HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-APR-16 5J87 TITLE DISCOVERY OF N-(3-(5-((3-ACRYLAMIDO-4-(MORPHOLINE-4-CARBONYL)PHENYL) TITLE 2 AMINO)-1-METHYL-6-OXO-1,6-DIHYDROPYRIDIN-3-YL)-2-METHYLPHENYL)-4- TITLE 3 (TERT-BUTYL)BENZAMIDE (CHMFL-BTK-01) AS A HIGHLY SELECTIVE TITLE 4 IRREVERSIBLE BTK KINASE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 385-658; COMPND 5 SYNONYM: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR COMPND 6 KINASE,BPK,BRUTON TYROSINE KINASE; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTK, AGMX1, ATK, BPK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS BTK, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.H.YUN,S.ZHANG REVDAT 2 04-OCT-17 5J87 1 REMARK REVDAT 1 19-APR-17 5J87 0 JRNL AUTH Q.LIANG,Y.CHEN,K.YU,C.CHEN,S.ZHANG,A.WANG,W.WANG,H.WU,X.LIU, JRNL AUTH 2 B.WANG,L.WANG,Z.HU,W.WANG,T.REN,S.ZHANG,Q.LIU,C.H.YUN,J.LIU JRNL TITL DISCOVERY OF JRNL TITL 2 N-(3-(5-((3-ACRYLAMIDO-4-(MORPHOLINE-4-CARBONYL)PHENYL) JRNL TITL 3 AMINO)-1-METHYL-6-OXO-1,6-DIHYDROPYRIDIN-3-YL) JRNL TITL 4 -2-METHYLPHENYL)-4-(TERT-BUTYL)BENZAMIDE (CHMFL-BTK-01) AS A JRNL TITL 5 HIGHLY SELECTIVE IRREVERSIBLE BRUTON'S TYROSINE KINASE (BTK) JRNL TITL 6 INHIBITOR. JRNL REF EUR J MED CHEM V. 131 107 2017 JRNL REFN ISSN 1768-3254 JRNL PMID 28315597 JRNL DOI 10.1016/J.EJMECH.2017.03.001 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 136878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 7168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.5001 - 4.3009 0.94 7271 380 0.2111 0.2480 REMARK 3 2 4.3009 - 3.4152 0.93 7131 360 0.1694 0.2101 REMARK 3 3 3.4152 - 2.9839 0.93 7058 397 0.1931 0.2240 REMARK 3 4 2.9839 - 2.7113 0.91 6918 355 0.2085 0.2453 REMARK 3 5 2.7113 - 2.5171 0.92 6953 384 0.2113 0.2461 REMARK 3 6 2.5171 - 2.3687 0.92 6947 392 0.2188 0.2311 REMARK 3 7 2.3687 - 2.2501 0.89 6774 337 0.2232 0.2580 REMARK 3 8 2.2501 - 2.1522 0.86 6518 348 0.2225 0.2393 REMARK 3 9 2.1522 - 2.0694 0.86 6496 340 0.2327 0.2573 REMARK 3 10 2.0694 - 1.9980 0.85 6434 350 0.2301 0.2784 REMARK 3 11 1.9980 - 1.9355 0.85 6467 328 0.2391 0.2559 REMARK 3 12 1.9355 - 1.8802 0.84 6294 327 0.2462 0.2762 REMARK 3 13 1.8802 - 1.8307 0.84 6328 307 0.2476 0.2708 REMARK 3 14 1.8307 - 1.7861 0.81 6154 324 0.2543 0.2463 REMARK 3 15 1.7861 - 1.7455 0.83 6203 318 0.2625 0.3025 REMARK 3 16 1.7455 - 1.7083 0.81 6191 360 0.2726 0.2817 REMARK 3 17 1.7083 - 1.6741 0.83 6220 319 0.2774 0.2937 REMARK 3 18 1.6741 - 1.6426 0.80 6140 339 0.2792 0.2987 REMARK 3 19 1.6426 - 1.6132 0.81 6032 327 0.2926 0.3298 REMARK 3 20 1.6132 - 1.5859 0.72 5424 290 0.3006 0.2836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 9083 REMARK 3 ANGLE : 1.730 12280 REMARK 3 CHIRALITY : 0.145 1285 REMARK 3 PLANARITY : 0.011 1544 REMARK 3 DIHEDRAL : 19.895 3527 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 136878 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 48.