HEADER HYDROLASE 15-OCT-16 5M3O TITLE HTRA2 A141S MUTANT STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE HTRA2, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIGH TEMPERATURE REQUIREMENT PROTEIN A2,HTRA2,OMI STRESS- COMPND 5 REGULATED ENDOPROTEASE,SERINE PROTEASE 25,SERINE PROTEINASE OMI; COMPND 6 EC: 3.4.21.108; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HTRA2, OMI, PRSS25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE PARKINSON DISEASE MITOCHONDRIA PDZ DOMAIN DYNAMICS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MERSKI,P.J.BARBOSA PEREIRA,S.MACEDO-RIBEIRO REVDAT 3 17-JAN-24 5M3O 1 REMARK REVDAT 2 16-OCT-19 5M3O 1 REMARK REVDAT 1 25-OCT-17 5M3O 0 JRNL AUTH M.MERSKI,C.MOREIRA,R.M.ABREU,M.J.RAMOS,P.A.FERNANDES, JRNL AUTH 2 L.M.MARTINS,P.J.B.PEREIRA,S.MACEDO-RIBEIRO JRNL TITL MOLECULAR MOTION REGULATES THE ACTIVITY OF THE MITOCHONDRIAL JRNL TITL 2 SERINE PROTEASE HTRA2. JRNL REF CELL DEATH DIS V. 8 E3119 2017 JRNL REFN ISSN 2041-4889 JRNL PMID 29022916 JRNL DOI 10.1038/CDDIS.2017.487 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.6061 - 3.9805 0.95 2734 136 0.1098 0.1660 REMARK 3 2 3.9805 - 3.1666 0.95 2719 143 0.1332 0.1773 REMARK 3 3 3.1666 - 2.7684 0.95 2742 145 0.1733 0.2039 REMARK 3 4 2.7684 - 2.5163 0.95 2685 151 0.1969 0.1859 REMARK 3 5 2.5163 - 2.3364 0.95 2712 154 0.1904 0.2372 REMARK 3 6 2.3364 - 2.1990 0.94 2728 160 0.2038 0.2005 REMARK 3 7 2.1990 - 2.0891 0.95 2692 143 0.2073 0.2355 REMARK 3 8 2.0891 - 1.9983 0.95 2746 146 0.2084 0.2108 REMARK 3 9 1.9983 - 1.9215 0.94 2695 163 0.2129 0.2386 REMARK 3 10 1.9215 - 1.8553 0.95 2731 137 0.2244 0.2571 REMARK 3 11 1.8553 - 1.7973 0.96 2731 120 0.2392 0.2319 REMARK 3 12 1.7973 - 1.7460 0.95 2724 154 0.2653 0.2885 REMARK 3 13 1.7460 - 1.7001 0.95 2737 131 0.3100 0.3172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2222 REMARK 3 ANGLE : 1.075 3039 REMARK 3 CHIRALITY : 0.061 372 REMARK 3 PLANARITY : 0.007 395 REMARK 3 DIHEDRAL : 14.236 1355 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4054 -44.9934 -15.5988 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.1171 REMARK 3 T33: 0.1551 T12: 0.0308 REMARK 3 T13: 0.0164 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 4.9058 L22: 1.3968 REMARK 3 L33: 1.6328 L12: 1.3285 REMARK 3 L13: 2.2763 L23: 0.2412 REMARK 3 S TENSOR REMARK 3 S11: -0.1696 S12: -0.0056 S13: 0.1952 REMARK 3 S21: 0.0561 S22: 0.0335 S23: -0.1309 REMARK 3 S31: -0.0758 S32: 0.0362 S33: 0.0607 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5263 -36.8335 1.2756 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.2267 REMARK 3 T33: 0.2436 T12: -0.0117 REMARK 3 T13: -0.0282 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 5.0295 L22: 0.4819 REMARK 3 L33: 5.3042 L12: 1.5570 REMARK 3 L13: 5.1658 L23: 1.6000 REMARK 3 S TENSOR REMARK 3 S11: 0.4883 S12: -0.5713 S13: -0.2010 REMARK 3 S21: 0.0393 S22: -0.1227 S23: 0.0602 REMARK 3 S31: 0.7224 S32: -0.6679 S33: -0.3224 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0648 -33.2016 -10.7208 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.2018 REMARK 3 T33: 0.2429 T12: -0.0133 