HEADER RNA BINDING PROTEIN/RNA 17-SEP-16 5GXH TITLE THE STRUCTURE OF THE GEMIN5 WD40 DOMAIN WITH AAUUUUUG COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEM-ASSOCIATED PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-739; COMPND 5 SYNONYM: GEMIN5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(*A*AP*UP*UP*UP*UP*UP*G)-3'); COMPND 10 CHAIN: B; COMPND 11 SYNONYM: U4 (118-125); COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GEMIN5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS SNRNP ASSEMBLY, SNRNA, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.XU,H.HE,Y.LI,A.DONG,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 29-NOV-23 5GXH 1 REMARK REVDAT 4 14-DEC-22 5GXH 1 SEQADV REVDAT 3 17-OCT-18 5GXH 1 SOURCE REVDAT 2 04-JAN-17 5GXH 1 JRNL REVDAT 1 26-OCT-16 5GXH 0 JRNL AUTH C.XU,H.ISHIKAWA,K.IZUMIKAWA,L.LI,H.HE,Y.NOBE,Y.YAMAUCHI, JRNL AUTH 2 H.M.SHAHJEE,X.-H.WU,Y.-T.YU,T.ISOBE,N.TAKAHASHI,J.MIN JRNL TITL STRUCTURAL INSIGHTS INTO GEMIN5-GUIDED SELECTION OF JRNL TITL 2 PRE-SNRNAS FOR SNRNP ASSEMBLY JRNL REF GENES DEV. V. 30 2376 2016 JRNL REFN ISSN 1549-5477 JRNL PMID 27881600 JRNL DOI 10.1101/GAD.288340.116 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 67561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3587 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4991 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5144 REMARK 3 NUCLEIC ACID ATOMS : 127 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5539 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4974 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7615 ; 1.860 ; 1.914 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11485 ; 1.071 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 697 ; 6.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;31.313 ;23.674 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 812 ;12.627 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.108 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 857 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6173 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1280 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2713 ; 2.587 ; 2.329 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2712 ; 2.578 ; 2.329 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3390 ; 3.650 ; 3.468 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3391 ; 3.650 ; 3.469 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2826 ; 3.225 ; 2.660 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2826 ; 3.221 ; 2.660 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4211 ; 4.725 ; 3.880 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6202 ; 6.553 ;20.111 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6202 ; 6.552 ;20.112 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5GXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1300001645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791829 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71182 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OW8,2HES,3DM0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 0.2 M AMMONIUM REMARK 280 ACETATE, 15% PEG 