HEADER SIGNALING PROTEIN 16-MAY-17 5O0M TITLE DEGLYCOSYLATED NOGO RECEPTOR WITH NATIVE DISULFIDE STRUCTURE 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULON-4 RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NOGO RECEPTOR,NGR,NOGO-66 RECEPTOR,NOGO66 RECEPTOR-1,NGR1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RTN4R, NGR1, NOGOR; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GNTI-/-; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 11 EXPRESSION_SYSTEM_CELL: HEK293; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PUPE; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PUPE107.03 KEYWDS NERVOUS SYSTEM, SIGNALING, LEUCINE-RICH REPEAT DOMAIN, DISULFIDE KEYWDS 2 STRUCTURE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.PRONKER,B.J.C.JANSSEN REVDAT 5 17-JAN-24 5O0M 1 HETSYN REVDAT 4 29-JUL-20 5O0M 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 15-NOV-17 5O0M 1 JRNL REVDAT 2 08-NOV-17 5O0M 1 JRNL REVDAT 1 18-OCT-17 5O0M 0 JRNL AUTH M.F.PRONKER,R.P.TAS,H.C.VLIEG,B.J.C.JANSSEN JRNL TITL NOGO RECEPTOR CRYSTAL STRUCTURES WITH A NATIVE DISULFIDE JRNL TITL 2 PATTERN SUGGEST A NOVEL MODE OF SELF-INTERACTION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 860 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29095159 JRNL DOI 10.1107/S2059798317013791 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 48088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.0594 - 4.8845 0.99 2858 171 0.1692 0.2210 REMARK 3 2 4.8845 - 3.8772 0.99 2752 137 0.1267 0.1749 REMARK 3 3 3.8772 - 3.3872 0.99 2730 153 0.1471 0.1598 REMARK 3 4 3.3872 - 3.0775 0.99 2722 138 0.1711 0.2591 REMARK 3 5 3.0775 - 2.8569 0.99 2689 150 0.1888 0.2358 REMARK 3 6 2.8569 - 2.6885 0.99 2676 144 0.1766 0.2144 REMARK 3 7 2.6885 - 2.5539 0.99 2695 123 0.1698 0.2264 REMARK 3 8 2.5539 - 2.4427 0.99 2637 153 0.1817 0.2123 REMARK 3 9 2.4427 - 2.3487 0.99 2655 143 0.1904 0.2335 REMARK 3 10 2.3487 - 2.2676 1.00 2694 130 0.1919 0.2306 REMARK 3 11 2.2676 - 2.1967 1.00 2666 149 0.2071 0.2482 REMARK 3 12 2.1967 - 2.1339 0.99 2627 140 0.2085 0.2368 REMARK 3 13 2.1339 - 2.0777 0.99 2693 143 0.2203 0.2719 REMARK 3 14 2.0777 - 2.0270 0.99 2607 145 0.2248 0.2689 REMARK 3 15 2.0270 - 1.9810 0.99 2706 121 0.2599 0.2878 REMARK 3 16 1.9810 - 1.9388 0.99 2594 142 0.2779 0.3256 REMARK 3 17 1.9388 - 1.9000 0.99 2659 146 0.3076 0.3371 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4828 REMARK 3 ANGLE : 0.869 6572 REMARK 3 CHIRALITY : 0.032 748 REMARK 3 PLANARITY : 0.003 861 REMARK 3 DIHEDRAL : 12.237 1752 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9145 60.7371 14.5110 REMARK 3 T TENSOR REMARK 3 T11: 0.4594 T22: 0.3434 REMARK 3 T33: 0.2502 T12: 0.1946 REMARK 3 T13: 0.0013 T23: 0.0784 REMARK 3 L TENSOR REMARK 3 L11: 5.2284 L22: 5.4813 REMARK 3 L33: 3.6350 L12: 1.0684 REMARK 3 L13: -1.2092 L23: -0.2643 REMARK 3 S TENSOR REMARK 3 S11: 0.1577 S12: 0.0764 S13: -0.5382 REMARK 3 S21: -0.4986 S22: -0.2897 S23: -0.6112 REMARK 3 S31: 0.7428 S32: 0.7058 S33: 0.0561 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.6162 70.2480 19.1294 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.1671 REMARK 3 T33: 