HEADER TRANSFERASE 17-APR-16 5JE4 TITLE CRYSTAL STRUCTURE OF BURKHOLDERIA GLUMAE TOXA Y7A MUTANT WITH BOUND S- TITLE 2 ADENOSYLHOMOCYSTEINE (SAH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METHYLTRANSFERASE,PUTATIVE UBIQUINONE/MENAQUINONE COMPND 5 BIOSYNTHESIS METHYLTRANSFERASE,TRP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA GLUMAE; SOURCE 3 ORGANISM_TAXID: 337; SOURCE 4 GENE: TOXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS N-METHYLTRANSFERASE, S-ADENOSYLMETHIONINE (SAM), MUTANT, PRODUCT KEYWDS 2 COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK REVDAT 6 03-APR-24 5JE4 1 REMARK REVDAT 5 06-MAR-24 5JE4 1 REMARK REVDAT 4 04-DEC-19 5JE4 1 REMARK REVDAT 3 20-SEP-17 5JE4 1 HEADER JRNL REMARK REVDAT 2 25-MAY-16 5JE4 1 JRNL REVDAT 1 04-MAY-16 5JE4 0 JRNL AUTH M.K.FENWICK,B.PHILMUS,T.P.BEGLEY,S.E.EALICK JRNL TITL BURKHOLDERIA GLUMAE TOXA IS A DUAL-SPECIFICITY JRNL TITL 2 METHYLTRANSFERASE THAT CATALYZES THE LAST TWO STEPS OF JRNL TITL 3 TOXOFLAVIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 2748 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27070241 JRNL DOI 10.1021/ACS.BIOCHEM.6B00167 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10-2155-000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 32645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1463 - 4.2950 0.88 2811 151 0.1529 0.1773 REMARK 3 2 4.2950 - 3.4098 0.91 2814 117 0.1331 0.2176 REMARK 3 3 3.4098 - 2.9789 0.93 2789 149 0.1658 0.1963 REMARK 3 4 2.9789 - 2.7066 0.95 2829 146 0.1785 0.2367 REMARK 3 5 2.7066 - 2.5127 0.95 2843 152 0.1767 0.2390 REMARK 3 6 2.5127 - 2.3646 0.96 2865 136 0.1819 0.2676 REMARK 3 7 2.3646 - 2.2462 0.96 2808 152 0.1725 0.2338 REMARK 3 8 2.2462 - 2.1484 0.96 2840 133 0.1806 0.2849 REMARK 3 9 2.1484 - 2.0657 0.96 2871 166 0.1871 0.2601 REMARK 3 10 2.0657 - 1.9944 0.97 2840 140 0.2079 0.2780 REMARK 3 11 1.9944 - 1.9321 0.95 2748 145 0.2260 0.2875 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3737 REMARK 3 ANGLE : 0.794 5072 REMARK 3 CHIRALITY : 0.053 523 REMARK 3 PLANARITY : 0.005 665 REMARK 3 DIHEDRAL : 14.766 2176 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5510 29.8053 73.9608 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.3583 REMARK 3 T33: 0.1177 T12: 0.0002 REMARK 3 T13: 0.0015 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 8.1848 L22: 6.2363 REMARK 3 L33: 8.0588 L12: -1.6649 REMARK 3 L13: -2.5198 L23: -4.5024 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: 0.5329 S13: 0.4315 REMARK 3 S21: -0.0985 S22: -0.0369 S23: -0.1993 REMARK 3 S31: -0.3545 S32: -0.2059 S33: -0.0272 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2181 28.1956 83.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.0943 T22: 0.2333 REMARK 3 T33: 0.1419 T12: 0.0236 REMARK 3 T13: 0.0134 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 4.7661 L22: 6.1953 REMARK 3 L33: 5.9743 L12: 1.7908 REMARK 3 L13: 2.0272 L23: 3.2852 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: 0.1988 S13: -0.0786 REMARK 3 S21: -0.1795 S22: -0.0501 S23: 0.2005 REMARK 3 S31: -0.0397 S32: -0.3860 S33: 0.1390 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8403 40.3842 86.1918 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.2658 REMARK 3 T33: 0.3955 T12: 0.0849 REMARK 3 T13: -0.0101 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 