REMARK 3 T13: -0.0586 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.0051 L22: 1.4209 REMARK 3 L33: 1.4890 L12: 0.9166 REMARK 3 L13: 1.1257 L23: 0.3406 REMARK 3 S TENSOR REMARK 3 S11: -0.1187 S12: -0.0611 S13: 0.2877 REMARK 3 S21: 0.1105 S22: 0.0085 S23: -0.2431 REMARK 3 S31: -0.0956 S32: 0.2926 S33: 0.0816 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0625 -34.5305 -9.4823 REMARK 3 T TENSOR REMARK 3 T11: 0.1401 T22: 0.1240 REMARK 3 T33: 0.2092 T12: 0.0101 REMARK 3 T13: -0.0373 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 3.4383 L22: 2.7713 REMARK 3 L33: 5.6171 L12: 1.6634 REMARK 3 L13: -1.5317 L23: 1.7963 REMARK 3 S TENSOR REMARK 3 S11: 0.1950 S12: -0.2180 S13: 0.3788 REMARK 3 S21: 0.1396 S22: -0.1222 S23: 0.0879 REMARK 3 S31: -0.2265 S32: -0.1441 S33: 0.0026 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5626 -26.8554 -1.4339 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.2625 REMARK 3 T33: 0.5469 T12: 0.0360 REMARK 3 T13: -0.1398 T23: -0.1432 REMARK 3 L TENSOR REMARK 3 L11: 0.7843 L22: 1.3116 REMARK 3 L33: 4.3410 L12: 0.1993 REMARK 3 L13: 1.0294 L23: 1.4366 REMARK 3 S TENSOR REMARK 3 S11: -0.1611 S12: -0.3233 S13: 0.6412 REMARK 3 S21: 0.1473 S22: -0.1987 S23: 0.3218 REMARK 3 S31: -0.2638 S32: -0.2586 S33: 0.2751 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8121 -21.2896 11.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.3466 T22: 0.3733 REMARK 3 T33: 0.5529 T12: 0.0245 REMARK 3 T13: -0.1535 T23: -0.1864 REMARK 3 L TENSOR REMARK 3 L11: 5.5748 L22: 2.6136 REMARK 3 L33: 4.1651 L12: 0.3713 REMARK 3 L13: 3.2143 L23: 0.6546 REMARK 3 S TENSOR REMARK 3 S11: 0.2717 S12: -0.3162 S13: -0.0339 REMARK 3 S21: -0.1464 S22: -0.4510 S23: 0.8138 REMARK 3 S31: 0.0491 S32: -0.5006 S33: 0.1814 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37293 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 63.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LCY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 1 M LICL, AND 15-20% REMARK 280 (W/V) PEG-6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.14550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.33272 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.65933 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 42.14550 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.33272 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.65933 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 42.14550 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.33272 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.65933 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.66543 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 85.31867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 48.66543 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 85.31867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 48.66543 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 85.31867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -42.14550 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -72.99815 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 