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE ,0.1M SODIUM REMARK 280 CACODYLATE PH6.5, 31% PEG 2000 , 0.1M SODIUM IODIDE, EVAPORATION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.77500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 385 REMARK 465 SER A 386 REMARK 465 THR A 387 REMARK 465 ALA A 388 REMARK 465 GLY A 389 REMARK 465 LEU A 390 REMARK 465 GLY A 391 REMARK 465 TYR A 392 REMARK 465 GLY A 393 REMARK 465 SER A 394 REMARK 465 TRP A 395 REMARK 465 PRO C 385 REMARK 465 SER C 386 REMARK 465 THR C 387 REMARK 465 ALA C 388 REMARK 465 GLY C 389 REMARK 465 LEU C 390 REMARK 465 GLY C 391 REMARK 465 TYR C 392 REMARK 465 GLY C 393 REMARK 465 SER C 394 REMARK 465 TRP C 395 REMARK 465 GLU C 657 REMARK 465 GLU C 658 REMARK 465 PRO D 385 REMARK 465 SER D 386 REMARK 465 THR D 387 REMARK 465 ALA D 388 REMARK 465 GLY D 389 REMARK 465 LEU D 390 REMARK 465 GLY D 391 REMARK 465 TYR D 392 REMARK 465 GLY D 393 REMARK 465 SER D 394 REMARK 465 TRP D 395 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 392 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET B 489 SD CE REMARK 470 LYS B 625 CG CD CE NZ REMARK 470 ARG C 492 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 624 CG CD OE1 OE2 REMARK 470 LYS C 625 CG CD CE NZ REMARK 470 ARG D 492 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 618 NE CZ NH1 NH2 REMARK 470 GLU D 624 CG CD OE1 OE2 REMARK 470 LYS D 625 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N HIS C 620 CB TYR D 617 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 424 -76.15 -101.49 REMARK 500 ARG A 520 -6.34 79.96 REMARK 500 ASP A 521 45.32 -149.32 REMARK 500 ASP A 548 110.46 -162.96 REMARK 500 ARG B 520 -10.60 81.97 REMARK 500 ASP B 521 59.69 -148.50 REMARK 500 LEU B 621 36.48 -91.82 REMARK 500 LEU C 405 -76.89 -109.12 REMARK 500 GLN C 424 -60.95 -142.99 REMARK 500 ARG C 520 -9.80 81.42 REMARK 500 ASP C 521 66.75 -159.35 REMARK 500 ASP C 548 110.69 -162.74 REMARK 500 LEU D 405 -97.58 -107.60 REMARK 500 PHE D 442 -68.06 -97.06 REMARK 500 ARG D 520 -9.08 80.74 REMARK 500 ASP D 521 43.21 -142.83 REMARK 500 LEU D 547 50.34 -106.59 REMARK 500 PRO D 560 50.84 -67.92 REMARK 500 ARG D 615 -140.68 -143.79 REMARK 500 TRP D 634 40.20 -100.11 REMARK 500 GLU D 657 -74.05 -74.