0.0933 T12: 0.0369 REMARK 3 T13: -0.0405 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 5.7247 L22: 5.0034 REMARK 3 L33: 4.2791 L12: 0.7917 REMARK 3 L13: 0.0417 L23: -1.4009 REMARK 3 S TENSOR REMARK 3 S11: 0.0986 S12: -0.1733 S13: -0.1663 REMARK 3 S21: 0.0251 S22: -0.1796 S23: -0.1087 REMARK 3 S31: 0.2495 S32: 0.3070 S33: 0.0526 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.5981 76.3019 20.7199 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.1676 REMARK 3 T33: 0.1807 T12: 0.0660 REMARK 3 T13: -0.0173 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.0471 L22: 6.1266 REMARK 3 L33: 7.2862 L12: 2.5474 REMARK 3 L13: -1.0734 L23: -0.4284 REMARK 3 S TENSOR REMARK 3 S11: 0.1237 S12: -0.1262 S13: -0.0953 REMARK 3 S21: 0.4880 S22: -0.0867 S23: 0.2295 REMARK 3 S31: 0.2361 S32: -0.0554 S33: -0.0025 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.5603 80.6204 17.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.1701 REMARK 3 T33: 0.0517 T12: 0.0702 REMARK 3 T13: -0.0320 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 7.8293 L22: 8.3278 REMARK 3 L33: 8.1041 L12: 1.3887 REMARK 3 L13: -1.6970 L23: 1.4413 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.2884 S13: 0.0482 REMARK 3 S21: 0.2766 S22: 0.1044 S23: 0.1515 REMARK 3 S31: 0.0798 S32: -0.1133 S33: -0.1061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 176 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.3618 85.9890 14.3252 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.1346 REMARK 3 T33: 0.1195 T12: 0.0520 REMARK 3 T13: 0.0015 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.2065 L22: 4.8204 REMARK 3 L33: 6.3503 L12: 0.7808 REMARK 3 L13: 0.1276 L23: 1.1177 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.1239 S13: 0.1390 REMARK 3 S21: 0.3245 S22: -0.0788 S23: 0.1608 REMARK 3 S31: -0.1220 S32: -0.1787 S33: 0.0278 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.5102 92.3583 12.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.2450 T22: 0.1695 REMARK 3 T33: 0.1364 T12: 0.0749 REMARK 3 T13: -0.0553 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 7.7421 L22: 6.0532 REMARK 3 L33: 5.4964 L12: 1.8215 REMARK 3 L13: -0.0349 L23: 1.3639 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: -0.4136 S13: 0.4934 REMARK 3 S21: 0.3165 S22: -0.1842 S23: 0.2747 REMARK 3 S31: -0.3618 S32: -0.4468 S33: 0.0537 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 243 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.4317 97.6581 7.1925 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.2397 REMARK 3 T33: 0.2719 T12: 0.0367 REMARK 3 T13: -0.1076 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 3.5272 L22: 3.4745 REMARK 3 L33: 1.9086 L12: 3.3790 REMARK 3 L13: -0.2065 L23: -0.6290 REMARK 3 S TENSOR REMARK 3 S11: -0.1957 S12: 0.1515 S13: 0.6342 REMARK 3 S21: -0.3609 S22: -0.0981 S23: 0.0236 REMARK 3 S31: -0.6967 S32: -0.0466 S33: 0.2202 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 257 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -72.5754 97.6647 1.6430 REMARK 3 T TENSOR REMARK 3 T11: 0.2361 T22: 0.2234 REMARK 3 T33: 0.3288 T12: 0.0407 REMARK 3 T13: -0.0998 