HEADER TRANSFERASE 29-OCT-15 5EI8 TITLE RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF MONOPOLAR TITLE 2 SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED HYDRIDIZATION TITLE 3 APPROACH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE,PYT; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-[2-METHOXY-4-(1-METHYL-1H-PYRAZOL-4-YL)PHENYL]-8-(1- COMPND 8 METHYL-1H-PYRAZOL-4-YL)PYRIDO[3,4-D]PYRIMIDIN-2-AMINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTK, MPS1, MPS1L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SPINDLE ASSEMBLY CHECKPOINT (SAC), ONCOLOGY TARGET PYRIDO[3, 4- KEYWDS 2 D]PYRIMIDINE BASED INHIBITORS SELECTIVE AGAINST MPS1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,N.NAUD,I.M.WESTWOOD,N.CRONIN, AUTHOR 2 A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL,G.MAK,G.BOX,M.VALENTI, AUTHOR 3 A.DE HAVEN BRANDON,L.O'FEE,J.SAVILLE,J.SCHMITT,R.BURKE,R.L.M.VAN AUTHOR 4 MONTFORT,F.I.RAYMAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER REVDAT 3 30-AUG-17 5EI8 1 REMARK REVDAT 2 11-MAY-16 5EI8 1 JRNL REVDAT 1 20-APR-16 5EI8 0 JRNL AUTH P.INNOCENTI,H.L.WOODWARD,S.SOLANKI,S.NAUD,I.M.WESTWOOD, JRNL AUTH 2 N.CRONIN,A.HAYES,J.ROBERTS,A.T.HENLEY,R.BAKER,A.FAISAL, JRNL AUTH 3 G.W.MAK,G.BOX,M.VALENTI,A.DE HAVEN BRANDON,L.O'FEE, JRNL AUTH 4 H.SAVILLE,J.SCHMITT,B.MATIJSSEN,R.BURKE,R.L.VAN MONTFORT, JRNL AUTH 5 F.I.RAYNAUD,S.A.ECCLES,S.LINARDOPOULOS,J.BLAGG,S.HOELDER JRNL TITL RAPID DISCOVERY OF PYRIDO[3,4-D]PYRIMIDINE INHIBITORS OF JRNL TITL 2 MONOPOLAR SPINDLE KINASE 1 (MPS1) USING A STRUCTURE-BASED JRNL TITL 3 HYBRIDIZATION APPROACH. JRNL REF J.MED.CHEM. V. 59 3671 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27055065 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01811 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2604 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE : 0.2391 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.22670 REMARK 3 B22 (A**2) : 3.43110 REMARK 3 B33 (A**2) : -8.65780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.405 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.191 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.167 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.193 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.169 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2130 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2894 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 704 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 52 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 333 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2130 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 286 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2419 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.95 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.60 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|516 - 561} REMARK 3 ORIGIN FOR THE GROUP (A): 10.3827 -30.2962 -7.5730 REMARK 3 T TENSOR REMARK 3 T11: -0.1386 T22: 0.1497 REMARK 3 T33: -0.2853 T12: -0.0396 REMARK 3 T13: -0.0453 T23: 0.1514 REMARK 3 L TENSOR REMARK 3 L11: 8.3155 L22: 7.8239 REMARK 3 L33: 7.8355 L12: 2.7143 REMARK 3 L13: -2.6261 L23: -0.7499 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: -0.5442 S13: -0.2124 REMARK 3 S21: 0.5437 S22: -0.0232 S23: -0.4511 REMARK 3 S31: -0.0196 S32: 0.0532 S33: 0.0969 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|562 - 580} REMARK 3 ORIGIN FOR THE GROUP (A): 8.7834 -27.8700 -24.9652 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.3040 