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1021 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B1030 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B1031 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B1032 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B1033 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B1034 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B1035 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH C 964 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH C 965 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH D1028 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH D1029 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH D1030 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH D1031 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH D1032 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH D1033 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH D1034 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH D1035 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH D1036 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH D1037 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH D1038 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH D1039 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH D1040 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH D1041 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH D1042 DISTANCE = 8.71 ANGSTROMS REMARK 525 HOH D1043 DISTANCE = 10.50 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N42 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide N42 B 701 and CYS B REMARK 800 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide N42 C 701 and CYS C REMARK 800 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide N42 D 701 and CYS D REMARK 800 481 DBREF 5J87 A 385 658 UNP Q06187 BTK_HUMAN 385 658 DBREF 5J87 B 385 658 UNP Q06187 BTK_HUMAN 385 658 DBREF 5J87 C 385 658 UNP Q06187 BTK_HUMAN 385 658 DBREF 5J87 D 385 658 UNP Q06187 BTK_HUMAN 385 658 SEQRES 1 A 274 PRO SER THR ALA GLY LEU GLY TYR GLY SER TRP GLU ILE SEQRES 2 A 274 ASP PRO LYS ASP LEU THR PHE LEU LYS GLU LEU GLY THR SEQRES 3 A 274 GLY GLN PHE GLY VAL VAL LYS TYR GLY LYS TRP ARG GLY SEQRES 4 A 274 GLN TYR ASP VAL ALA ILE LYS MET ILE LYS GLU GLY SER SEQRES 5 A 274 MET SER GLU ASP GLU PHE ILE GLU GLU ALA LYS VAL MET SEQRES 6 A 274 MET ASN LEU SER HIS GLU LYS LEU VAL GLN LEU TYR GLY SEQRES 7 A 274 VAL CYS THR LYS GLN ARG PRO ILE PHE ILE ILE THR GLU SEQRES 8 A 274 TYR MET ALA ASN GLY CYS LEU LEU ASN TYR LEU ARG GLU SEQRES 9 A 274 MET ARG HIS ARG PHE GLN THR GLN GLN LEU LEU GLU MET SEQRES 10 A 274 CYS LYS ASP VAL CYS GLU ALA MET GLU TYR LEU GLU SER SEQRES 11 A 274 LYS GLN PHE LEU HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 12 A 274 LEU VAL ASN ASP GLN GLY VAL VAL LYS VAL SER ASP PHE SEQRES 13 A 274 GLY LEU SER ARG TYR