4000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.22950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 210 REMARK 465 CYS A 211 REMARK 465 LEU A 212 REMARK 465 SER A 213 REMARK 465 ILE A 214 REMARK 465 ASN A 215 REMARK 465 GLN A 216 REMARK 465 GLU A 217 REMARK 465 GLU A 218 REMARK 465 THR A 219 REMARK 465 SER A 220 REMARK 465 GLU A 221 REMARK 465 GLU A 222 REMARK 465 ALA A 223 REMARK 465 GLU A 224 REMARK 465 ILE A 225 REMARK 465 THR A 226 REMARK 465 ASN A 227 REMARK 465 GLY A 228 REMARK 465 ASN A 229 REMARK 465 ALA A 230 REMARK 465 VAL A 231 REMARK 465 ALA A 232 REMARK 465 GLN A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 VAL A 236 REMARK 465 THR A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 274 REMARK 465 GLY A 275 REMARK 465 GLY A 276 REMARK 465 ILE A 277 REMARK 465 ASP A 278 REMARK 465 PRO A 279 REMARK 465 THR A 280 REMARK 465 VAL A 281 REMARK 465 LYS A 282 REMARK 465 SER A 316 REMARK 465 TRP A 317 REMARK 465 LEU A 487 REMARK 465 GLY A 488 REMARK 465 GLY A 489 REMARK 465 GLU A 490 REMARK 465 GLY A 491 REMARK 465 ASP A 492 REMARK 465 ARG A 493 REMARK 465 PRO A 494 REMARK 465 GLY A 723 REMARK 465 LYS A 724 REMARK 465 LYS A 725 REMARK 465 SER A 726 REMARK 465 ILE A 727 REMARK 465 GLU A 728 REMARK 465 LEU A 729 REMARK 465 GLU A 730 REMARK 465 LYS A 731 REMARK 465 LYS A 732 REMARK 465 ARG A 733 REMARK 465 LEU A 734 REMARK 465 SER A 735 REMARK 465 GLN A 736 REMARK 465 PRO A 737 REMARK 465 LYS A 738 REMARK 465 ALA A 739 REMARK 465 A B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 99 CE NZ REMARK 470 ARG A 120 CZ NH1 NH2 REMARK 470 ASP A 143 OD1 OD2 REMARK 470 ARG A 152 CD NE CZ NH1 NH2 REMARK 470 LYS A 184 CD CE NZ REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 ARG A 272 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 315 CG CD OE1 NE2 REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 470 SER A 327 OG REMARK 470 SER A 328 OG REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLU A 346 CD OE1 OE2 REMARK 470 LYS A 349 CD CE NZ REMARK 470 GLU A 370 OE1 OE2 REMARK 470 LYS A 413 CD CE NZ REMARK 470 LYS A 419 CD CE NZ REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 LYS A 428 NZ REMARK 470 LYS A 438 CE NZ REMARK 470 LYS A 460 CE NZ REMARK 470 LYS A 470 CD CE NZ REMARK 470 SER A 486 OG REMARK 470 LYS A 514 CG CD CE NZ REMARK 470 GLU A 518 CG CD OE1 OE2 REMARK 470 LYS A 524 CD CE NZ REMARK 470 LYS A 569 CE NZ REMARK 470 GLN A 575 CD OE1 NE2 REMARK 470 GLN A 593 CG CD OE1 NE2 REMARK 470 GLU A 595 CG CD OE1 OE2 REMARK 470 LYS A 615 CE NZ REMARK 470 GLU A 623 CG CD OE1 OE2 REMARK 470 GLU A 630 CG CD OE1 OE2 REMARK 470 ARG A 671 NE CZ NH1 NH2 REMARK 470 ASP A 716 OD1 OD2 REMARK 470 ARG A 719 NE CZ NH1 NH2 REMARK 470 GLN A 722 CG CD OE1 NE2 REMARK 470 A B 2 P OP1 OP2 REMARK 470 U B 6 C5' C4' O4' C3' C2' O2' C1' REMARK 470 U B 6 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 6 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 557 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 652 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 33 -114.28 52.93 REMARK 500 ARG A 66 129.31 -37.60 REMARK 500 ILE A 149 -68.05 -108.12 REMARK 500 GLN A 249 19.71 80.26 REMARK 500 SER A 327 -72.47 -75.41 REMARK 500 VAL A 425 -72.59 -97.80 REMARK 500 CYS A 433 119.46 -160.40 REMARK 500 GLN A 576 -53.05 -137.82 REMARK 500 SER A 621 68.78 19.