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 4.0602 L22: 3.8784 REMARK 3 L33: 5.1443 L12: 0.4404 REMARK 3 L13: 0.1204 L23: -1.8717 REMARK 3 S TENSOR REMARK 3 S11: -0.1604 S12: -0.2012 S13: 0.4747 REMARK 3 S21: -0.1746 S22: -0.0751 S23: 0.6913 REMARK 3 S31: -0.3280 S32: -0.3433 S33: 0.1930 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 307 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.8820 101.9224 13.1409 REMARK 3 T TENSOR REMARK 3 T11: 0.6585 T22: 0.8500 REMARK 3 T33: 1.0908 T12: 0.2274 REMARK 3 T13: -0.0468 T23: -0.2462 REMARK 3 L TENSOR REMARK 3 L11: 3.0232 L22: 6.6809 REMARK 3 L33: 2.7434 L12: 3.2764 REMARK 3 L13: 0.4996 L23: -2.3447 REMARK 3 S TENSOR REMARK 3 S11: 0.5664 S12: -0.1965 S13: 1.2528 REMARK 3 S21: 0.8743 S22: -0.1849 S23: 0.6082 REMARK 3 S31: -0.5710 S32: -0.6136 S33: -0.3374 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.4384 11.9946 16.6122 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.1913 REMARK 3 T33: 0.1516 T12: -0.0191 REMARK 3 T13: -0.0860 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 1.9424 L22: 3.1810 REMARK 3 L33: 1.5679 L12: -0.9128 REMARK 3 L13: -0.5964 L23: 0.6496 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: -0.2328 S13: -0.1995 REMARK 3 S21: 0.3170 S22: 0.0326 S23: -0.1676 REMARK 3 S31: 0.2634 S32: 0.0555 S33: -0.0725 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.2020 37.3857 9.0634 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.1381 REMARK 3 T33: 0.1233 T12: -0.0220 REMARK 3 T13: 0.0521 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.4832 L22: 2.5792 REMARK 3 L33: 1.7460 L12: -0.7369 REMARK 3 L13: 1.2910 L23: -0.7167 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: -0.1405 S13: 0.2221 REMARK 3 S21: 0.1094 S22: -0.0039 S23: 0.1889 REMARK 3 S31: -0.0959 S32: -0.1138 S33: 0.0225 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5O0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48250 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 56.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12900 REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.05400 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MIB BUFFER PH 5.0, 12.5% REMARK 280 PEG1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.30500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.56500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.56500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.30500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 SER A 313 REMARK 465 GLY A 314 REMARK 465 PRO A 315 REMARK 465 PHE A 316 REMARK 465 ARG A 317 REMARK 465 PRO A 318 REMARK 465 ILE A 319 REMARK 465 GLN A 320 REMARK 465 THR A 321 REMARK 465 SER A 322 REMARK 465 GLN A 323 REMARK 465 LEU A 324 REMARK 465 THR A 325 REMARK 465 ASP A 326 REMARK 465 GLU A 327 REMARK 465 GLU A 328 REMARK 465 LEU A 329 REMARK 465 LEU A 330 REMARK 465 ALA A 339 REMARK 465 ALA A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 SER B 313 REMARK 465 GLY B 314 REMARK 465 PRO B 315 REMARK 465 PHE B 316 REMARK 465 ARG B 317 REMARK 465 PRO B 318 REMARK 465 ILE B 319 REMARK 465 GLN B 320 REMARK 465 THR B 321 REMARK 465 SER B 322 