VAL LEU ASP ASP GLU TYR THR SER SEQRES 14 A 274 SER VAL GLY SER LYS PHE PRO VAL ARG TRP SER PRO PRO SEQRES 15 A 274 GLU VAL LEU MET TYR SER LYS PHE SER SER LYS SER ASP SEQRES 16 A 274 ILE TRP ALA PHE GLY VAL LEU MET TRP GLU ILE TYR SER SEQRES 17 A 274 LEU GLY LYS MET PRO TYR GLU ARG PHE THR ASN SER GLU SEQRES 18 A 274 THR ALA GLU HIS ILE ALA GLN GLY LEU ARG LEU TYR ARG SEQRES 19 A 274 PRO HIS LEU ALA SER GLU LYS VAL TYR THR ILE MET TYR SEQRES 20 A 274 SER CYS TRP HIS GLU LYS ALA ASP GLU ARG PRO THR PHE SEQRES 21 A 274 LYS ILE LEU LEU SER ASN ILE LEU ASP VAL MET ASP GLU SEQRES 22 A 274 GLU SEQRES 1 B 274 PRO SER THR ALA GLY LEU GLY TYR GLY SER TRP GLU ILE SEQRES 2 B 274 ASP PRO LYS ASP LEU THR PHE LEU LYS GLU LEU GLY THR SEQRES 3 B 274 GLY GLN PHE GLY VAL VAL LYS TYR GLY LYS TRP ARG GLY SEQRES 4 B 274 GLN TYR ASP VAL ALA ILE LYS MET ILE LYS GLU GLY SER SEQRES 5 B 274 MET SER GLU ASP GLU PHE ILE GLU GLU ALA LYS VAL MET SEQRES 6 B 274 MET ASN LEU SER HIS GLU LYS LEU VAL GLN LEU TYR GLY SEQRES 7 B 274 VAL CYS THR LYS GLN ARG PRO ILE PHE ILE ILE THR GLU SEQRES 8 B 274 TYR MET ALA ASN GLY CYS LEU LEU ASN TYR LEU ARG GLU SEQRES 9 B 274 MET ARG HIS ARG PHE GLN THR GLN GLN LEU LEU GLU MET SEQRES 10 B 274 CYS LYS ASP VAL CYS GLU ALA MET GLU TYR LEU GLU SER SEQRES 11 B 274 LYS GLN PHE LEU HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 12 B 274 LEU VAL ASN ASP GLN GLY VAL VAL LYS VAL SER ASP PHE SEQRES 13 B 274 GLY LEU SER ARG TYR VAL LEU ASP ASP GLU TYR THR SER SEQRES 14 B 274 SER VAL GLY SER LYS PHE PRO VAL ARG TRP SER PRO PRO SEQRES 15 B 274 GLU VAL LEU MET TYR SER LYS PHE SER SER LYS SER ASP SEQRES 16 B 274 ILE TRP ALA PHE GLY VAL LEU MET TRP GLU ILE TYR SER SEQRES 17 B 274 LEU GLY LYS MET PRO TYR GLU ARG PHE THR ASN SER GLU SEQRES 18 B 274 THR ALA GLU HIS ILE ALA GLN GLY LEU ARG LEU TYR ARG SEQRES 19 B 274 PRO HIS LEU ALA SER GLU LYS VAL TYR THR ILE MET TYR SEQRES 20 B 274 SER CYS TRP HIS GLU LYS ALA ASP GLU ARG PRO THR PHE SEQRES 21 B 274 LYS ILE LEU LEU SER ASN ILE LEU ASP VAL MET ASP GLU SEQRES 22 B 274 GLU SEQRES 1 C 274 PRO SER THR ALA GLY LEU GLY TYR GLY SER TRP GLU ILE SEQRES 2 C 274 ASP PRO LYS ASP LEU THR PHE LEU LYS GLU LEU GLY THR SEQRES 3 C 274 GLY GLN PHE GLY VAL VAL LYS TYR GLY LYS TRP ARG GLY SEQRES 4 C 274 GLN TYR ASP VAL ALA ILE LYS MET ILE LYS GLU GLY SER SEQRES 5 C 274 MET SER GLU ASP GLU PHE ILE GLU GLU ALA LYS VAL MET SEQRES 6 C 274 MET ASN LEU SER HIS GLU LYS LEU VAL GLN LEU TYR GLY SEQRES 7 C 274 VAL CYS THR LYS GLN ARG PRO ILE PHE ILE ILE THR GLU SEQRES 8 C 274 TYR MET ALA ASN GLY CYS LEU LEU ASN TYR LEU ARG GLU SEQRES 9 C 274 MET ARG HIS ARG PHE GLN THR GLN GLN LEU LEU GLU MET SEQRES 10 C 274 CYS LYS ASP VAL