HEADER SIGNALING PROTEIN 02-SEP-15 5DJU TITLE CRYSTAL STRUCTURE OF LOV2 (C450A) DOMAIN IN COMPLEX WITH ZDK3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENGINEERED PROTEIN, ZDK3 AFFIBODY; COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NPH1-2; COMPND 7 CHAIN: A, C; COMPND 8 FRAGMENT: UNP RESIDUES 404-546; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: AVENA SATIVA; SOURCE 8 ORGANISM_COMMON: OAT; SOURCE 9 ORGANISM_TAXID: 4498; SOURCE 10 GENE: NPH1-2; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN BINDING, PROTEIN ENGINEERING, SIGNALING PROTEIN, PHOTOSWITCH, KEYWDS 2 LIGHT-INDUCED SIGNAL TRANSDUCTION, LOV2, AFFIBODY, COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.TARNAWSKI,H.WANG,H.YUMEREFENDI,K.M.HAHN,I.SCHLICHTING REVDAT 4 10-JAN-24 5DJU 1 REMARK REVDAT 3 07-SEP-16 5DJU 1 JRNL REVDAT 2 27-JUL-16 5DJU 1 JRNL REVDAT 1 20-JUL-16 5DJU 0 JRNL AUTH H.WANG,M.VILELA,A.WINKLER,M.TARNAWSKI,I.SCHLICHTING, JRNL AUTH 2 H.YUMEREFENDI,B.KUHLMAN,R.LIU,G.DANUSER,K.M.HAHN JRNL TITL LOVTRAP: AN OPTOGENETIC SYSTEM FOR PHOTOINDUCED PROTEIN JRNL TITL 2 DISSOCIATION. JRNL REF NAT.METHODS V. 13 755 2016 JRNL REFN ESSN 1548-7105 JRNL PMID 27427858 JRNL DOI 10.1038/NMETH.3926 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 26338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2621 - 4.3669 0.97 2952 156 0.1916 0.2320 REMARK 3 2 4.3669 - 3.4666 0.98 2834 149 0.1778 0.2203 REMARK 3 3 3.4666 - 3.0285 0.98 2800 147 0.2020 0.2517 REMARK 3 4 3.0285 - 2.7517 0.98 2816 149 0.2127 0.2798 REMARK 3 5 2.7517 - 2.5545 0.99 2804 147 0.2094 0.2649 REMARK 3 6 2.5545 - 2.4039 0.99 2775 146 0.2307 0.2828 REMARK 3 7 2.4039 - 2.2835 0.99 2823 149 0.2298 0.2956 REMARK 3 8 2.2835 - 2.1841 0.98 2745 144 0.2383 0.3303 REMARK 3 9 2.1841 - 2.1000 0.87 2471 131 0.2662 0.3440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3358 REMARK 3 ANGLE : 1.073 4553 REMARK 3 CHIRALITY : 0.046 499 REMARK 3 PLANARITY : 0.006 591 REMARK 3 DIHEDRAL : 15.062 1269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5963 13.8325 -10.3308 REMARK 3 T TENSOR REMARK 3 T11: 0.2568 T22: 0.3710 REMARK 3 T33: 0.2936 T12: 0.0792 REMARK 3 T13: 0.0491 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 3.3938 L22: 6.1410 REMARK 3 L33: 5.2823 L12: 4.2278 REMARK 3 L13: 2.6501 L23: 1.8669 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: 0.8718 S13: 0.4575 REMARK 3 S21: -0.3678 S22: 0.2063 S23: 0.2827 REMARK 3 S31: -0.1065 S32: 0.1907 S33: -0.3161 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8505 14.6891 1.7736 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.2667 REMARK 3 T33: 0.3110 T12: -0.0236 REMARK 3 T13: 0.0408 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.3935 L22: 2.5669 REMARK 3 L33: 4.1793 L12: -0.3092 REMARK 3 L13: 0.0558 L23: 0.5995 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: -0.0931 S13: 0.4044 REMARK 3 S21: 0.1154 S22: 0.0401 S23: -0.0497 REMARK 3 S31: -0.1489 S32: 0.3518 S33: -0.0767 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 402 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2976 -5.9501 -8.0621 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.2518 REMARK 3 T33: 0.2242 T12: 0.0115 REMARK 3 T13: -0.0339 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.3021 L22: 4.1294 REMARK 3 L33: 2.3027 L12: -0.2046 REMARK 3 L13: 0.4200 L23: 0.8065 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: 0.0136 S13: -0.1456 REMARK 3 S21: -0.1118 S22: 0.0067 S23: -0.1563 REMARK 3 S31: 0.2426 S32: 0.2883 S33: -0.0963 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 522 THROUGH 546 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3678 -7.2676 0.2772 REMARK 3 T TENSOR REMARK 3 T11: 0.3326 T22: 0.4131 REMARK 3 T33: 0.3472 T12: 0.0115 REMARK 3 T13: -0.1060 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 