REMARK 3 T33: -0.0492 T12: -0.1292 REMARK 3 T13: 0.0122 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 5.4927 L22: 1.3288 REMARK 3 L33: 5.3633 L12: 0.7787 REMARK 3 L13: 2.8022 L23: -0.6466 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.3161 S13: -0.2570 REMARK 3 S21: -0.0620 S22: 0.1699 S23: -0.1226 REMARK 3 S31: -0.1051 S32: -0.1106 S33: -0.1737 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|581 - 620} REMARK 3 ORIGIN FOR THE GROUP (A): 0.4192 -30.7919 -14.0803 REMARK 3 T TENSOR REMARK 3 T11: -0.1221 T22: 0.2784 REMARK 3 T33: -0.2687 T12: -0.0198 REMARK 3 T13: 0.0793 T23: 0.1402 REMARK 3 L TENSOR REMARK 3 L11: 8.2273 L22: 2.9890 REMARK 3 L33: 2.9750 L12: 1.2473 REMARK 3 L13: 2.9104 L23: -0.3763 REMARK 3 S TENSOR REMARK 3 S11: 0.0716 S12: -0.1130 S13: 0.2900 REMARK 3 S21: 0.2195 S22: 0.0673 S23: -0.0530 REMARK 3 S31: -0.2167 S32: -0.5017 S33: -0.1389 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|621 - 641} REMARK 3 ORIGIN FOR THE GROUP (A): -13.0317 -30.3928 -22.6143 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.2802 REMARK 3 T33: -0.1274 T12: 0.0779 REMARK 3 T13: -0.0286 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 7.2371 L22: 5.2703 REMARK 3 L33: 5.9138 L12: 1.7674 REMARK 3 L13: 2.1083 L23: -1.3399 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.1609 S13: 0.0920 REMARK 3 S21: -0.1431 S22: -0.1934 S23: 0.1681 REMARK 3 S31: -0.2562 S32: 0.0448 S33: 0.1943 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|642 - 691} REMARK 3 ORIGIN FOR THE GROUP (A): -2.0653 -37.6187 -21.1294 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.3040 REMARK 3 T33: -0.2803 T12: -0.0302 REMARK 3 T13: 0.0030 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 8.0722 L22: 4.4326 REMARK 3 L33: 5.1731 L12: 1.0101 REMARK 3 L13: 1.4290 L23: 0.6194 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: 0.2724 S13: -0.2832 REMARK 3 S21: 0.2156 S22: 0.0037 S23: -0.1152 REMARK 3 S31: 0.0070 S32: 0.0399 S33: -0.1916 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|692 - 729} REMARK 3 ORIGIN FOR THE GROUP (A): -9.5030 -42.0434 -31.2203 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.3040 REMARK 3 T33: -0.2904 T12: -0.0278 REMARK 3 T13: -0.0259 T23: 0.1008 REMARK 3 L TENSOR REMARK 3 L11: 1.0849 L22: 6.0132 REMARK 3 L33: 0.0000 L12: -0.7439 REMARK 3 L13: 2.2683 L23: -1.6590 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: 0.1345 S13: -0.3922 REMARK 3 S21: -0.2861 S22: 0.0077 S23: 0.0692 REMARK 3 S31: 0.2546 S32: 0.0275 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|730 - 761} REMARK 3 ORIGIN FOR THE GROUP (A): -13.8837 -52.2022 -29.5712 REMARK 3 T TENSOR REMARK 3 T11: -0.2399 T22: 0.2889 REMARK 3 T33: -0.1478 T12: -0.1236 REMARK 3 T13: -0.0391 T23: 0.0769 REMARK 3 L TENSOR REMARK 3 L11: 4.7947 L22: 4.2683 REMARK 3 L33: 1.3680 L12: -1.5986 REMARK 3 L13: 1.0624 L23: -0.5762 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.1119 S13: -0.2270 REMARK 3 S21: -0.1736 S22: 0.1811 S23: 0.4597 REMARK 3 S31: 0.5365 S32: -0.0304 S33: -0.1467 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|762 - 794} REMARK 3 ORIGIN FOR THE GROUP (A): -19.7007 -35.8088 -31.3368 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.3040 REMARK 3 T33: -0.1469 T12: -0.0183 REMARK 3 T13: -0.0690 T23: 0.1520 REMARK 3 L TENSOR REMARK 3 L11: 4.8598 L22: 4.8641 REMARK 3 L33: 0.0000 L12: -2.0641 REMARK 3 L13: 2.9104 L23: -2.8690 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.4162 S13: -0.1170 REMARK 3 S21: -0.2093 S22: 0.1307 S23: 0.5182 REMARK 3 S31: 0.1571 S32: -0.2655 S33: -0.1174 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5EI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 39.