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GXI RELATED DB: PDB REMARK 900 RELATED ID: GEMIN5 RELATED DB: TARGETTRACK DBREF 5GXH A 1 739 UNP Q8TEQ6 GEMI5_HUMAN 1 739 DBREF 5GXH B 1 8 PDB 5GXH 5GXH 1 8 SEQADV 5GXH MET A -17 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH HIS A -16 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH HIS A -15 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH HIS A -14 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH HIS A -13 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH HIS A -12 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH HIS A -11 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH SER A -10 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH SER A -9 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH GLY A -8 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH ARG A -7 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH GLU A -6 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH ASN A -5 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH LEU A -4 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH TYR A -3 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH PHE A -2 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH GLN A -1 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH GLY A 0 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5GXH GLN A 682 UNP Q8TEQ6 ARG 682 VARIANT SEQRES 1 A 757 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 757 LEU TYR PHE GLN GLY MET GLY GLN GLU PRO ARG THR LEU SEQRES 3 A 757 PRO PRO SER PRO ASN TRP TYR CYS ALA ARG CYS SER ASP SEQRES 4 A 757 ALA VAL PRO GLY GLY LEU PHE GLY PHE ALA ALA ARG THR SEQRES 5 A 757 SER VAL PHE LEU VAL ARG VAL GLY PRO GLY ALA GLY GLU SEQRES 6 A 757 SER PRO GLY THR PRO PRO PHE ARG VAL ILE GLY GLU LEU SEQRES 7 A 757 VAL GLY HIS THR GLU ARG VAL SER GLY PHE THR PHE SER SEQRES 8 A 757 HIS HIS PRO GLY GLN TYR ASN LEU CYS ALA THR SER SER SEQRES 9 A 757 ASP ASP GLY THR VAL LYS ILE TRP ASP VAL GLU THR LYS SEQRES 10 A 757 THR VAL VAL THR GLU HIS ALA LEU HIS GLN HIS THR ILE SEQRES 11 A 757 SER THR LEU HIS TRP SER PRO ARG VAL LYS ASP LEU ILE SEQRES 12 A 757 VAL SER GLY ASP GLU LYS GLY VAL VAL PHE CYS TYR TRP SEQRES 13 A 757 PHE ASN ARG ASN ASP SER GLN HIS LEU PHE ILE GLU PRO SEQRES 14 A 757 ARG THR ILE PHE CYS LEU THR CYS SER PRO HIS HIS GLU SEQRES 15 A 757 ASP LEU VAL ALA ILE GLY TYR LYS ASP GLY ILE VAL VAL SEQRES 16 A 757 ILE ILE ASP ILE SER LYS LYS GLY GLU VAL ILE HIS ARG SEQRES 17 A 757 LEU ARG GLY HIS ASP ASP GLU ILE HIS SER ILE ALA TRP SEQRES 18 A 757 CYS PRO LEU PRO GLY GLU ASP CYS LEU SER ILE ASN GLN SEQRES 19 A 757 GLU GLU THR SER GLU GLU ALA GLU ILE THR ASN GLY ASN SEQRES 20 A 757 ALA VAL ALA GLN ALA PRO VAL THR LYS GLY CYS TYR LEU SEQRES 21 A 757 ALA THR GLY SER LYS ASP GLN THR ILE ARG ILE TRP SER SEQRES 22 A 757 CYS SER ARG GLY ARG GLY VAL MET ILE LEU LYS LEU PRO SEQRES 23 A 757 PHE LEU LYS ARG ARG GLY GLY GLY ILE ASP PRO THR VAL SEQRES 24 A 757 LYS GLU ARG LEU TRP LEU THR LEU HIS TRP PRO SER ASN SEQRES 25 A 757 GLN PRO THR GLN LEU VAL SER SER CYS PHE GLY GLY GLU SEQRES 