CYS GLU ALA MET GLU TYR LEU GLU SER SEQRES 11 C 274 LYS GLN PHE LEU HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 12 C 274 LEU VAL ASN ASP GLN GLY VAL VAL LYS VAL SER ASP PHE SEQRES 13 C 274 GLY LEU SER ARG TYR VAL LEU ASP ASP GLU TYR THR SER SEQRES 14 C 274 SER VAL GLY SER LYS PHE PRO VAL ARG TRP SER PRO PRO SEQRES 15 C 274 GLU VAL LEU MET TYR SER LYS PHE SER SER LYS SER ASP SEQRES 16 C 274 ILE TRP ALA PHE GLY VAL LEU MET TRP GLU ILE TYR SER SEQRES 17 C 274 LEU GLY LYS MET PRO TYR GLU ARG PHE THR ASN SER GLU SEQRES 18 C 274 THR ALA GLU HIS ILE ALA GLN GLY LEU ARG LEU TYR ARG SEQRES 19 C 274 PRO HIS LEU ALA SER GLU LYS VAL TYR THR ILE MET TYR SEQRES 20 C 274 SER CYS TRP HIS GLU LYS ALA ASP GLU ARG PRO THR PHE SEQRES 21 C 274 LYS ILE LEU LEU SER ASN ILE LEU ASP VAL MET ASP GLU SEQRES 22 C 274 GLU SEQRES 1 D 274 PRO SER THR ALA GLY LEU GLY TYR GLY SER TRP GLU ILE SEQRES 2 D 274 ASP PRO LYS ASP LEU THR PHE LEU LYS GLU LEU GLY THR SEQRES 3 D 274 GLY GLN PHE GLY VAL VAL LYS TYR GLY LYS TRP ARG GLY SEQRES 4 D 274 GLN TYR ASP VAL ALA ILE LYS MET ILE LYS GLU GLY SER SEQRES 5 D 274 MET SER GLU ASP GLU PHE ILE GLU GLU ALA LYS VAL MET SEQRES 6 D 274 MET ASN LEU SER HIS GLU LYS LEU VAL GLN LEU TYR GLY SEQRES 7 D 274 VAL CYS THR LYS GLN ARG PRO ILE PHE ILE ILE THR GLU SEQRES 8 D 274 TYR MET ALA ASN GLY CYS LEU LEU ASN TYR LEU ARG GLU SEQRES 9 D 274 MET ARG HIS ARG PHE GLN THR GLN GLN LEU LEU GLU MET SEQRES 10 D 274 CYS LYS ASP VAL CYS GLU ALA MET GLU TYR LEU GLU SER SEQRES 11 D 274 LYS GLN PHE LEU HIS ARG ASP LEU ALA ALA ARG ASN CYS SEQRES 12 D 274 LEU VAL ASN ASP GLN GLY VAL VAL LYS VAL SER ASP PHE SEQRES 13 D 274 GLY LEU SER ARG TYR VAL LEU ASP ASP GLU TYR THR SER SEQRES 14 D 274 SER VAL GLY SER LYS PHE PRO VAL ARG TRP SER PRO PRO SEQRES 15 D 274 GLU VAL LEU MET TYR SER LYS PHE SER SER LYS SER ASP SEQRES 16 D 274 ILE TRP ALA PHE GLY VAL LEU MET TRP GLU ILE TYR SER SEQRES 17 D 274 LEU GLY LYS MET PRO TYR GLU ARG PHE THR ASN SER GLU SEQRES 18 D 274 THR ALA GLU HIS ILE ALA GLN GLY LEU ARG LEU TYR ARG SEQRES 19 D 274 PRO HIS LEU ALA SER GLU LYS VAL TYR THR ILE MET TYR SEQRES 20 D 274 SER CYS TRP HIS GLU LYS ALA ASP GLU ARG PRO THR PHE SEQRES 21 D 274 LYS ILE LEU LEU SER ASN ILE LEU ASP VAL MET ASP GLU SEQRES 22 D 274 GLU HET N42 A 701 48 HET N42 B 701 48 HET N42 C 701 48 HET N42 D 701 48 HETNAM N42 N-[3-(5-{[3-(ACRYLOYLAMINO)-4-(MORPHOLINE-4-CARBONYL) HETNAM 2 N42 PHENYL]AMINO}-1-METHYL-6-OXO-1,6-DIHYDROPYRIDIN-3-YL)- HETNAM 3 N42 2-METHYLPHENYL]-4-TERT-BUTYLBENZAMIDE FORMUL 5 N42 4(C38 H41 N5 O5) FORMUL 9 HOH *864(H2 O) HELIX 1 AA1 ASP A 398 LEU A 402 5 5 HELIX 2 AA2 SER A 438 ASN A 451 1 14 HELIX 3 AA3 CYS A 481 ARG A 487 1 7 HELIX 4 AA4 GLN