5.1628 L22: 4.7029 REMARK 3 L33: 4.8724 L12: 1.9350 REMARK 3 L13: 4.8170 L23: 0.8967 REMARK 3 S TENSOR REMARK 3 S11: -0.3012 S12: 0.2548 S13: 0.8930 REMARK 3 S21: -0.0902 S22: -0.0540 S23: 1.0103 REMARK 3 S31: -0.4694 S32: -0.0439 S33: 0.3488 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4798 28.7309 93.7421 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.2136 REMARK 3 T33: 0.1362 T12: 0.0125 REMARK 3 T13: 0.0712 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.7307 L22: 4.6526 REMARK 3 L33: 2.8202 L12: 0.3262 REMARK 3 L13: -0.1764 L23: 0.2596 REMARK 3 S TENSOR REMARK 3 S11: -0.1238 S12: -0.3586 S13: -0.0986 REMARK 3 S21: 0.3651 S22: 0.1508 S23: 0.3469 REMARK 3 S31: 0.0318 S32: -0.2769 S33: 0.0188 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4511 34.0482 86.9851 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: 0.1827 REMARK 3 T33: 0.1566 T12: 0.0302 REMARK 3 T13: -0.0267 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.1692 L22: 2.2785 REMARK 3 L33: 2.3033 L12: 1.0012 REMARK 3 L13: -0.4883 L23: -0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.0002 S13: 0.3279 REMARK 3 S21: 0.0882 S22: 0.0313 S23: -0.0804 REMARK 3 S31: -0.1992 S32: 0.0672 S33: 0.0390 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6775 24.1928 75.0554 REMARK 3 T TENSOR REMARK 3 T11: 0.1930 T22: 0.2756 REMARK 3 T33: 0.1509 T12: -0.0183 REMARK 3 T13: 0.0245 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.1896 L22: 4.8983 REMARK 3 L33: 3.1543 L12: 0.2888 REMARK 3 L13: -0.4486 L23: -3.9049 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.3834 S13: -0.2168 REMARK 3 S21: -0.5691 S22: 0.1773 S23: 0.0631 REMARK 3 S31: 0.5933 S32: 0.1213 S33: -0.1929 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2405 31.8085 72.4996 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.2559 REMARK 3 T33: 0.1338 T12: -0.0249 REMARK 3 T13: 0.0058 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.4362 L22: 2.5187 REMARK 3 L33: 7.0779 L12: -0.9143 REMARK 3 L13: 0.2327 L23: -1.8549 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: 0.5305 S13: 0.1833 REMARK 3 S21: -0.6854 S22: 0.0883 S23: -0.0885 REMARK 3 S31: 0.0546 S32: 0.3640 S33: -0.0554 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6993 29.7616 55.0010 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.3481 REMARK 3 T33: 0.1536 T12: -0.0491 REMARK 3 T13: 0.0076 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 5.4521 L22: 9.8001 REMARK 3 L33: 2.7508 L12: -1.4433 REMARK 3 L13: -2.6402 L23: 4.1917 REMARK 3 S TENSOR REMARK 3 S11: 0.1587 S12: -0.6070 S13: 0.3783 REMARK 3 S21: 0.1997 S22: -0.1242 S23: -0.0785 REMARK 3 S31: -0.0485 S32: 0.4571 S33: -0.0432 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0800 27.9873 45.9526 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.1031 REMARK 3 T33: 0.1119 T12: 0.0014 REMARK 3 T13: 0.0186 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 3.8844 L22: 5.6842 REMARK 3 L33: 6.5031 L12: -0.2630 REMARK 3 L13: 0.6417 L23: -2.4339 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: -0.3188 S13: -0.0479 REMARK 3 S21: 0.1788 S22: 0.0340 S23: -0.0028 REMARK 3 S31: 0.1688 S32: 0.1533 S33: -0.0788 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5595 33.4254 38.6791 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.1264 REMARK 3 T33: 0.1631 T12: 