26 A 757 LEU LEU GLN TRP ASP LEU THR GLN SER TRP ARG ARG LYS SEQRES 27 A 757 TYR THR LEU PHE SER ALA SER SER GLU GLY GLN ASN HIS SEQRES 28 A 757 SER ARG ILE VAL PHE ASN LEU CYS PRO LEU GLN THR GLU SEQRES 29 A 757 ASP ASP LYS GLN LEU LEU LEU SER THR SER MET ASP ARG SEQRES 30 A 757 ASP VAL LYS CYS TRP ASP ILE ALA THR LEU GLU CYS SER SEQRES 31 A 757 TRP THR LEU PRO SER LEU GLY GLY PHE ALA TYR SER LEU SEQRES 32 A 757 ALA PHE SER SER VAL ASP ILE GLY SER LEU ALA ILE GLY SEQRES 33 A 757 VAL GLY ASP GLY MET ILE ARG VAL TRP ASN THR LEU SER SEQRES 34 A 757 ILE LYS ASN ASN TYR ASP VAL LYS ASN PHE TRP GLN GLY SEQRES 35 A 757 VAL LYS SER LYS VAL THR ALA LEU CYS TRP HIS PRO THR SEQRES 36 A 757 LYS GLU GLY CYS LEU ALA PHE GLY THR ASP ASP GLY LYS SEQRES 37 A 757 VAL GLY LEU TYR ASP THR TYR SER ASN LYS PRO PRO GLN SEQRES 38 A 757 ILE SER SER THR TYR HIS LYS LYS THR VAL TYR THR LEU SEQRES 39 A 757 ALA TRP GLY PRO PRO VAL PRO PRO MET SER LEU GLY GLY SEQRES 40 A 757 GLU GLY ASP ARG PRO SER LEU ALA LEU TYR SER CYS GLY SEQRES 41 A 757 GLY GLU GLY ILE VAL LEU GLN HIS ASN PRO TRP LYS LEU SEQRES 42 A 757 SER GLY GLU ALA PHE ASP ILE ASN LYS LEU ILE ARG ASP SEQRES 43 A 757 THR ASN SER ILE LYS TYR LYS LEU PRO VAL HIS THR GLU SEQRES 44 A 757 ILE SER TRP LYS ALA ASP GLY LYS ILE MET ALA LEU GLY SEQRES 45 A 757 ASN GLU ASP GLY SER ILE GLU ILE PHE GLN ILE PRO ASN SEQRES 46 A 757 LEU LYS LEU ILE CYS THR ILE GLN GLN HIS HIS LYS LEU SEQRES 47 A 757 VAL ASN THR ILE SER TRP HIS HIS GLU HIS GLY SER GLN SEQRES 48 A 757 PRO GLU LEU SER TYR LEU MET ALA SER GLY SER ASN ASN SEQRES 49 A 757 ALA VAL ILE TYR VAL HIS ASN LEU LYS THR VAL ILE GLU SEQRES 50 A 757 SER SER PRO GLU SER PRO VAL THR ILE THR GLU PRO TYR SEQRES 51 A 757 ARG THR LEU SER GLY HIS THR ALA LYS ILE THR SER VAL SEQRES 52 A 757 ALA TRP SER PRO HIS HIS ASP GLY ARG LEU VAL SER ALA SEQRES 53 A 757 SER TYR ASP GLY THR ALA GLN VAL TRP ASP ALA LEU ARG SEQRES 54 A 757 GLU GLU PRO LEU CYS ASN PHE ARG GLY HIS GLN GLY ARG SEQRES 55 A 757 LEU LEU CYS VAL ALA TRP SER PRO LEU ASP PRO ASP CYS SEQRES 56 A 757 ILE TYR SER GLY ALA ASP ASP PHE CYS VAL HIS LYS TRP SEQRES 57 A 757 LEU THR SER MET GLN ASP HIS SER ARG PRO PRO GLN GLY SEQRES 58 A 757 LYS LYS SER ILE GLU LEU GLU LYS LYS ARG LEU SER GLN SEQRES 59 A 757 PRO LYS ALA SEQRES 1 B 8 A A U U U U U G HET UNX A 801 1 HET UNX A 802 1 HET GOL A 803 6 HET GOL A 804 6 HET UNX B 101 1 HETNAM UNX UNKNOWN ATOM OR ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 UNX 3(X) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 8 HOH *317(H2 O) HELIX 1 AA1 PRO A 43 GLY A 46 5 4 HELIX 2 AA2 SER A 182 LYS A 184 5 3 HELIX 3 AA3 PHE A 304 GLY A 306 5 3 HELIX 4 AA4 ILE A 522 SER A 531 1 10 HELIX 5 AA5 GLN A 593 SER A 597 5 5 HELIX 6 AA6 LEU A 614 SER A 620 1 7 HELIX 7 AA7 SER A 713 GLN A 715 5 3 SHEET 1 AA1 4 ARG A 6 LEU A 8 0 SHEET 2 AA1 4 VAL A 707 LEU A 711 -1 O LYS A 709 N ARG A 6 SHEET 3 AA1 4 CYS A 697 ALA A 702 -1 N ILE A 698 O TRP A 710 SHEET 4 AA1 4 LEU A 685 TRP A 690 -1 N ALA A 689 O TYR A 699 SHEET 1 AA2 4 SER A 20 VAL A 23 0 SHEET 2 AA2 4 LEU A 27 ALA A 32 -1 O GLY A 29 N ASP A 21 SHEET 3 AA2 4 SER A 35 VAL A 41 -1 O VAL A 39 N PHE A 28 SHEET 4 AA2 4 PHE A 54 LEU A 60 -1 O LEU A 60 N VAL A 36 SHEET 