A 494 LYS A 515 1 22 HELIX 5 AA5 ALA A 523 ARG A 525 5 3 HELIX 6 AA6 GLY A 541 VAL A 546 5 6 HELIX 7 AA7 ASP A 548 SER A 553 1 6 HELIX 8 AA8 PRO A 560 SER A 564 5 5 HELIX 9 AA9 PRO A 565 SER A 572 1 8 HELIX 10 AB1 SER A 575 SER A 592 1 18 HELIX 11 AB2 THR A 602 GLN A 612 1 11 HELIX 12 AB3 SER A 623 CYS A 633 1 11 HELIX 13 AB4 LYS A 637 ARG A 641 5 5 HELIX 14 AB5 THR A 643 GLU A 658 1 16 HELIX 15 AB6 TYR B 392 GLU B 396 5 5 HELIX 16 AB7 ASP B 398 LYS B 400 5 3 HELIX 17 AB8 SER B 438 ALA B 446 1 9 HELIX 18 AB9 ALA B 446 ASN B 451 1 6 HELIX 19 AC1 CYS B 481 GLU B 488 1 8 HELIX 20 AC2 GLN B 494 LYS B 515 1 22 HELIX 21 AC3 ALA B 523 ARG B 525 5 3 HELIX 22 AC4 LEU B 542 VAL B 546 5 5 HELIX 23 AC5 ASP B 548 SER B 553 1 6 HELIX 24 AC6 PRO B 560 SER B 564 5 5 HELIX 25 AC7 PRO B 565 SER B 572 1 8 HELIX 26 AC8 SER B 575 SER B 592 1 18 HELIX 27 AC9 THR B 602 GLN B 612 1 11 HELIX 28 AD1 SER B 623 SER B 632 1 10 HELIX 29 AD2 CYS B 633 HIS B 635 5 3 HELIX 30 AD3 LYS B 637 ARG B 641 5 5 HELIX 31 AD4 THR B 643 GLU B 658 1 16 HELIX 32 AD5 SER C 438 ASN C 451 1 14 HELIX 33 AD6 CYS C 481 GLU C 488 1 8 HELIX 34 AD7 GLN C 494 LYS C 515 1 22 HELIX 35 AD8 ALA C 523 ARG C 525 5 3 HELIX 36 AD9 LEU C 542 VAL C 546 5 5 HELIX 37 AE1 ASP C 548 SER C 553 1 6 HELIX 38 AE2 PRO C 560 SER C 564 5 5 HELIX 39 AE3 PRO C 565 SER C 572 1 8 HELIX 40 AE4 SER C 575 SER C 592 1 18 HELIX 41 AE5 THR C 602 ILE C 610 1 9 HELIX 42 AE6 SER C 623 CYS C 633 1 11 HELIX 43 AE7 LYS C 637 ARG C 641 5 5 HELIX 44 AE8 THR C 643 ASP C 656 1 14 HELIX 45 AE9 ASP D 398 LYS D 400 5 3 HELIX 46 AF1 GLU D 439 ASN D 451 1 13 HELIX 47 AF2 CYS D 481 GLU D 488 1 8 HELIX 48 AF3 GLN D 494 LYS D 515 1 22 HELIX 49 AF4 ALA D 523 ARG D 525 5 3 HELIX 50 AF5 GLY D 541 VAL D 546 5 6 HELIX 51 AF6 ASP D 548 SER D 553 1 6 HELIX 52 AF7 PRO D 560 SER D 564 5 5 HELIX 53 AF8 PRO D 565 SER D 572 1 8 HELIX 54 AF9 SER D 575 SER D 592 1 18 HELIX 55 AG1 THR D 602 ILE D 610 1 9 HELIX 56 AG2 ALA D 611 GLY D 613 5 3 HELIX 57 AG3 SER D 623 CYS D 633 1 11 HELIX 58 AG4 LYS D 637 ARG D 641 5 5 HELIX 59 AG5 THR D 643 GLU D 658 1 16 SHEET 1 AA1 5 LYS A 406 GLY A 411 0 SHEET 2 AA1 5 GLY A 414 TRP A 421 -1 O TYR A 418 N LYS A 406 SHEET 3 AA1 5 TYR A 425 MET A 431 -1 O ILE A 429 N LYS A 417 SHEET 4 AA1 5 PHE A 471 GLU A 475 -1 O ILE A 472 N LYS A 430 SHEET 5 AA1 5 LEU A 460 CYS A 464 -1 N CYS A 464 O PHE A 471 SHEET 1 AA2 2 CYS A 527 VAL A 529 0 SHEET 2 AA2 2 VAL A 535 VAL A 537 -1 O LYS A 536 N LEU A 528 SHEET 1 AA3 5 LEU B 402 GLY B 411 0 SHEET 2 AA3 5 GLY B 414 TRP B 421 -1 O TYR B 418 N LYS B 406 SHEET 3 AA3 5 TYR B 425 MET B 431 -1 O ILE B 429 N LYS B 417 SHEET 4 AA3 5 PHE B 471 GLU B 475 -1 O ILE B 472 N LYS B 430 SHEET 5 AA3 5 LEU