0.0146 REMARK 3 T13: 0.0605 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 4.4854 L22: 5.3417 REMARK 3 L33: 3.4576 L12: 0.4145 REMARK 3 L13: 0.3332 L23: -0.2199 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: 0.1672 S13: 0.3177 REMARK 3 S21: -0.2000 S22: -0.0239 S23: -0.4773 REMARK 3 S31: -0.1479 S32: 0.2650 S33: 0.0172 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8491 33.9204 41.9297 REMARK 3 T TENSOR REMARK 3 T11: 0.1519 T22: 0.1156 REMARK 3 T33: 0.1144 T12: -0.0188 REMARK 3 T13: -0.0196 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.3360 L22: 2.8748 REMARK 3 L33: 1.6708 L12: -0.6034 REMARK 3 L13: -0.1213 L23: 0.6381 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: -0.0600 S13: 0.1198 REMARK 3 S21: -0.1641 S22: -0.1177 S23: 0.2073 REMARK 3 S31: -0.1435 S32: -0.0934 S33: 0.0768 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4525 24.0654 53.8116 REMARK 3 T TENSOR REMARK 3 T11: 0.2268 T22: 0.2596 REMARK 3 T33: 0.1829 T12: -0.0319 REMARK 3 T13: 0.0358 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 1.0876 L22: 3.4676 REMARK 3 L33: 2.8667 L12: -0.7077 REMARK 3 L13: -0.8393 L23: 3.1274 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.3433 S13: -0.1589 REMARK 3 S21: 0.4610 S22: 0.0762 S23: 0.0818 REMARK 3 S31: 0.6194 S32: 0.0279 S33: 0.0299 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9785 31.8275 56.4204 REMARK 3 T TENSOR REMARK 3 T11: 0.1959 T22: 0.2276 REMARK 3 T33: 0.1540 T12: -0.0533 REMARK 3 T13: 0.0417 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.8084 L22: 2.5463 REMARK 3 L33: 8.3093 L12: -0.6597 REMARK 3 L13: -1.0568 L23: 2.3905 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.2793 S13: -0.0166 REMARK 3 S21: 0.3164 S22: -0.0391 S23: 0.1086 REMARK 3 S31: -0.3431 S32: -0.2823 S33: -0.0159 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS RESIDUAL ACTIVE SITE ELECTRON REMARK 3 DENSITY DUE TO CO-CRYSTALLIZATION WITH TOXOFLAVIN. PRODUCTIVE REMARK 3 AND NONPRODUCTIVE ORIENTATIONS OF TOXOFLAVIN WERE CONSIDERED. REMARK 3 DUE TO THE INDISTINCT ELECTRON DENSITY AND THE POSSIBILITY OF A REMARK 3 BOUND LIGAND MIXTURE OF TOXOFLAVIN AND THE DEGRADATION PRODUCT REMARK 3 1-DEMETHYLTOXOFLAVIN, NO LIGAND WAS PLACED. REMARK 4 REMARK 4 5JE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 38.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: BURKHOLDERIA GLUMAE TOXA Y7A MUTANT WITH BOUND SAH REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 - 23% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 100 MM TRIS, PH 6.1 - 6.8, 6 MM SAH, AND REMARK 280 1 MM TOXOFLAVIN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.25750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.52800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.31100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.52800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.25750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.31100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 ILE A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 PHE A 14 REMARK 465 GLU A 15 REMARK 465 ASP A 16 REMARK 465 PHE A 17 REMARK 465 THR A 18 REMARK 465 GLN A 19 REMARK 465 SER A 20 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 ALA B 7 REMARK 465 ASP B 8 REMARK 465 SER B 9 REMARK 465 ILE B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 LEU B 13 REMARK 465 PHE B 14 REMARK 465 GLU B 15 REMARK 465 ASP B 16 REMARK 465 PHE B 17 REMARK 465 THR B 18 REMARK 465 GLN B 19 REMARK 465 SER B 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 235 54.75 -151.79 REMARK 500 PRO B 88 30.83 -98.72 REMARK 500 ALA B 152 1.79 -64.56 REMARK 500 ASN B 235 52.97 -145.