1 AA3 4 VAL A 67 PHE A 72 0 SHEET 2 AA3 4 LEU A 81 SER A 86 -1 O ALA A 83 N THR A 71 SHEET 3 AA3 4 VAL A 91 ASP A 95 -1 O TRP A 94 N CYS A 82 SHEET 4 AA3 4 THR A 100 HIS A 105 -1 O VAL A 102 N ILE A 93 SHEET 1 AA4 4 ILE A 112 TRP A 117 0 SHEET 2 AA4 4 LEU A 124 ASP A 129 -1 O GLY A 128 N SER A 113 SHEET 3 AA4 4 VAL A 133 TRP A 138 -1 O TYR A 137 N ILE A 125 SHEET 4 AA4 4 ASP A 143 PHE A 148 -1 O GLN A 145 N CYS A 136 SHEET 1 AA5 4 ILE A 154 CYS A 159 0 SHEET 2 AA5 4 LEU A 166 TYR A 171 -1 O GLY A 170 N PHE A 155 SHEET 3 AA5 4 VAL A 176 ASP A 180 -1 O ILE A 179 N VAL A 167 SHEET 4 AA5 4 VAL A 187 LEU A 191 -1 O ILE A 188 N ILE A 178 SHEET 1 AA6 4 ILE A 198 TRP A 203 0 SHEET 2 AA6 4 TYR A 241 SER A 246 -1 O ALA A 243 N ALA A 202 SHEET 3 AA6 4 THR A 250 SER A 255 -1 O TRP A 254 N LEU A 242 SHEET 4 AA6 4 ARG A 260 LYS A 266 -1 O VAL A 262 N ILE A 253 SHEET 1 AA7 4 LEU A 289 HIS A 290 0 SHEET 2 AA7 4 GLN A 298 SER A 302 -1 O VAL A 300 N HIS A 290 SHEET 3 AA7 4 LEU A 308 ASP A 312 -1 O TRP A 311 N LEU A 299 SHEET 4 AA7 4 TYR A 321 LEU A 323 -1 O THR A 322 N GLN A 310 SHEET 1 AA8 4 VAL A 337 GLN A 344 0 SHEET 2 AA8 4 GLN A 350 SER A 356 -1 O LEU A 351 N LEU A 343 SHEET 3 AA8 4 ASP A 360 ASP A 365 -1 O TRP A 364 N LEU A 352 SHEET 4 AA8 4 CYS A 371 PRO A 376 -1 O LEU A 375 N VAL A 361 SHEET 1 AA9 4 ALA A 382 PHE A 387 0 SHEET 2 AA9 4 SER A 394 VAL A 399 -1 O ALA A 396 N ALA A 386 SHEET 3 AA9 4 ILE A 404 ASN A 408 -1 O TRP A 407 N LEU A 395 SHEET 4 AA9 4 VAL A 418 PHE A 421 -1 O PHE A 421 N ILE A 404 SHEET 1 AB1 4 VAL A 429 TRP A 434 0 SHEET 2 AB1 4 CYS A 441 THR A 446 -1 O GLY A 445 N ALA A 431 SHEET 3 AB1 4 VAL A 451 ASP A 455 -1 O TYR A 454 N LEU A 442 SHEET 4 AB1 4 GLN A 463 ILE A 464 -1 O GLN A 463 N LEU A 453 SHEET 1 AB2 4 VAL A 473 GLY A 479 0 SHEET 2 AB2 4 ALA A 497 GLY A 502 -1 O TYR A 499 N ALA A 477 SHEET 3 AB2 4 VAL A 507 HIS A 510 -1 O HIS A 510 N LEU A 498 SHEET 4 AB2 4 PHE A 520 ASP A 521 -1 O PHE A 520 N GLN A 509 SHEET 1 AB3 5 HIS A 539 TRP A 544 0 SHEET 2 AB3 5 ILE A 550 ASN A 555 -1 O GLY A 554 N THR A 540 SHEET 3 AB3 5 ILE A 560 GLN A 564 -1 O PHE A 563 N MET A 551 SHEET 4 AB3 5 LYS A 569 ILE A 574 -1 O ILE A 574 N ILE A 560 SHEET 5 AB3 5 VAL A 626 ILE A 628 1 O ILE A 628 N THR A 573 SHEET 1 AB4 4 VAL A 581 TRP A 586 0 SHEET 2 AB4 4 LEU A 599 SER A 604 -1 O ALA A 601 N SER A 585 SHEET 3 AB4 4 ILE A 609 ASN A 613 -1 O HIS A 612 N MET A 600 SHEET 4 AB4 4 ARG A 633 LEU A 635 -1 O LEU A 635 N ILE A 609 SHEET 1 AB5 4 ILE A 642 TRP A 647 0 SHEET 2 AB5 4 ARG A 654 SER A 659 -1 O ALA A 658 N SER A 644 SHEET 3 AB5 4 ALA A 664 ASP A 668 -1 O TRP A 667 N LEU A 655 SHEET 4 AB5 4 GLU A 673 PHE A 678 -1 O LEU A 675 N VAL A 666 SSBOND 1 CYS A 240 CYS A 256 1555 1555 2.10 CISPEP 1 GLY A 25 GLY A 26 0 0.38 CISPEP 2 PRO A 483 PRO A 484 0 7.87 CISPEP 3 ILE A 565 PRO A 566 0 4.84 SITE 1 AC1 5 HIS A 290 SER A 293 ASN A 294 PRO A 342 SITE 2 AC1 5 GLN A 350 SITE 1 AC2 7 TYR A 15 SER A 113 PHE A 155 HOH A 982 SITE 2 AC2 7 HOH A1002 HOH A1076 HOH B 202 CRYST1 58.138 124.459 60.808 90.00 116.96 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017200 0.000000 0.008747 0.00000 SCALE2 0.000000 0.008035 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018449 0.00000