HEADER TRANSCRIPTION 13-FEB-16 5I4Z TITLE STRUCTURE OF APO OMOMYC COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYC PROTO-ONCOGENE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: OMOMYC, UNP RESIDUES 348-439; COMPND 5 SYNONYM: OMOMYC,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 39,BHLHE39, COMPND 6 PROTO-ONCOGENE C-MYC,TRANSCRIPTION FACTOR P64; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYC, BHLHE39; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEUCINE ZIPPER, TRANSCRIPTION FACTOR, TUMOR SUPPRESSOR, E-BOX, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.KOELMEL,L.A.JUNG,J.KUPER,M.EILERS,C.KISKER REVDAT 3 10-JAN-24 5I4Z 1 LINK REVDAT 2 19-APR-17 5I4Z 1 JRNL REVDAT 1 26-OCT-16 5I4Z 0 JRNL AUTH L.A.JUNG,A.GEBHARDT,W.KOELMEL,C.P.ADE,S.WALZ,J.KUPER, JRNL AUTH 2 B.VON EYSS,S.LETSCHERT,C.REDEL,L.D'ARTISTA,A.BIANKIN, JRNL AUTH 3 L.ZENDER,M.SAUER,E.WOLF,G.EVAN,C.KISKER,M.EILERS JRNL TITL OMOMYC BLUNTS PROMOTER INVASION BY ONCOGENIC MYC TO INHIBIT JRNL TITL 2 GENE EXPRESSION CHARACTERISTIC OF MYC-DEPENDENT TUMORS. JRNL REF ONCOGENE V. 36 1911 2017 JRNL REFN ESSN 1476-5594 JRNL PMID 27748763 JRNL DOI 10.1038/ONC.2016.354 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 24506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3638 - 4.0555 0.99 2803 152 0.1701 0.1900 REMARK 3 2 4.0555 - 3.2192 1.00 2661 133 0.1593 0.1790 REMARK 3 3 3.2192 - 2.8123 1.00 2620 128 0.1778 0.1986 REMARK 3 4 2.8123 - 2.5552 1.00 2556 153 0.1730 0.2123 REMARK 3 5 2.5552 - 2.3720 1.00 2564 144 0.1703 0.1760 REMARK 3 6 2.3720 - 2.2322 1.00 2555 154 0.1722 0.1819 REMARK 3 7 2.2322 - 2.1204 1.00 2538 121 0.1752 0.2059 REMARK 3 8 2.1204 - 2.0281 1.00 2561 142 0.2087 0.2374 REMARK 3 9 2.0281 - 1.9500 0.94 2414 107 0.2506 0.2778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1285 REMARK 3 ANGLE : 1.135 1723 REMARK 3 CHIRALITY : 0.053 198 REMARK 3 PLANARITY : 0.005 223 REMARK 3 DIHEDRAL : 14.944 538 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8601 41.4862 5.1324 REMARK 3 T TENSOR REMARK 3 T11: 0.3672 T22: 0.2753 REMARK 3 T33: 0.2834 T12: -0.0465 REMARK 3 T13: -0.0035 T23: 0.0808 REMARK 3 L TENSOR REMARK 3 L11: 4.7501 L22: 6.1870 REMARK 3 L33: 4.9318 L12: 0.8038 REMARK 3 L13: -0.7284 L23: -0.1917 REMARK 3 S TENSOR REMARK 3 S11: 0.0945 S12: 0.6546 S13: 0.6812 REMARK 3 S21: -0.2402 S22: -0.1486 S23: -0.3108 REMARK 3 S31: -0.8419 S32: 0.0832 S33: -0.2367 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3774 22.1030 14.9527 REMARK 3 T TENSOR REMARK 3 T11: 0.3107 T22: 0.3851 REMARK 3 T33: 0.4020 T12: -0.0485 REMARK 3 T13: 0.0449 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 6.2054 L22: 2.6477 REMARK 3 L33: -0.1754 L12: 4.1772 REMARK 3 L13: -0.4809 L23: -0.3088 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: 0.0502 S13: -0.3852 REMARK 3 S21: 0.2003 S22: 0.0173 S23: 0.0160 REMARK 3 S31: -0.0315 S32: -0.0747 S33: -0.0964 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4319 26.4888 11.8503 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.2632 REMARK 3 T33: 0.3513 T12: -0.0127 REMARK 3 T13: 0.0126 T23: 0.0687 REMARK 