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 609 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B 613 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 614 DISTANCE = 6.10 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JE6 RELATED DB: PDB REMARK 900 RELATED ID: 5JDY RELATED DB: PDB REMARK 900 RELATED ID: 5JDZ RELATED DB: PDB REMARK 900 RELATED ID: 5JE0 RELATED DB: PDB REMARK 900 RELATED ID: 5JE1 RELATED DB: PDB REMARK 900 RELATED ID: 5JE2 RELATED DB: PDB REMARK 900 RELATED ID: 5JE3 RELATED DB: PDB REMARK 900 RELATED ID: 5JE5 RELATED DB: PDB DBREF 5JE4 A 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 DBREF 5JE4 B 1 245 UNP Q9LBJ0 Q9LBJ0_BURGL 1 245 SEQADV 5JE4 GLY A -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE4 HIS A 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE4 ALA A 7 UNP Q9LBJ0 TYR 7 ENGINEERED MUTATION SEQADV 5JE4 GLY B -1 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE4 HIS B 0 UNP Q9LBJ0 EXPRESSION TAG SEQADV 5JE4 ALA B 7 UNP Q9LBJ0 TYR 7 ENGINEERED MUTATION SEQRES 1 A 247 GLY HIS MET SER THR THR ALA ARG ALA ASP SER ILE GLY SEQRES 2 A 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 A 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 A 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 A 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 A 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 A 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 A 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 A 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 A 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 A 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 A 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 A 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 A 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 A 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 A 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 A 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 A 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 A 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO SEQRES 1 B 247 GLY HIS MET SER THR THR ALA ARG ALA ASP SER ILE GLY SEQRES 2 B 247 GLY LEU PHE GLU ASP PHE THR GLN SER ALA ALA GLN ARG SEQRES 3 B 247 ALA ILE GLU VAL ARG THR ILE PHE HIS MET ILE GLY ASP SEQRES 4 B 247 VAL SER GLY LYS SER VAL LEU ASP LEU ALA CYS GLY PHE SEQRES 5 B 247 GLY PHE PHE GLY ARG GLU ILE TYR ARG ARG GLY ALA ALA SEQRES 6 B 247 LYS VAL VAL GLY VAL ASP ILE SER GLU LYS MET ILE GLU SEQRES 7 B 247 LEU ALA ARG GLU GLU SER ARG LYS TYR GLY ASP PRO LEU SEQRES 8 B 247 GLU PHE HIS VAL ARG ASP VAL ALA ASN MET GLU PRO LEU SEQRES 9 B 247 GLY GLN PHE ASP LEU VAL ASN ALA ALA TRP LEU PHE ASN SEQRES 10 B 247 TYR ALA ASP SER VAL GLU ASN LEU ARG LYS MET PHE LYS SEQRES 11 B 247 VAL VAL ARG ALA SER LEU LYS PRO ASP GLY LYS LEU VAL SEQRES 12 B 247 ALA TYR THR VAL ASP PRO ASP PHE SER LEU ALA LYS GLY SEQRES 13 B 247 ASN PHE ALA LYS TYR GLY VAL ASN VAL LEU ASN GLU ARG SEQRES 14 