 VAL GLY TRP TYR HIS SER HIS PRO GLY LEU ASP VAL PHE SEQRES 10 A 228 LEU SER PRO THR ASP ILE ASP THR GLN LYS ARG TYR GLN SEQRES 11 A 228 ALA MET PHE SER LYS ALA VAL ALA LEU VAL VAL ASP PRO SEQRES 12 A 228 VAL ASP TYR ALA LYS THR ARG ARG ILE SER SER LEU LYS SEQRES 13 A 228 PHE LYS VAL PHE GLN ILE SER LYS GLU GLY ARG VAL VAL SEQRES 14 A 228 SER LEU PRO VAL SER ILE GLY VAL HIS ARG ALA LYS LEU SEQRES 15 A 228 LEU GLU SER THR PHE HIS ALA LEU SER THR PHE ASP PHE SEQRES 16 A 228 MET HIS ILE LEU GLY GLU SER SER GLY LYS THR ARG ASP SEQRES 17 A 228 LYS PRO LEU SER GLU GLU GLN GLU SER LEU LEU GLY LYS SEQRES 18 A 228 ALA LYS LYS LEU PHE GLY ALA SEQRES 1 B 228 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 B 228 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY HIS SEQRES 3 B 228 MET ARG VAL ARG ILE TYR PRO LEU ALA LEU ALA LYS VAL SEQRES 4 B 228 VAL LYS HIS ALA ALA SER SER LEU GLN ARG GLU VAL ALA SEQRES 5 B 228 GLY LEU LEU VAL GLY LYS SER ALA GLY LYS VAL LEU GLU SEQRES 6 B 228 ILE TRP ASP ALA VAL THR GLY GLU GLN TYR GLY THR PRO SEQRES 7 B 228 ALA TYR VAL GLN LEU ASP GLU MET VAL MET ALA LYS VAL SEQRES 8 B 228 ALA GLU GLU LEU SER LYS SER ASP LYS ASN LEU TYR ILE SEQRES 9 B 228 VAL GLY TRP TYR HIS SER HIS PRO GLY LEU ASP VAL PHE SEQRES 10 B 228 LEU SER PRO THR ASP ILE ASP THR GLN LYS ARG TYR GLN SEQRES 11 B 228 ALA MET PHE SER LYS ALA VAL ALA LEU VAL VAL ASP PRO SEQRES 12 B 228 VAL ASP TYR ALA LYS THR ARG ARG ILE SER SER LEU LYS SEQRES 13 B 228 PHE LYS VAL PHE GLN ILE SER LYS GLU GLY ARG VAL VAL SEQRES 14 B 228 SER LEU PRO VAL SER ILE GLY VAL HIS ARG ALA LYS LEU SEQRES 15 B 228 LEU GLU SER THR PHE HIS ALA LEU SER THR PHE ASP PHE SEQRES 16 B 228 MET HIS ILE LEU GLY GLU SER SER GLY LYS THR ARG ASP SEQRES 17 B 228 LYS PRO LEU SER GLU GLU GLN GLU SER LEU LEU GLY LYS SEQRES 18 B 228 ALA LYS LYS LEU PHE GLY ALA HET ZN A 301 1 HET SO4 A 302 5 HET ZN B 301 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *245(H2 O) HELIX 1 AA1 TYR A 6 SER A 19 1 14 HELIX 2 AA2 GLU A 47 GLY A 50 5 4 HELIX 3 AA3 TYR A 54 LEU A 57 5 4 HELIX 4 AA4 ASP A 58 ASP A 73 1 16 HELIX 5 AA5 SER A 93 PHE A 107 1 15 HELIX 6 AA6 PRO A 117 ARG A 124 1 8 HELIX 7 AA7 ARG A 125 LEU A 129 5 5 HELIX 8 AA8 HIS A 152 PHE A 167 1 16 HELIX 9 AA9 TYR B 6 SER B 19 1 14 HELIX 10 AB1 GLU B 47 GLY B 50 5 4 HELIX 11 AB2 TYR B 54 LEU B 57 5 4 HELIX 12 AB3 ASP B 58 SER B 72 1 15 HELIX 13 AB4 SER B 93 PHE B 107 1 15 HELIX 14 AB5 PRO B 117 ARG B 124 1 8 HELIX 15 AB6 ARG B 125 LEU B 129 5 5 HELIX 16 AB7 HIS B 152 ASP B 168 1 17 SHEET 1 AA1 8 VAL A 142 SER A 144 0 SHEET 2 AA1 8 LYS A 130 ILE A 136 -1 N GLN A 135 O VAL A 143 SHEET 3 AA1 8 VAL A 111 ASP A 116 -1 N ASP A 116 O LYS A 130 SHEET 4 AA1 8 TYR A 77 SER A 84 1 N TRP A 81 O LEU A 113 SHEET 5 AA1 8 ALA A 26 ALA A 34 -1 N GLY A 31 O TYR A 77 SHEET 6 AA1 8 VAL A 37 THR A 45 -1 O VAL A 37 N ALA A 34 SHEET 7 AA1 8 VAL A 3 ILE A 5 1 N ARG A 4 O ILE A 40 SHEET 8 AA1 8 VAL A 147 ILE A 149 1 O SER A 148 N ILE A 5 SHEET 1 AA2 2 HIS A 171 ILE A 172 0 SHEET 2 AA2 2 HIS B 171 ILE B 172 1 O HIS B 171 N ILE A 172 SHEET 1 AA3 8 VAL B 142 SER B 144 0 SHEET 2 AA3 8 PHE B 131 ILE B 136 -1 N GLN B 135 O VAL B 143 SHEET 3 AA3 8 VAL B 111 VAL B 115 -1 N ALA B 112 O PHE B 134 SHEET 4 AA3 8 TYR B 77 SER B 84 1 N TRP B 81 O LEU B 113 SHEET 5 AA3 8 ALA B 26 ALA B 34 -1 N GLY B 31 O TYR B 77 SHEET 6 AA3 8 VAL B 37 THR B 45 -1 O VAL B 37 N ALA B 34 SHEET 7 AA3 8 VAL B 3 ILE B 5 1 N ARG B 4 O LEU B 38 SHEET 8 AA3 8 VAL B 147 ILE B 149 1 O SER B 148 N ILE B 5 LINK NE2 HIS A 83 ZN ZN A 301 1555 1555 2.17 LINK NE2 HIS A 85 ZN ZN A 301 1555 1555 2.08 LINK OD2 ASP A 96 ZN ZN A 301 1555 1555 2.15 LINK ZN ZN A 301 O HOH A 507 1555 1555 2.03 LINK NE2 HIS B 83 ZN ZN B 301 1555 1555 2.12 LINK NE2 HIS B 85 ZN ZN B 301 1555 1555 2.23 LINK OD2 ASP B 96 ZN ZN B 301 1555 1555 2.15 SITE 1 AC1 4 HIS A 83 HIS A 85 ASP A 96 HOH A 507 SITE 1 AC2 4 HIS A 152 ARG A 153 HOH A 443 HOH A 445 SITE 1 AC3 3 HIS B 83 HIS B 85 ASP B 96 CRYST1 64.452 65.614 99.708 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015515 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010029 0.00000