3 L TENSOR REMARK 3 L11: 5.7979 L22: 4.5058 REMARK 3 L33: 6.1898 L12: -0.4289 REMARK 3 L13: -1.8175 L23: 1.0901 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: 0.0607 S13: -0.2848 REMARK 3 S21: 0.1807 S22: -0.1652 S23: -0.5934 REMARK 3 S31: 0.2032 S32: 0.4591 S33: 0.1819 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6895 25.5068 8.4054 REMARK 3 T TENSOR REMARK 3 T11: 0.2482 T22: 0.3945 REMARK 3 T33: 0.3620 T12: -0.0191 REMARK 3 T13: 0.0605 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 3.1060 L22: 0.4725 REMARK 3 L33: 0.5737 L12: 1.3866 REMARK 3 L13: -1.6539 L23: -0.8050 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.6650 S13: 0.0298 REMARK 3 S21: 0.0330 S22: 0.1670 S23: 0.1771 REMARK 3 S31: 0.0409 S32: -0.2149 S33: -0.0861 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000217701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.064 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24551 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.81800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NKP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, POTASSIUM SODIUM TARTRATE, PH REMARK 280 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.75000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.37500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.12500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.75000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.12500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.37500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 244 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 LYS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 MET A -16 REMARK 465 SER A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 VAL A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 THR A 11 REMARK 465 HIS A 12 REMARK 465 ASN A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 ARG A 17 REMARK 465 GLN A 18 REMARK 465 MET B -25 REMARK 465 LYS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 PRO B -17 REMARK 465 MET B -16 REMARK 465 SER B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 5 REMARK 465 ASN B 6 REMARK 465 VAL B 7 REMARK 465 LYS B 8 REMARK 465 ARG B 9 REMARK 465 ARG B 10 REMARK 465 THR B 11 REMARK 465 HIS B 12 REMARK 465 ASN B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 GLU B 16 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO1 GOL A 102 O HOH A 206 1.55 REMARK 500 O HOH A 255 O HOH B 216 1.81 REMARK 500 O HOH A 246 O HOH A 257 1.97 REMARK 500 OE1 GLU A 62 O HOH A 201 2.07 REMARK 500 OE1 GLN B 86 O HOH B 201 2.09 REMARK 500 NH2 ARG A 74 OE1 GLU B 69 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 242 O HOH A 251 8555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 225 O REMARK 620 2 ASN B 39 O 119.5 REMARK 620 3 GLU B 41 OE1 119.8 1.3 REMARK 620 4 SER B 90 O 73.5 86.2 87.5 REMARK 620 5 HOH B 237 O 96.3 50.2 49.2 123.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 32 OD2 REMARK 620 2 ASN B 39 OD1 94.5 REMARK 620 3 ASN B 89 O 58.5 83.4 REMARK 620 4 HOH B 227 O 170.0 77.5 125.4 REMARK 620 5 HOH B 239 O 73.5 78.9 15.2 110.