HEADER TRANSFERASE 10-OCT-17 6EOU TITLE O-GLCNAC TRANSFERASE TPR DOMAIN WITH THE INTELLECTUAL DISABILITY TITLE 2 ASSOCIATED MUTATION L254F COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: O-GLCNAC TRANSFERASE SUBUNIT P110,O-LINKED N- COMPND 6 ACETYLGLUCOSAMINE TRANSFERASE 110 KDA SUBUNIT,OGT; COMPND 7 EC: 2.4.1.255; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OGT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS INTELLECTUAL DISABILITY ASSOCIATED POINT MUTATION IN O-GLCNAC KEYWDS 2 TRANSFERASE TETRATRICOPEPTIDE DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GUNDOGDU,D.M.F.VAN AALTEN REVDAT 4 17-JAN-24 6EOU 1 REMARK REVDAT 3 11-JUL-18 6EOU 1 REMARK REVDAT 2 30-MAY-18 6EOU 1 JRNL REVDAT 1 09-MAY-18 6EOU 0 JRNL AUTH M.GUNDOGDU,S.LLABRES,A.GORELIK,A.T.FERENBACH,U.ZACHARIAE, JRNL AUTH 2 D.M.F.VAN AALTEN JRNL TITL THE O-GLCNAC TRANSFERASE INTELLECTUAL DISABILITY MUTATION JRNL TITL 2 L254F DISTORTS THE TPR HELIX. JRNL REF CELL CHEM BIOL V. 25 513 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 29606577 JRNL DOI 10.1016/J.CHEMBIOL.2018.03.004 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 51770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2582 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3810 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.175 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2770 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2522 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3768 ; 2.068 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5837 ; 1.186 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.239 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;37.935 ;24.255 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;14.651 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.492 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3159 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 578 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1380 ; 3.686 ; 3.490 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1379 ; 3.663 ; 3.488 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1726 ; 4.787 ; 5.216 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1727 ; 4.799 ; 5.217 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 4.915 ; 4.066 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1388 ; 4.906 ; 4.068 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2038 ; 7.450 ; 5.878 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3327 ;10.661 ;42.628 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3240 ; 8.785 ;42.100 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : 1ST DIAMOND BEAM SPLITTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 7.0.010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54404 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 46.