REMARK 465 GLN B 323 REMARK 465 LEU B 324 REMARK 465 THR B 325 REMARK 465 ASP B 326 REMARK 465 GLU B 327 REMARK 465 GLU B 328 REMARK 465 LEU B 329 REMARK 465 LEU B 330 REMARK 465 SER B 331 REMARK 465 ALA B 339 REMARK 465 ALA B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 331 OG REMARK 470 VAL B 311 CG1 CG2 REMARK 470 LEU B 332 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 679 O HOH A 723 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 -160.68 -101.85 REMARK 500 ASN A 91 -151.99 -114.65 REMARK 500 HIS A 119 -44.85 70.93 REMARK 500 ASN A 164 -148.40 -115.69 REMARK 500 ASN A 188 -160.74 -121.11 REMARK 500 LEU A 201 59.32 -91.52 REMARK 500 ASN A 212 -158.58 -126.64 REMARK 500 LEU A 225 43.52 -98.60 REMARK 500 ASN A 236 -159.75 -132.80 REMARK 500 ASP A 265 -155.13 -130.33 REMARK 500 VAL A 285 75.76 -118.66 REMARK 500 ASN B 67 -158.95 -109.12 REMARK 500 ASN B 91 -150.70 -118.08 REMARK 500 HIS B 119 -43.13 71.05 REMARK 500 ASN B 164 -154.98 -115.62 REMARK 500 LEU B 177 58.73 -91.80 REMARK 500 ASN B 188 -160.24 -120.76 REMARK 500 ASN B 212 -156.67 -125.83 REMARK 500 LEU B 225 45.93 -95.37 REMARK 500 ASN B 236 -159.89 -132.88 REMARK 500 ASP B 265 -154.00 -130.54 REMARK 500 VAL B 285 75.79 -117.04 REMARK 500 VAL B 311 -158.69 -86.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 5O0M A 26 337 UNP Q99PI8 RTN4R_MOUSE 26 337 DBREF 5O0M B 26 337 UNP Q99PI8 RTN4R_MOUSE 26 337 SEQADV 5O0M GLY A 24 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M SER A 25 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M ALA A 338 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M ALA A 339 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M ALA A 340 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS A 341 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS A 342 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS A 343 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS A 344 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS A 345 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS A 346 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M GLY B 24 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M SER B 25 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M ALA B 338 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M ALA B 339 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M ALA B 340 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS B 341 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS B 342 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS B 343 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS B 344 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS B 345 UNP Q99PI8 EXPRESSION TAG SEQADV 5O0M HIS B 346 UNP Q99PI8 EXPRESSION TAG SEQRES 1 A 323 GLY SER PRO CYS PRO GLY ALA CYS VAL CYS TYR ASN GLU SEQRES 2 A 323 PRO LYS VAL THR THR SER CYS PRO GLN GLN GLY LEU GLN SEQRES 3 A 323 ALA VAL PRO THR GLY ILE PRO ALA SER SER GLN ARG ILE SEQRES 4 A 323 PHE LEU HIS GLY ASN ARG ILE SER HIS VAL PRO ALA ALA SEQRES 5 A 323 SER PHE GLN SER CYS ARG ASN LEU THR ILE LEU TRP LEU SEQRES 6 A 323 HIS SER ASN ALA LEU ALA ARG ILE ASP ALA