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 21.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE 0.2 M NGCL2 0.2 REMARK 280 M SODIUM FORMATE 20 % PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.00150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.99150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.43400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.00150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.99150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.43400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.00150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.99150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.43400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.00150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.99150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.43400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 SER A 503 REMARK 465 SER A 504 REMARK 465 GLY A 505 REMARK 465 VAL A 506 REMARK 465 ASP A 507 REMARK 465 LEU A 508 REMARK 465 GLY A 509 REMARK 465 THR A 510 REMARK 465 GLU A 511 REMARK 465 ASN A 512 REMARK 465 LEU A 513 REMARK 465 TYR A 514 REMARK 465 PHE A 515 REMARK 465 THR A 675 REMARK 465 THR A 676 REMARK 465 SER A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 ASP A 681 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 516 CG CD OE1 NE2 REMARK 470 ARG A 523 CD NE CZ NH1 NH2 REMARK 470 LYS A 529 NZ REMARK 470 LYS A 538 CE NZ REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 LYS A 546 CG CD CE NZ REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 GLN A 563 CG CD OE1 NE2 REMARK 470 LYS A 577 CE NZ REMARK 470 GLN A 580 CD OE1 NE2 REMARK 470 GLN A 596 CD OE1 NE2 REMARK 470 LYS A 614 CE NZ REMARK 470 LYS A 615 CE NZ REMARK 470 LYS A 616 CE NZ REMARK 470 LYS A 617 CG CD CE NZ REMARK 470 SER A 618 OG REMARK 470 LYS A 629 CG CD CE NZ REMARK 470 ASP A 657 CG OD1 OD2 REMARK 470 VAL A 684 CG1 CG2 REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 GLU A 753 CG CD OE1 OE2 REMARK 470 GLU A 755 CG CD OE1 OE2 REMARK 470 LYS A 762 CG CD CE NZ REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 LYS A 773 CD CE NZ REMARK 470 LYS A 777 CG CD CE NZ REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 470 THR A 795 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 530 OD2 ASP A 674 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 646 -3.86 71.71 REMARK 500 ILE A 667 -62.91 -100.46 REMARK 500 LEU A 772 38.82 -99.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5OE A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EH0 RELATED DB: PDB REMARK 900 5EH0 CONTAINS THE SAMPLE PROTEIN MPS1 COMPLEXED WITH N2-(2-METHOXY- REMARK 900 4-(1-METHYL-1H-PYRAZOL-4-YL)PHENYL)-N8-NEOPENTYLPYRIDO[3,4-D] REMARK 900 PYRIMIDINE-2,8-DIAMINE DBREF 5EI8 A 519 753 UNP P33981 TTK_HUMAN 519 753 SEQADV 5EI8 MET A 496 UNP P33981 INITIATING METHIONINE SEQADV 5EI8 HIS A 497 UNP P33981 EXPRESSION TAG SEQADV 5EI8 HIS A 498 UNP P33981 EXPRESSION TAG SEQADV 5EI8 HIS A 499 UNP P33981 EXPRESSION TAG SEQADV 5EI8 HIS A 500 UNP P33981 EXPRESSION TAG SEQADV 5EI8 HIS A 501 UNP P33981 EXPRESSION TAG SEQADV 5EI8 HIS A 502 UNP P33981 EXPRESSION TAG SEQADV 5EI8 SER A 503 UNP P33981 EXPRESSION TAG SEQADV 5EI8 SER A 504 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLY A 505 UNP P33981 EXPRESSION TAG SEQADV 5EI8 VAL A 506 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ASP A 507 