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 7.0.010 REMARK 200 STARTING MODEL: 1W3B REMARK 200 REMARK 200 REMARK: ORTHORHOMBIC ROD AND DISC SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-HEPES AND 0.1 M MOPS-HCL PH REMARK 280 7,5, 0.04 M DIETHYLENE GLYCOL, 0.04 M TRIETHYLENE GLYCOL, 0.04 M REMARK 280 TETRAETHYLENE GLYCOL, 0.04 M PENTAETHYLENE GLYCOL, 20 % V/V REMARK 280 ETHYLENE GLYCOL AND 10 % W/V PEG 4000, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295.2K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.43500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.43500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 101.58100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 101.58100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.43500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.50000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 101.58100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.43500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.50000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 101.58100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 PRO A 24 REMARK 465 MET A 25 REMARK 465 GLU A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 HIS A 29 REMARK 465 ARG A 30 REMARK 465 GLU A 31 REMARK 465 TYR A 32 REMARK 465 GLN A 33 REMARK 465 ALA A 34 REMARK 465 GLY A 35 REMARK 465 ASP A 36 REMARK 465 PHE A 37 REMARK 465 GLU A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 GLU A 41 REMARK 465 ARG A 42 REMARK 465 HIS A 43 REMARK 465 CYS A 44 REMARK 465 MET A 45 REMARK 465 GLN A 46 REMARK 465 LEU A 47 REMARK 465 TRP A 48 REMARK 465 ARG A 49 REMARK 465 GLN A 50 REMARK 465 GLU A 51 REMARK 465 PRO A 52 REMARK 465 ASP A 53 REMARK 465 ASN A 54 REMARK 465 THR A 55 REMARK 465 GLY A 56 REMARK 465 VAL A 57 REMARK 465 MET A 401 REMARK 465 GLY A 402 REMARK 465 ASN A 403 REMARK 465 THR A 404 REMARK 465 LEU A 405 REMARK 465 LYS A 406 REMARK 465 GLU A 407 REMARK 465 MET A 408 REMARK 465 GLN A 409 REMARK 465 ASP A 410 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 64 CG1 CG2 CD1 REMARK 470 ARG A 70 NH1 NH2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 523 O HOH A 541 1.33 REMARK 500 O HOH A 535 O HOH A 730 1.60 REMARK 500 O HOH A 729 O HOH A 730 1.85 REMARK 500 O HOH A 696 O HOH A 726 1.89 REMARK 500 O HOH A 511 O HOH A 694 1.96 REMARK 500 OD1 ASP A 280 O HOH A 501 2.11 REMARK 500 O HOH A 614 O HOH A 749 2.11 REMARK 500 O HOH A 726 O HOH A 727 2.15 REMARK 500 OD1 ASP A 280 O HOH A 502 2.16 REMARK 500 O HOH A 629 O HOH A 646 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 665 O HOH A 726 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 270 CG TYR A 270 CD2 -0.090 REMARK 500 SER A 365 CB SER A 365 OG -0.085 REMARK 500 ASN A 400 CG ASN A 400 OD1 -0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 224 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 242 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 242 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 HIS A 291 C - N - CA ANGL. DEV. = -18.1 DEGREES REMARK 500 ASP A 294 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 294 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 PHE A 357 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 85 79.28 160.47 REMARK 500 PRO A 86 10.71 -60.42 REMARK 500 ARG A 172 71.78 -102.32 REMARK 500 GLN A 289 86.50 -151.56 REMARK 500 GLU A 359 41.34 -103.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 291 PHE A 292 -145.