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 104 DBREF 5I4Z A 1 92 UNP P01106 MYC_HUMAN 348 439 DBREF 5I4Z B 1 92 UNP P01106 MYC_HUMAN 348 439 SEQADV 5I4Z MET A -25 UNP P01106 INITIATING METHIONINE SEQADV 5I4Z LYS A -24 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS A -23 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS A -22 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS A -21 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS A -20 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS A -19 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS A -18 UNP P01106 EXPRESSION TAG SEQADV 5I4Z PRO A -17 UNP P01106 EXPRESSION TAG SEQADV 5I4Z MET A -16 UNP P01106 EXPRESSION TAG SEQADV 5I4Z SER A -15 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ASP A -14 UNP P01106 EXPRESSION TAG SEQADV 5I4Z TYR A -13 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ASP A -12 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ILE A -11 UNP P01106 EXPRESSION TAG SEQADV 5I4Z PRO A -10 UNP P01106 EXPRESSION TAG SEQADV 5I4Z THR A -9 UNP P01106 EXPRESSION TAG SEQADV 5I4Z THR A -8 UNP P01106 EXPRESSION TAG SEQADV 5I4Z GLU A -7 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ASN A -6 UNP P01106 EXPRESSION TAG SEQADV 5I4Z LEU A -5 UNP P01106 EXPRESSION TAG SEQADV 5I4Z TYR A -4 UNP P01106 EXPRESSION TAG SEQADV 5I4Z PHE A -3 UNP P01106 EXPRESSION TAG SEQADV 5I4Z GLN A -2 UNP P01106 EXPRESSION TAG SEQADV 5I4Z GLY A -1 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ALA A 0 UNP P01106 EXPRESSION TAG SEQADV 5I4Z MET A 1 UNP P01106 SER 348 CONFLICT SEQADV 5I4Z ALA A 2 UNP P01106 ASP 349 CONFLICT SEQADV 5I4Z THR A 63 UNP P01106 GLU 410 ENGINEERED MUTATION SEQADV 5I4Z ILE A 70 UNP P01106 GLU 417 ENGINEERED MUTATION SEQADV 5I4Z GLN A 76 UNP P01106 ARG 423 ENGINEERED MUTATION SEQADV 5I4Z ASN A 77 UNP P01106 ARG 424 ENGINEERED MUTATION SEQADV 5I4Z MET B -25 UNP P01106 INITIATING METHIONINE SEQADV 5I4Z LYS B -24 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS B -23 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS B -22 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS B -21 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS B -20 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS B -19 UNP P01106 EXPRESSION TAG SEQADV 5I4Z HIS B -18 UNP P01106 EXPRESSION TAG SEQADV 5I4Z PRO B -17 UNP P01106 EXPRESSION TAG SEQADV 5I4Z MET B -16 UNP P01106 EXPRESSION TAG SEQADV 5I4Z SER B -15 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ASP B -14 UNP P01106 EXPRESSION TAG SEQADV 5I4Z TYR B -13 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ASP B -12 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ILE B -11 UNP P01106 EXPRESSION TAG SEQADV 5I4Z PRO B -10 UNP P01106 EXPRESSION TAG SEQADV 5I4Z THR B -9 UNP P01106 EXPRESSION TAG SEQADV 5I4Z THR B -8 UNP P01106 EXPRESSION TAG SEQADV 5I4Z GLU B -7 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ASN B -6 UNP P01106 EXPRESSION TAG SEQADV 5I4Z LEU B -5 UNP P01106 EXPRESSION TAG SEQADV 5I4Z TYR B -4 UNP P01106 EXPRESSION TAG SEQADV 5I4Z PHE B -3 UNP