42.14550 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -72.99815 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 133 REMARK 465 ALA A 134 REMARK 465 VAL A 135 REMARK 465 PRO A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 PRO A 139 REMARK 465 ARG A 283 REMARK 465 ASP A 284 REMARK 465 LEU A 285 REMARK 465 GLY A 286 REMARK 465 LEU A 287 REMARK 465 PRO A 288 REMARK 465 GLN A 289 REMARK 465 THR A 290 REMARK 465 GLY A 345 REMARK 465 GLU A 346 REMARK 465 LYS A 347 REMARK 465 LYS A 348 REMARK 465 ASN A 349 REMARK 465 SER A 350 REMARK 465 SER A 351 REMARK 465 SER A 352 REMARK 465 GLY A 353 REMARK 465 ILE A 354 REMARK 465 SER A 355 REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 GLU A 381 REMARK 465 PRO A 382 REMARK 465 SER A 383 REMARK 465 PHE A 384 REMARK 465 PRO A 385 REMARK 465 ASP A 386 REMARK 465 VAL A 387 REMARK 465 ARG A 442 REMARK 465 ARG A 443 REMARK 465 GLY A 444 REMARK 465 ARG A 445 REMARK 465 GLU A 446 REMARK 465 GLU A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 267 CG CD OE1 NE2 REMARK 470 GLN A 358 CG CD OE1 NE2 REMARK 470 LEU A 374 CG CD1 CD2 REMARK 470 GLN A 378 CG CD OE1 NE2 REMARK 470 GLN A 388 CG CD OE1 NE2 REMARK 470 LEU A 392 CG CD1 CD2 REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 GLN A 419 CG CD OE1 NE2 REMARK 470 GLU A 425 CG CD OE1 OE2 REMARK 470 ARG A 432 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 457 O - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 148 57.80 -95.75 REMARK 500 HIS A 170 77.36 -113.64 REMARK 500 ALA A 201 -136.00 49.05 REMARK 500 SER A 212 1.34 -67.68 REMARK 500 PRO A 281 -175.95 -62.54 REMARK 500 HIS A 389 169.85 175.66 REMARK 500 LEU A 414 -70.94 -65.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 457 11.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M3N RELATED DB: PDB REMARK 900 RELATED ID: 5TNZ RELATED DB: PDB REMARK 900 RELATED ID: 5TO0 RELATED DB: PDB REMARK 900 RELATED ID: 5TNY RELATED DB: PDB REMARK 900 RELATED ID: 5TO1 RELATED DB: PDB DBREF 5M3O A 134 458 UNP O43464 HTRA2_HUMAN 134 458 SEQADV 5M3O MET A 133 UNP O43464 INITIATING METHIONINE SEQADV 5M3O SER A 141 UNP O43464 ALA 141 ENGINEERED MUTATION SEQADV 5M3O HIS A 459 UNP O43464 EXPRESSION TAG SEQADV 5M3O GLU A 460 UNP O43464 EXPRESSION TAG SEQADV 5M3O HIS A 461 UNP O43464 EXPRESSION TAG SEQADV 5M3O HIS A 462 UNP O43464 EXPRESSION TAG SEQADV 5M3O HIS A 463 UNP O43464 EXPRESSION TAG SEQADV 5M3O HIS A 464 UNP O43464 EXPRESSION TAG SEQADV 5M3O HIS A 465 UNP O43464 EXPRESSION TAG SEQADV 5M3O HIS A 466 UNP O43464 EXPRESSION TAG SEQRES 1 A 334 MET ALA VAL PRO SER PRO PRO PRO SER SER PRO ARG SER SEQRES 2 A 334 GLN TYR ASN PHE ILE ALA ASP VAL VAL GLU LYS THR ALA SEQRES 3 A 334 PRO ALA VAL VAL TYR ILE GLU ILE LEU ASP ARG HIS PRO SEQRES 4 A 334 PHE LEU GLY ARG GLU VAL PRO ILE SER ASN GLY SER GLY SEQRES 5 A 334 PHE VAL VAL ALA ALA ASP GLY LEU ILE VAL THR ASN ALA SEQRES 6 A 334 HIS VAL VAL ALA ASP ARG ARG ARG VAL ARG VAL ARG LEU SEQRES 7 A 334 LEU SER GLY ASP THR TYR GLU ALA VAL VAL THR ALA VAL SEQRES 8 A 334 ASP PRO VAL ALA ASP ILE ALA THR LEU ARG ILE GLN THR SEQRES 9 A 334 LYS GLU