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 776 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 777 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 778 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 779 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 780 DISTANCE = 6.36 ANGSTROMS DBREF 6EOU A 26 410 UNP O15294 OGT1_HUMAN 26 410 SEQADV 6EOU GLY A 23 UNP O15294 EXPRESSION TAG SEQADV 6EOU PRO A 24 UNP O15294 EXPRESSION TAG SEQADV 6EOU MET A 25 UNP O15294 EXPRESSION TAG SEQADV 6EOU PHE A 254 UNP O15294 LEU 254 ENGINEERED MUTATION SEQRES 1 A 388 GLY PRO MET GLU LEU ALA HIS ARG GLU TYR GLN ALA GLY SEQRES 2 A 388 ASP PHE GLU ALA ALA GLU ARG HIS CYS MET GLN LEU TRP SEQRES 3 A 388 ARG GLN GLU PRO ASP ASN THR GLY VAL LEU LEU LEU LEU SEQRES 4 A 388 SER SER ILE HIS PHE GLN CYS ARG ARG LEU ASP ARG SER SEQRES 5 A 388 ALA HIS PHE SER THR LEU ALA ILE LYS GLN ASN PRO LEU SEQRES 6 A 388 LEU ALA GLU ALA TYR SER ASN LEU GLY ASN VAL TYR LYS SEQRES 7 A 388 GLU ARG GLY GLN LEU GLN GLU ALA ILE GLU HIS TYR ARG SEQRES 8 A 388 HIS ALA LEU ARG LEU LYS PRO ASP PHE ILE ASP GLY TYR SEQRES 9 A 388 ILE ASN LEU ALA ALA ALA LEU VAL ALA ALA GLY ASP MET SEQRES 10 A 388 GLU GLY ALA VAL GLN ALA TYR VAL SER ALA LEU GLN TYR SEQRES 11 A 388 ASN PRO ASP LEU TYR CYS VAL ARG SER ASP LEU GLY ASN SEQRES 12 A 388 LEU LEU LYS ALA LEU GLY ARG LEU GLU GLU ALA LYS ALA SEQRES 13 A 388 CYS TYR LEU LYS ALA ILE GLU THR GLN PRO ASN PHE ALA SEQRES 14 A 388 VAL ALA TRP SER ASN LEU GLY CYS VAL PHE ASN ALA GLN SEQRES 15 A 388 GLY GLU ILE TRP LEU ALA ILE HIS HIS PHE GLU LYS ALA SEQRES 16 A 388 VAL THR LEU ASP PRO ASN PHE LEU ASP ALA TYR ILE ASN SEQRES 17 A 388 LEU GLY ASN VAL LEU LYS GLU ALA ARG ILE PHE ASP ARG SEQRES 18 A 388 ALA VAL ALA ALA TYR LEU ARG ALA LEU SER PHE SER PRO SEQRES 19 A 388 ASN HIS ALA VAL VAL HIS GLY ASN LEU ALA CYS VAL TYR SEQRES 20 A 388 TYR GLU GLN GLY LEU ILE ASP LEU ALA ILE ASP THR TYR SEQRES 21 A 388 ARG ARG ALA ILE GLU LEU GLN PRO HIS PHE PRO ASP ALA SEQRES 22 A 388 TYR CYS ASN LEU ALA ASN ALA LEU LYS GLU LYS GLY SER SEQRES 23 A 388 VAL ALA GLU ALA GLU ASP CYS TYR ASN THR ALA LEU ARG SEQRES 24 A 388 LEU CYS PRO THR HIS ALA ASP SER LEU ASN ASN LEU ALA SEQRES 25 A 388 ASN ILE LYS ARG GLU GLN GLY ASN ILE GLU GLU ALA VAL SEQRES 26 A 388 ARG LEU TYR ARG LYS ALA LEU GLU VAL PHE PRO GLU PHE SEQRES 27 A 388 ALA ALA ALA HIS SER ASN LEU ALA SER VAL LEU GLN GLN SEQRES 28 A 388 GLN GLY LYS LEU GLN GLU ALA LEU MET HIS TYR LYS GLU SEQRES 29 A 388 ALA ILE ARG ILE SER PRO THR PHE ALA ASP ALA TYR SER SEQRES 30 A 388 ASN MET GLY ASN THR LEU LYS GLU MET GLN ASP FORMUL 2 HOH *280(H2 O) HELIX 1 AA1 LEU A 59 CYS A 68 1 10 HELIX 2 AA2 ARG A 70 GLN A 84 1 15 HELIX 3 AA3 LEU A 88 ARG A 102 1 15 HELIX 4 AA4 GLN A 104 LYS A 119 1 16 HELIX 5 AA5 PHE A 122 ALA A 136 1 15 HELIX 6 AA6 ASP A 138 ASN A 153 1 16 HELIX 7 AA7 LEU A 156 LEU A 170 1 15 HELIX 8 AA8 ARG A 172 GLN A 187 1 16 HELIX 9 AA9 PHE A 190 GLN A 204 1 15 HELIX 10 AB1 GLU A 206 ASP A 221 1 16 HELIX 11 AB2 PHE A 224 ALA A 238 1 15 HELIX 12 AB3 ILE A 240 SER A 255 1 16 HELIX 13 AB4 HIS A 258 GLN A 272 1 15 HELIX 14 AB5 LEU A 274 GLN A 289 1 16 HELIX 15 AB6 PHE A 292 GLY A 307 1 16 HELIX 16 AB7 SER A 308 CYS A 323 1 16 HELIX 17 AB8 HIS A 326 GLY A 341 1 16 HELIX 18 AB9 ASN A 342 PHE A 357 1 16 HELIX 19 AC1 PHE A 360 GLN A 374 1 15 HELIX 20 AC2 LYS A 376 SER A 391 1 16 HELIX 21 AC3 PRO A 392 ASN A 400 1 9 CRYST1 45.000 203.162 116.870 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022222 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008557 0.00000