P01106 EXPRESSION TAG SEQADV 5I4Z GLN B -2 UNP P01106 EXPRESSION TAG SEQADV 5I4Z GLY B -1 UNP P01106 EXPRESSION TAG SEQADV 5I4Z ALA B 0 UNP P01106 EXPRESSION TAG SEQADV 5I4Z MET B 1 UNP P01106 SER 348 CONFLICT SEQADV 5I4Z ALA B 2 UNP P01106 ASP 349 CONFLICT SEQADV 5I4Z THR B 63 UNP P01106 GLU 410 ENGINEERED MUTATION SEQADV 5I4Z ILE B 70 UNP P01106 GLU 417 ENGINEERED MUTATION SEQADV 5I4Z GLN B 76 UNP P01106 ARG 423 ENGINEERED MUTATION SEQADV 5I4Z ASN B 77 UNP P01106 ARG 424 ENGINEERED MUTATION SEQRES 1 A 118 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 118 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 A 118 MET ALA THR GLU GLU ASN VAL LYS ARG ARG THR HIS ASN SEQRES 4 A 118 VAL LEU GLU ARG GLN ARG ARG ASN GLU LEU LYS ARG SER SEQRES 5 A 118 PHE PHE ALA LEU ARG ASP GLN ILE PRO GLU LEU GLU ASN SEQRES 6 A 118 ASN GLU LYS ALA PRO LYS VAL VAL ILE LEU LYS LYS ALA SEQRES 7 A 118 THR ALA TYR ILE LEU SER VAL GLN ALA GLU THR GLN LYS SEQRES 8 A 118 LEU ILE SER GLU ILE ASP LEU LEU ARG LYS GLN ASN GLU SEQRES 9 A 118 GLN LEU LYS HIS LYS LEU GLU GLN LEU ARG ASN SER CYS SEQRES 10 A 118 ALA SEQRES 1 B 118 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 B 118 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 B 118 MET ALA THR GLU GLU ASN VAL LYS ARG ARG THR HIS ASN SEQRES 4 B 118 VAL LEU GLU ARG GLN ARG ARG ASN GLU LEU LYS ARG SER SEQRES 5 B 118 PHE PHE ALA LEU ARG ASP GLN ILE PRO GLU LEU GLU ASN SEQRES 6 B 118 ASN GLU LYS ALA PRO LYS VAL VAL ILE LEU LYS LYS ALA SEQRES 7 B 118 THR ALA TYR ILE LEU SER VAL GLN ALA GLU THR GLN LYS SEQRES 8 B 118 LEU ILE SER GLU ILE ASP LEU LEU ARG LYS GLN ASN GLU SEQRES 9 B 118 GLN LEU LYS HIS LYS LEU GLU GLN LEU ARG ASN SER CYS SEQRES 10 B 118 ALA HET GOL A 101 14 HET GOL A 102 14 HET CL A 103 1 HET CL A 104 1 HET GOL B 101 14 HET CL B 102 1 HET K B 103 1 HET K B 104 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 CL 3(CL 1-) FORMUL 9 K 2(K 1+) FORMUL 11 HOH *114(H2 O) HELIX 1 AA1 ARG A 19 ASP A 32 1 14 HELIX 2 AA2 PRO A 44 CYS A 91 1 48 HELIX 3 AA3 ARG B 20 ASP B 32 1 13 HELIX 4 AA4 PRO B 44 ASN B 89 1 46 SSBOND 1 CYS A 91 CYS B 91 1555 1555 2.04 LINK O HOH A 225 K K B 104 1555 1555 2.67 LINK OD2 ASP B 32 K K B 103 1555 1555 2.77 LINK OD1 ASN B 39 K K B 103 1555 1555 2.80 LINK O ASN B 39 K K B 104 1555 1655 2.59 LINK OE1 GLU B 41 K K B 104 1555 1655 2.82 LINK O ASN B 89 K K B 103 1555 1455 2.77 LINK O SER B 90 K K B 104 1555 1555 2.57 LINK K K B 103 O HOH B 227 1555 1655 3.05 LINK K K B 103 O HOH B 239 1555 1555 2.95 LINK K K B 104 O HOH B 237 1555 1455 2.97 SITE 1 AC1 4 LYS A 24 PHE A 28 ALA A 43 LYS A 45 SITE 1 AC2 4 GLU A 36 ALA A 54 SER A 58 HOH A 206 SITE 1 AC3 2 LYS A 45 CL A 104 SITE 1 AC4 4 LYS A 45 VAL A 46 GLN A 64 CL A 103 SITE 1 AC5 4 ALA B 54 TYR B 55 SER B 58 HOH B 218 SITE 1 AC6 2 PRO B 44 LYS B 45 SITE 1 AC7 5 ASP B 32 ASN B 39 ASN B 89 HOH B 227 SITE 2 AC7 5 HOH B 239 SITE 1 AC8 5 HOH A 225 ASN B 39 GLU B 41 SER B 90 SITE 2 AC8 5 HOH B 237 CRYST1 65.700 65.700 149.500 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015221 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006689 0.00000