B 460 CYS B 464 -1 N GLY B 462 O ILE B 473 SHEET 1 AA4 2 CYS B 527 VAL B 529 0 SHEET 2 AA4 2 VAL B 535 VAL B 537 -1 O LYS B 536 N LEU B 528 SHEET 1 AA5 5 LYS C 406 GLY C 411 0 SHEET 2 AA5 5 GLY C 414 TRP C 421 -1 O GLY C 414 N GLY C 411 SHEET 3 AA5 5 TYR C 425 MET C 431 -1 O ILE C 429 N LYS C 417 SHEET 4 AA5 5 PHE C 471 GLU C 475 -1 O THR C 474 N ALA C 428 SHEET 5 AA5 5 LEU C 460 CYS C 464 -1 N GLY C 462 O ILE C 473 SHEET 1 AA6 2 CYS C 527 VAL C 529 0 SHEET 2 AA6 2 VAL C 535 VAL C 537 -1 O LYS C 536 N LEU C 528 SHEET 1 AA7 5 LEU D 402 GLY D 411 0 SHEET 2 AA7 5 GLY D 414 TRP D 421 -1 O GLY D 414 N GLY D 411 SHEET 3 AA7 5 TYR D 425 MET D 431 -1 O TYR D 425 N TRP D 421 SHEET 4 AA7 5 PHE D 471 GLU D 475 -1 O THR D 474 N ALA D 428 SHEET 5 AA7 5 LEU D 460 CYS D 464 -1 N TYR D 461 O ILE D 473 SHEET 1 AA8 2 CYS D 527 VAL D 529 0 SHEET 2 AA8 2 VAL D 535 VAL D 537 -1 O LYS D 536 N LEU D 528 LINK SG CYS A 481 CBA N42 A 701 1555 1555 1.82 LINK SG CYS B 481 CBA N42 B 701 1555 1555 1.83 LINK SG CYS C 481 CBA N42 C 701 1555 1555 1.85 LINK SG CYS D 481 CBA N42 D 701 1555 1555 1.83 CISPEP 1 ARG A 468 PRO A 469 0 8.79 CISPEP 2 ARG B 468 PRO B 469 0 -0.65 CISPEP 3 ARG C 468 PRO C 469 0 9.41 CISPEP 4 ARG D 468 PRO D 469 0 -7.33 SITE 1 AC1 17 LEU A 408 PHE A 413 VAL A 416 ALA A 428 SITE 2 AC1 17 LYS A 430 THR A 474 GLU A 475 TYR A 476 SITE 3 AC1 17 MET A 477 ALA A 478 GLY A 480 CYS A 481 SITE 4 AC1 17 ASN A 526 LEU A 528 ASP A 539 HOH A 828 SITE 5 AC1 17 HOH A 890 SITE 1 AC2 24 LEU B 408 GLY B 411 VAL B 416 ALA B 428 SITE 2 AC2 24 LYS B 430 THR B 474 GLU B 475 TYR B 476 SITE 3 AC2 24 MET B 477 ALA B 478 ASN B 479 GLY B 480 SITE 4 AC2 24 LEU B 482 LEU B 483 ASN B 484 TYR B 485 SITE 5 AC2 24 ASN B 526 LEU B 528 ASP B 539 TYR B 551 SITE 6 AC2 24 HOH B 819 HOH B 855 HOH B 910 HOH B 926 SITE 1 AC3 22 LEU C 408 GLY C 411 VAL C 416 ALA C 428 SITE 2 AC3 22 LYS C 430 THR C 474 GLU C 475 TYR C 476 SITE 3 AC3 22 MET C 477 ASN C 479 GLY C 480 LEU C 482 SITE 4 AC3 22 LEU C 483 ASN C 484 TYR C 485 ASN C 526 SITE 5 AC3 22 LEU C 528 ASP C 539 HOH C 803 HOH C 807 SITE 6 AC3 22 HOH C 821 HOH C 827 SITE 1 AC4 27 LEU D 408 THR D 410 GLN D 412 VAL D 416 SITE 2 AC4 27 ALA D 428 LYS D 430 THR D 474 GLU D 475 SITE 3 AC4 27 TYR D 476 MET D 477 ALA D 478 GLY D 480 SITE 4 AC4 27 LEU D 482 LEU D 483 ASN D 484 TYR D 485 SITE 5 AC4 27 ASP D 521 ASN D 526 LEU D 528 ASP D 539 SITE 6 AC4 27 LEU D 542 HOH D 815 HOH D 854 HOH D 882 SITE 7 AC4 27 HOH D 884 HOH D 902 HOH D 933 CRYST1 41.761 93.550 145.889 90.00 89.94 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023946 0.000000 -0.000025 0.00000 SCALE2 0.000000 0.010689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006855 0.00000