B 247 ALA TRP GLY PRO GLY TYR ARG HIS ASP ALA GLU PHE VAL SEQRES 15 B 247 THR ASP PRO PRO SER GLN PHE SER PHE TYR ARG TRP SER SEQRES 16 B 247 ARG ALA ASP TYR GLU SER ALA ILE ALA ASP ALA GLY PHE SEQRES 17 B 247 SER HIS PHE GLU TRP GLN LYS PRO LEU LEU GLU ALA ASP SEQRES 18 B 247 ASP ILE ALA THR HIS PRO PRO GLY PHE TRP ASP VAL PHE SEQRES 19 B 247 GLN ASN ASN CYS LEU GLN THR GLY LEU VAL CYS LYS PRO HET SAH A 301 26 HET SAH B 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *423(H2 O) HELIX 1 AA1 ALA A 22 GLY A 36 1 15 HELIX 2 AA2 GLY A 51 ARG A 60 1 10 HELIX 3 AA3 SER A 71 GLY A 86 1 16 HELIX 4 AA4 ASP A 95 MET A 99 5 5 HELIX 5 AA5 LEU A 113 ALA A 117 5 5 HELIX 6 AA6 SER A 119 SER A 133 1 15 HELIX 7 AA7 SER A 150 GLY A 154 5 5 HELIX 8 AA8 PHE A 156 TYR A 159 5 4 HELIX 9 AA9 SER A 193 ALA A 204 1 12 HELIX 10 AB1 GLU A 217 THR A 223 1 7 HELIX 11 AB2 TRP A 229 ASN A 235 1 7 HELIX 12 AB3 ALA B 22 GLY B 36 1 15 HELIX 13 AB4 GLY B 51 ARG B 60 1 10 HELIX 14 AB5 SER B 71 GLY B 86 1 16 HELIX 15 AB6 ASP B 95 MET B 99 5 5 HELIX 16 AB7 LEU B 113 ALA B 117 5 5 HELIX 17 AB8 SER B 119 SER B 133 1 15 HELIX 18 AB9 SER B 150 GLY B 154 5 5 HELIX 19 AC1 PHE B 156 TYR B 159 5 4 HELIX 20 AC2 SER B 193 GLY B 205 1 13 HELIX 21 AC3 GLU B 217 THR B 223 1 7 HELIX 22 AC4 TRP B 229 ASN B 235 1 7 SHEET 1 AA1 7 GLU A 90 VAL A 93 0 SHEET 2 AA1 7 LYS A 64 ASP A 69 1 N GLY A 67 O GLU A 90 SHEET 3 AA1 7 SER A 42 LEU A 46 1 N ASP A 45 O VAL A 66 SHEET 4 AA1 7 PHE A 105 ALA A 111 1 O ASN A 109 N LEU A 44 SHEET 5 AA1 7 LEU A 134 VAL A 145 1 O VAL A 141 N VAL A 108 SHEET 6 AA1 7 GLN A 238 LYS A 244 -1 O CYS A 243 N LEU A 140 SHEET 7 AA1 7 HIS A 208 GLN A 212 -1 N GLN A 212 O GLY A 240 SHEET 1 AA2 3 VAL A 161 VAL A 163 0 SHEET 2 AA2 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA2 3 ARG A 167 TRP A 169 -1 N ARG A 167 O ARG A 174 SHEET 1 AA3 3 VAL A 161 VAL A 163 0 SHEET 2 AA3 3 GLY A 172 PHE A 179 -1 O GLU A 178 N ASN A 162 SHEET 3 AA3 3 SER A 185 ARG A 191 -1 O ARG A 191 N TYR A 173 SHEET 1 AA4 7 GLU B 90 VAL B 93 0 SHEET 2 AA4 7 LYS B 64 ASP B 69 1 N GLY B 67 O GLU B 90 SHEET 3 AA4 7 SER B 42 LEU B 46 1 N ASP B 45 O VAL B 66 SHEET 4 AA4 7 PHE B 105 ALA B 111 1 O ASN B 109 N LEU B 44 SHEET 5 AA4 7 LEU B 134 VAL B 145 1 O VAL B 141 N VAL B 108 SHEET 6 AA4 7 GLN B 238 LYS B 244 -1 O CYS B 243 N LEU B 140 SHEET 7 AA4 7 HIS B 208 GLN B 212 -1 N GLN B 212 O GLY B 240 SHEET 1 AA5 3 VAL B 161 VAL B 163 0 SHEET 2 AA5 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA5 3 ARG B 167 TRP B 169 -1 N TRP B 169 O GLY B 172 SHEET 1 AA6 3 VAL B 161 VAL B 163 0 SHEET 2 AA6 3 GLY B 172 PHE B 179 -1 O GLU B 178 N ASN B 162 SHEET 3 AA6 3 SER B 185 ARG B 191 -1 O PHE B 189 N HIS B 175 CISPEP 1 ASP A 182 PRO A 183 0 0.53 CISPEP 2 ASP B 182 PRO B 183 0 -0.31 SITE 1 AC1 18 ARG A 24 ALA A 47 CYS A 48 PHE A 53 SITE 2 AC1 18 ASP A 69 ILE A 70 MET A 74 ARG A 94 SITE 3 AC1 18 ASP A 95 VAL A 96 ALA A 111 TRP A 112 SITE 4 AC1 18 TYR A 116 MET A 126 HOH A 450 HOH A 484 SITE 5 AC1 18 HOH A 489 HOH A 524 SITE 1 AC2 18 ARG B 24 ALA B 47 CYS B 48 PHE B 53 SITE 2 AC2 18 ASP B 69 ILE B 70 ARG B 94 ASP B 95 SITE 3 AC2 18 VAL B 96 ALA B 111 TRP B 112 TYR B 116 SITE 4 AC2 18 MET B 126 HOH B 409 HOH B 429 HOH B 437 SITE 5 AC2 18 HOH B 442 HOH B 516 CRYST1 46.515 66.622 145.056 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006894 0.00000