PRO LEU PRO THR LEU PRO LEU GLY ARG SER ALA SEQRES 10 A 334 ASP VAL ARG GLN GLY GLU PHE VAL VAL ALA MET GLY SER SEQRES 11 A 334 PRO PHE ALA LEU GLN ASN THR ILE THR SER GLY ILE VAL SEQRES 12 A 334 SER SER ALA GLN ARG PRO ALA ARG ASP LEU GLY LEU PRO SEQRES 13 A 334 GLN THR ASN VAL GLU TYR ILE GLN THR ASP ALA ALA ILE SEQRES 14 A 334 ASP PHE GLY ASN SER GLY GLY PRO LEU VAL ASN LEU ASP SEQRES 15 A 334 GLY GLU VAL ILE GLY VAL ASN THR MET LYS VAL THR ALA SEQRES 16 A 334 GLY ILE SER PHE ALA ILE PRO SER ASP ARG LEU ARG GLU SEQRES 17 A 334 PHE LEU HIS ARG GLY GLU LYS LYS ASN SER SER SER GLY SEQRES 18 A 334 ILE SER GLY SER GLN ARG ARG TYR ILE GLY VAL MET MET SEQRES 19 A 334 LEU THR LEU SER PRO SER ILE LEU ALA GLU LEU GLN LEU SEQRES 20 A 334 ARG GLU PRO SER PHE PRO ASP VAL GLN HIS GLY VAL LEU SEQRES 21 A 334 ILE HIS LYS VAL ILE LEU GLY SER PRO ALA HIS ARG ALA SEQRES 22 A 334 GLY LEU ARG PRO GLY ASP VAL ILE LEU ALA ILE GLY GLU SEQRES 23 A 334 GLN MET VAL GLN ASN ALA GLU ASP VAL TYR GLU ALA VAL SEQRES 24 A 334 ARG THR GLN SER GLN LEU ALA VAL GLN ILE ARG ARG GLY SEQRES 25 A 334 ARG GLU THR LEU THR LEU TYR VAL THR PRO GLU VAL THR SEQRES 26 A 334 GLU HIS GLU HIS HIS HIS HIS HIS HIS HET MES A 501 12 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 MES C6 H13 N O4 S FORMUL 3 HOH *118(H2 O) HELIX 1 AA1 PRO A 143 ASN A 148 1 6 HELIX 2 AA2 ASN A 148 ALA A 158 1 11 HELIX 3 AA3 ASN A 196 ALA A 201 1 6 HELIX 4 AA4 ARG A 247 VAL A 251 5 5 HELIX 5 AA5 SER A 335 LEU A 342 1 8 HELIX 6 AA6 SER A 370 ARG A 380 1 11 HELIX 7 AA7 SER A 400 ALA A 405 1 6 HELIX 8 AA8 ASN A 423 GLN A 434 1 12 SHEET 1 AA1 7 VAL A 161 HIS A 170 0 SHEET 2 AA1 7 ARG A 175 ALA A 188 -1 O SER A 180 N ILE A 166 SHEET 3 AA1 7 LEU A 192 THR A 195 -1 O VAL A 194 N PHE A 185 SHEET 4 AA1 7 ILE A 229 ARG A 233 -1 O LEU A 232 N ILE A 193 SHEET 5 AA1 7 THR A 215 ASP A 224 -1 N ASP A 224 O ILE A 229 SHEET 6 AA1 7 ARG A 205 LEU A 210 -1 N VAL A 206 O ALA A 218 SHEET 7 AA1 7 VAL A 161 HIS A 170 -1 N TYR A 163 O ARG A 209 SHEET 1 AA2 6 THR A 271 ILE A 274 0 SHEET 2 AA2 6 PHE A 256 ALA A 259 -1 N ALA A 259 O THR A 271 SHEET 3 AA2 6 PRO A 309 VAL A 311 -1 O VAL A 311 N VAL A 258 SHEET 4 AA2 6 VAL A 317 THR A 326 -1 O ILE A 318 N LEU A 310 SHEET 5 AA2 6 ILE A 329 PRO A 334 -1 O PHE A 331 N MET A 323 SHEET 6 AA2 6 ILE A 295 THR A 297 -1 N THR A 297 O SER A 330 SHEET 1 AA3 2 ARG A 359 TYR A 361 0 SHEET 2 AA3 2 GLU A 455 THR A 457 -1 O GLU A 455 N TYR A 361 SHEET 1 AA4 3 VAL A 364 THR A 368 0 SHEET 2 AA4 3 VAL A 391 VAL A 396 -1 O LEU A 392 N LEU A 367 SHEET 3 AA4 3 VAL A 412 ILE A 413 -1 O ILE A 413 N VAL A 391 SHEET 1 AA5 3 ALA A 415 ILE A 416 0 SHEET 2 AA5 3 LEU A 437 GLN A 440 -1 O GLN A 440 N ALA A 415 SHEET 3 AA5 3 THR A 449 VAL A 452 -1 O LEU A 450 N VAL A 439 SITE 1 AC1 12 ARG A 144 SER A 145 GLN A 146 TYR A 147 SITE 2 AC1 12 ASN A 148 ASP A 152 HIS A 170 PRO A 171 SITE 3 AC1 12 PHE A 172 LEU A 173 ARG A 252 HOH A 621 CRYST1 84.291 84.291 127.978 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011864 0.006850 0.000000 0.00000 SCALE2 0.000000 0.013699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007814 0.00000