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LEU A 508 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLY A 509 UNP P33981 EXPRESSION TAG SEQADV 5EI8 THR A 510 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLU A 511 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ASN A 512 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LEU A 513 UNP P33981 EXPRESSION TAG SEQADV 5EI8 TYR A 514 UNP P33981 EXPRESSION TAG SEQADV 5EI8 PHE A 515 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLN A 516 UNP P33981 EXPRESSION TAG SEQADV 5EI8 SER A 517 UNP P33981 EXPRESSION TAG SEQADV 5EI8 MET A 518 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ILE A 754 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLU A 755 UNP P33981 EXPRESSION TAG SEQADV 5EI8 PHE A 756 UNP P33981 EXPRESSION TAG SEQADV 5EI8 PRO A 757 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ASP A 758 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ILE A 759 UNP P33981 EXPRESSION TAG SEQADV 5EI8 PRO A 760 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLU A 761 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LYS A 762 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ASP A 763 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LEU A 764 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLN A 765 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ASP A 766 UNP P33981 EXPRESSION TAG SEQADV 5EI8 VAL A 767 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LEU A 768 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LYS A 769 UNP P33981 EXPRESSION TAG SEQADV 5EI8 CYS A 770 UNP P33981 EXPRESSION TAG SEQADV 5EI8 CYS A 771 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LEU A 772 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LYS A 773 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ARG A 774 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ASP A 775 UNP P33981 EXPRESSION TAG SEQADV 5EI8 PRO A 776 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LYS A 777 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLN A 778 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ARG A 779 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ILE A 780 UNP P33981 EXPRESSION TAG SEQADV 5EI8 SER A 781 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ILE A 782 UNP P33981 EXPRESSION TAG SEQADV 5EI8 PRO A 783 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLU A 784 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LEU A 785 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LEU A 786 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ALA A 787 UNP P33981 EXPRESSION TAG SEQADV 5EI8 HIS A 788 UNP P33981 EXPRESSION TAG SEQADV 5EI8 PRO A 789 UNP P33981 EXPRESSION TAG SEQADV 5EI8 TYR A 790 UNP P33981 EXPRESSION TAG SEQADV 5EI8 VAL A 791 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLN A 792 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ILE A 793 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLN A 794 UNP P33981 EXPRESSION TAG SEQADV 5EI8 THR A 795 UNP P33981 EXPRESSION TAG SEQADV 5EI8 HIS A 796 UNP P33981 EXPRESSION TAG SEQADV 5EI8 PRO A 797 UNP P33981 EXPRESSION TAG SEQADV 5EI8 VAL A 798 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ASN A 799 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLN A 800 UNP P33981 EXPRESSION TAG SEQADV 5EI8 MET A 801 UNP P33981 EXPRESSION TAG SEQADV 5EI8 ALA A 802 UNP P33981 EXPRESSION TAG SEQADV 5EI8 LYS A 803 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLY A 804 UNP P33981 EXPRESSION TAG SEQADV 5EI8 THR A 805 UNP P33981 EXPRESSION TAG SEQADV 