ALA ALA PHE SEQRES 7 A 323 THR GLY LEU THR LEU LEU GLU GLN LEU ASP LEU SER ASP SEQRES 8 A 323 ASN ALA GLN LEU HIS VAL VAL ASP PRO THR THR PHE HIS SEQRES 9 A 323 GLY LEU GLY HIS LEU HIS THR LEU HIS LEU ASP ARG CYS SEQRES 10 A 323 GLY LEU ARG GLU LEU GLY PRO GLY LEU PHE ARG GLY LEU SEQRES 11 A 323 ALA ALA LEU GLN TYR LEU TYR LEU GLN ASP ASN ASN LEU SEQRES 12 A 323 GLN ALA LEU PRO ASP ASN THR PHE ARG ASP LEU GLY ASN SEQRES 13 A 323 LEU THR HIS LEU PHE LEU HIS GLY ASN ARG ILE PRO SER SEQRES 14 A 323 VAL PRO GLU HIS ALA PHE ARG GLY LEU HIS SER LEU ASP SEQRES 15 A 323 ARG LEU LEU LEU HIS GLN ASN HIS VAL ALA ARG VAL HIS SEQRES 16 A 323 PRO HIS ALA PHE ARG ASP LEU GLY ARG LEU MET THR LEU SEQRES 17 A 323 TYR LEU PHE ALA ASN ASN LEU SER MET LEU PRO ALA GLU SEQRES 18 A 323 VAL LEU MET PRO LEU ARG SER LEU GLN TYR LEU ARG LEU SEQRES 19 A 323 ASN ASP ASN PRO TRP VAL CYS ASP CYS ARG ALA ARG PRO SEQRES 20 A 323 LEU TRP ALA TRP LEU GLN LYS PHE ARG GLY SER SER SER SEQRES 21 A 323 GLU VAL PRO CYS ASN LEU PRO GLN ARG LEU ALA ASP ARG SEQRES 22 A 323 ASP LEU LYS ARG LEU ALA ALA SER ASP LEU GLU GLY CYS SEQRES 23 A 323 ALA VAL ALA SER GLY PRO PHE ARG PRO ILE GLN THR SER SEQRES 24 A 323 GLN LEU THR ASP GLU GLU LEU LEU SER LEU PRO LYS CYS SEQRES 25 A 323 CYS GLN ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 323 GLY SER PRO CYS PRO GLY ALA CYS VAL CYS TYR ASN GLU SEQRES 2 B 323 PRO LYS VAL THR THR SER CYS PRO GLN GLN GLY LEU GLN SEQRES 3 B 323 ALA VAL PRO THR GLY ILE PRO ALA SER SER GLN ARG ILE SEQRES 4 B 323 PHE LEU HIS GLY ASN ARG ILE SER HIS VAL PRO ALA ALA SEQRES 5 B 323 SER PHE GLN SER CYS ARG ASN LEU THR ILE LEU TRP LEU SEQRES 6 B 323 HIS SER ASN ALA LEU ALA ARG ILE ASP ALA ALA ALA PHE SEQRES 7 B 323 THR GLY LEU THR LEU LEU GLU GLN LEU ASP LEU SER ASP SEQRES 8 B 323 ASN ALA GLN LEU HIS VAL VAL ASP PRO THR THR PHE HIS SEQRES 9 B 323 GLY LEU GLY HIS LEU HIS THR LEU HIS LEU ASP ARG CYS SEQRES 10 B 323 GLY LEU ARG GLU LEU GLY PRO GLY LEU PHE ARG GLY LEU SEQRES 11 B 323 ALA ALA LEU GLN TYR LEU TYR LEU GLN ASP ASN ASN LEU SEQRES 12 B 323 GLN ALA LEU PRO ASP ASN THR PHE ARG ASP LEU GLY ASN SEQRES 13 B 323 LEU THR HIS LEU PHE LEU HIS GLY ASN ARG ILE PRO SER SEQRES 14 B 323 VAL PRO GLU HIS ALA PHE ARG GLY LEU HIS SER LEU ASP SEQRES 15 B 323 ARG LEU LEU LEU HIS GLN ASN HIS VAL ALA ARG VAL HIS SEQRES 16 B 323 PRO HIS ALA PHE ARG ASP LEU GLY ARG LEU MET THR LEU SEQRES 17 B 323 TYR LEU PHE ALA ASN ASN LEU SER MET LEU PRO ALA GLU SEQRES 18 B 323 VAL LEU MET PRO LEU ARG SER LEU GLN TYR LEU ARG LEU SEQRES 19 B 323 ASN ASP ASN PRO TRP VAL CYS ASP CYS ARG ALA ARG PRO SEQRES 20 B 323 LEU TRP ALA TRP LEU GLN LYS PHE ARG GLY SER SER SER SEQRES 21 B 323 GLU VAL PRO CYS ASN LEU PRO GLN ARG LEU ALA ASP ARG SEQRES 22 B 323 ASP LEU LYS ARG LEU ALA ALA SER ASP LEU GLU GLY CYS SEQRES 23 B 323 ALA VAL ALA SER GLY PRO PHE ARG PRO ILE GLN THR SER SEQRES 24 B 323 GLN LEU THR ASP GLU GLU LEU LEU SER LEU PRO LYS CYS SEQRES 25 B 323 CYS GLN ALA ALA ALA HIS HIS HIS HIS HIS HIS HET NAG A 401 28 HET NAG A 402 28 HET NAG A 403 28 HET NAG B 401 28 HET NAG B 402 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 8 HOH *421(H2 O) HELIX 1 AA1 PRO