5EI8 THR A 806 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLU A 807 UNP P33981 EXPRESSION TAG SEQADV 5EI8 GLU A 808 UNP P33981 EXPRESSION TAG SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER VAL LYS SEQRES 3 A 313 GLY ARG ILE TYR SER ILE LEU LYS GLN ILE GLY SER GLY SEQRES 4 A 313 GLY SER SER LYS VAL PHE GLN VAL LEU ASN GLU LYS LYS SEQRES 5 A 313 GLN ILE TYR ALA ILE LYS TYR VAL ASN LEU GLU GLU ALA SEQRES 6 A 313 ASP ASN GLN THR LEU ASP SER TYR ARG ASN GLU ILE ALA SEQRES 7 A 313 TYR LEU ASN LYS LEU GLN GLN HIS SER ASP LYS ILE ILE SEQRES 8 A 313 ARG LEU TYR ASP TYR GLU ILE THR ASP GLN TYR ILE TYR SEQRES 9 A 313 MET VAL MET GLU CYS GLY ASN ILE ASP LEU ASN SER TRP SEQRES 10 A 313 LEU LYS LYS LYS LYS SER ILE ASP PRO TRP GLU ARG LYS SEQRES 11 A 313 SER TYR TRP LYS ASN MET LEU GLU ALA VAL HIS THR ILE SEQRES 12 A 313 HIS GLN HIS GLY ILE VAL HIS SER ASP LEU LYS PRO ALA SEQRES 13 A 313 ASN PHE LEU ILE VAL ASP GLY MET LEU LYS LEU ILE ASP SEQRES 14 A 313 PHE GLY ILE ALA ASN GLN MET GLN PRO ASP THR THR SER SEQRES 15 A 313 VAL VAL LYS ASP SER GLN VAL GLY THR VAL ASN TYR MET SEQRES 16 A 313 PRO PRO GLU ALA ILE LYS ASP MET SER SER SER ARG GLU SEQRES 17 A 313 ASN GLY LYS SER LYS SER LYS ILE SER PRO LYS SER ASP SEQRES 18 A 313 VAL TRP SER LEU GLY CYS ILE LEU TYR TYR MET THR TYR SEQRES 19 A 313 GLY LYS THR PRO PHE GLN GLN ILE ILE ASN GLN ILE SER SEQRES 20 A 313 LYS LEU HIS ALA ILE ILE ASP PRO ASN HIS GLU ILE GLU SEQRES 21 A 313 PHE PRO ASP ILE PRO GLU LYS ASP LEU GLN ASP VAL LEU SEQRES 22 A 313 LYS CYS CYS LEU LYS ARG ASP PRO LYS GLN ARG ILE SER SEQRES 23 A 313 ILE PRO GLU LEU LEU ALA HIS PRO TYR VAL GLN ILE GLN SEQRES 24 A 313 THR HIS PRO VAL ASN GLN MET ALA LYS GLY THR THR GLU SEQRES 25 A 313 GLU HET 5OE A 901 31 HET DMS A 902 4 HET DMS A 903 4 HET DMS A 904 4 HETNAM 5OE ~{N}-[2-METHOXY-4-(1-METHYLPYRAZOL-4-YL)PHENYL]-8-(1- HETNAM 2 5OE METHYLPYRAZOL-4-YL)PYRIDO[3,4-D]PYRIMIDIN-2-AMINE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 5OE C22 H20 N8 O FORMUL 3 DMS 3(C2 H6 O S) FORMUL 6 HOH *40(H2 O) HELIX 1 AA1 ASP A 561 GLN A 579 1 19 HELIX 2 AA2 LEU A 609 LYS A 616 1 8 HELIX 3 AA3 ASP A 620 HIS A 641 1 22 HELIX 4 AA4 LYS A 649 ALA A 651 5 3 HELIX 5 AA5 PRO A 691 ASP A 697 1 7 HELIX 6 AA6 SER A 712 GLY A 730 1 19 HELIX 7 AA7 ASN A 739 ILE A 748 1 10 HELIX 8 AA8 GLU A 761 LEU A 772 1 12 HELIX 9 AA9 SER A 781 LEU A 786 1 6 HELIX 10 AB1 HIS A 788 ILE A 793 1 6 SHEET 1 AA1 6 SER A 517 VAL A 520 0 SHEET 2 AA1 6 ARG A 523 GLY A 534 -1 O ARG A 523 N VAL A 520 SHEET 3 AA1 6 SER A 537 LEU A 543 -1 O GLN A 541 N LYS A 529 SHEET 4 AA1 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538 SHEET 5 AA1 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551 SHEET 6 AA1 6 LEU A 588 ILE A 593 -1 N GLU A 592 O TYR A 599 SHEET 1 AA2 3 SER A 517 VAL A 520 0 SHEET 2 AA2 3 ARG A 523 GLY A 534 -1 O ARG A 523 N VAL A 520 SHEET 3 AA2 3 GLN A 672 PRO A 673 -1 O GLN A 672 N SER A 533 SHEET 1 AA3 3 ILE A 607 ASP A 608 0 SHEET 2 AA3 3 PHE A 653 ILE A 655 -1 O ILE A 655 N ILE A 607 SHEET 3 AA3 3 LEU A 660 LEU A 662 -1 O LYS A 661 N LEU A 654 SITE 1 AC1 12 ILE A 531 ALA A 551 ILE A 586 MET A 602 SITE 2 AC1 12 GLU A 603 CYS A 604 GLY A 605 ASN A 606 SITE 3 AC1 12 ASP A 608 SER A 611 LEU A 654 PRO A 673 SITE 1 AC2 1 TYR A 599 SITE 1 AC3 1 TYR A 550 SITE 1 AC4 5 LYS A 547 GLN A 548 ILE A 549 TYR A 550 SITE 2 AC4 5 TYR A 589 CRYST1 70.003 101.983 110.868 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014285 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009806 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009020 0.00000