A 242 MET A 247 1 6 HELIX 2 AA2 ASP A 265 ARG A 267 5 3 HELIX 3 AA3 ALA A 268 PHE A 278 1 11 HELIX 4 AA4 PRO A 290 ALA A 294 5 5 HELIX 5 AA5 ASP A 297 LEU A 301 5 5 HELIX 6 AA6 ALA A 302 GLU A 307 5 6 HELIX 7 AA7 PRO A 333 GLN A 337 5 5 HELIX 8 AA8 PRO B 242 MET B 247 1 6 HELIX 9 AA9 ASP B 265 ARG B 267 5 3 HELIX 10 AB1 ALA B 268 PHE B 278 1 11 HELIX 11 AB2 PRO B 290 ALA B 294 5 5 HELIX 12 AB3 ASP B 297 LEU B 301 5 5 HELIX 13 AB4 ALA B 302 GLU B 307 5 6 HELIX 14 AB5 PRO B 333 GLN B 337 5 5 SHEET 1 AA112 VAL A 32 TYR A 34 0 SHEET 2 AA112 THR A 40 SER A 42 -1 O SER A 42 N VAL A 32 SHEET 3 AA112 ARG A 61 PHE A 63 1 O ARG A 61 N THR A 41 SHEET 4 AA112 ILE A 85 TRP A 87 1 O ILE A 85 N ILE A 62 SHEET 5 AA112 GLN A 109 ASP A 111 1 O ASP A 111 N LEU A 86 SHEET 6 AA112 THR A 134 HIS A 136 1 O HIS A 136 N LEU A 110 SHEET 7 AA112 TYR A 158 TYR A 160 1 O TYR A 160 N LEU A 135 SHEET 8 AA112 HIS A 182 PHE A 184 1 O HIS A 182 N LEU A 159 SHEET 9 AA112 ARG A 206 LEU A 208 1 O ARG A 206 N LEU A 183 SHEET 10 AA112 THR A 230 TYR A 232 1 O THR A 230 N LEU A 207 SHEET 11 AA112 TYR A 254 ARG A 256 1 O TYR A 254 N LEU A 231 SHEET 12 AA112 SER A 281 SER A 282 1 O SER A 281 N LEU A 255 SHEET 1 AA2 2 HIS A 71 VAL A 72 0 SHEET 2 AA2 2 ARG A 95 ILE A 96 1 O ARG A 95 N VAL A 72 SHEET 1 AA3 2 TRP A 262 VAL A 263 0 SHEET 2 AA3 2 CYS A 287 LEU A 289 1 O ASN A 288 N TRP A 262 SHEET 1 AA412 VAL B 32 TYR B 34 0 SHEET 2 AA412 THR B 40 SER B 42 -1 O THR B 40 N TYR B 34 SHEET 3 AA412 ARG B 61 PHE B 63 1 O ARG B 61 N THR B 41 SHEET 4 AA412 ILE B 85 TRP B 87 1 O TRP B 87 N ILE B 62 SHEET 5 AA412 GLN B 109 ASP B 111 1 O ASP B 111 N LEU B 86 SHEET 6 AA412 THR B 134 HIS B 136 1 O HIS B 136 N LEU B 110 SHEET 7 AA412 TYR B 158 TYR B 160 1 O TYR B 160 N LEU B 135 SHEET 8 AA412 HIS B 182 PHE B 184 1 O PHE B 184 N LEU B 159 SHEET 9 AA412 ARG B 206 LEU B 208 1 O LEU B 208 N LEU B 183 SHEET 10 AA412 THR B 230 TYR B 232 1 O THR B 230 N LEU B 207 SHEET 11 AA412 TYR B 254 ARG B 256 1 O TYR B 254 N LEU B 231 SHEET 12 AA412 SER B 281 SER B 282 1 O SER B 281 N LEU B 255 SHEET 1 AA5 2 HIS B 71 VAL B 72 0 SHEET 2 AA5 2 ARG B 95 ILE B 96 1 O ARG B 95 N VAL B 72 SHEET 1 AA6 2 TRP B 262 VAL B 263 0 SHEET 2 AA6 2 CYS B 287 LEU B 289 1 O ASN B 288 N TRP B 262 SSBOND 1 CYS A 27 CYS A 33 1555 1555 2.04 SSBOND 2 CYS A 31 CYS A 43 1555 1555 2.03 SSBOND 3 CYS A 264 CYS A 287 1555 1555 2.04 SSBOND 4 CYS A 266 CYS A 335 1555 1555 2.04 SSBOND 5 CYS A 309 CYS A 336 1555 1555 2.04 SSBOND 6 CYS B 27 CYS B 33 1555 1555 2.04 SSBOND 7 CYS B 31 CYS B 43 1555 1555 2.03 SSBOND 8 CYS B 264 CYS B 287 1555 1555 2.03 SSBOND 9 CYS B 266 CYS B 335 1555 1555 2.03 SSBOND 10 CYS B 309 CYS B 336 1555 1555 2.03 LINK ND2 ASN A 82 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 179 C1 NAG A 402 1555 1555 1.44 LINK ND2 ASN A 237 C1 NAG A 403 1555 1555 1.44 LINK ND2 ASN B 82 C1 NAG B 401 1555 1555 1.45 LINK ND2 ASN B 179 C1 NAG B 402 1555 1555 1.44 CISPEP 1 GLU A 36 PRO A 37 0 1.30 CISPEP 2 LEU A 289 PRO A 290 0 -5.71 CISPEP 3 GLU B 36 PRO B 37 0 -0.55 CISPEP 4 LEU B 289 PRO B 290 0 -3.33 CRYST1 46.610 112.070 115.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008686 0.00000