7.4405 L22: 5.0118 REMARK 3 L33: 4.5949 L12: -5.8262 REMARK 3 L13: -5.0517 L23: 4.5982 REMARK 3 S TENSOR REMARK 3 S11: -0.4517 S12: -0.1852 S13: -0.0085 REMARK 3 S21: 0.8769 S22: 0.8062 S23: -0.3539 REMARK 3 S31: 0.6383 S32: 0.5856 S33: -0.2550 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7725 -8.5190 -35.8718 REMARK 3 T TENSOR REMARK 3 T11: 0.2166 T22: 0.2587 REMARK 3 T33: 0.4394 T12: 0.0356 REMARK 3 T13: 0.0319 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.5966 L22: 3.9207 REMARK 3 L33: 6.0171 L12: 4.2450 REMARK 3 L13: 4.8154 L23: 4.4656 REMARK 3 S TENSOR REMARK 3 S11: -0.2206 S12: 0.1571 S13: 0.7655 REMARK 3 S21: 0.1457 S22: 0.1402 S23: 0.5419 REMARK 3 S31: -0.4252 S32: -0.0415 S33: 0.1322 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 21 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7134 -20.4839 -36.8694 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.2612 REMARK 3 T33: 0.3690 T12: 0.0311 REMARK 3 T13: -0.0129 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 0.3435 L22: 2.7370 REMARK 3 L33: 2.4767 L12: -0.2214 REMARK 3 L13: 0.3700 L23: -0.1004 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: 0.1018 S13: 0.0476 REMARK 3 S21: 0.0375 S22: 0.1025 S23: -0.1302 REMARK 3 S31: -0.0006 S32: -0.0216 S33: -0.0156 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 402 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3436 -10.8187 -16.2794 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.2949 REMARK 3 T33: 0.3470 T12: -0.0148 REMARK 3 T13: 0.0184 T23: -0.0696 REMARK 3 L TENSOR REMARK 3 L11: 2.0261 L22: 1.3684 REMARK 3 L33: 3.7900 L12: 0.4656 REMARK 3 L13: 0.6972 L23: -0.2150 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: -0.2948 S13: 0.0106 REMARK 3 S21: 0.1140 S22: 0.0234 S23: 0.1511 REMARK 3 S31: -0.1302 S32: -0.1193 S33: -0.1036 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 522 THROUGH 546 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7360 -18.7557 -15.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.3279 T22: 0.3935 REMARK 3 T33: 0.5408 T12: -0.0822 REMARK 3 T13: 0.0688 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 7.1218 L22: 5.3066 REMARK 3 L33: 5.3014 L12: -4.5308 REMARK 3 L13: -4.2614 L23: 4.8942 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: -0.1109 S13: 0.3907 REMARK 3 S21: 0.5382 S22: 0.2683 S23: 0.3620 REMARK 3 S31: 0.8420 S32: -0.8782 S33: -0.0354 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00005 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26342 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WKQ AND A HOMOLOGY MODEL BASED ON 1Q2N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 4.0, 1.0 M REMARK 280 LITHIUM CHLORIDE, 18% (W/V) PEG 6000, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.12000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.12000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 VAL B 1 REMARK 465 ASP B 2 REMARK 465 LYS B 58 REMARK 465 GLY D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 VAL D 1 REMARK 465 ASP D 2 REMARK 465 LYS D 58 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 421 O HOH A 701 2.12 REMARK 500 NH1 ARG C 421 O HOH C 701 2.14 REMARK 500 O HIS C 519 NH1 ARG C 521 2.18 REMARK 500 OE1 GLN A 502 O HOH A 702 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 5 58.78 -99.74 REMARK 500 ASP A 522 -130.84 53.52 REMARK 500 PHE D 5 59.32 -100.93 REMARK 500 ASP C 522 -130.31 52.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 603 DBREF 5DJU B -2 58 PDB 5DJU 5DJU -2 58 DBREF 5DJU A 404 546 UNP O49004 O49004_AVESA 407 549 DBREF 5DJU D -2 58 PDB 5DJU 5DJU -2 58 DBREF 5DJU C 404 546 UNP O49004 O49004_AVESA 407 549 SEQADV 5DJU GLY A 402 UNP O49004 EXPRESSION TAG SEQADV 5DJU SER A 403 UNP O49004 EXPRESSION TAG SEQADV 5DJU ALA A 450 UNP O49004 CYS 453 ENGINEERED MUTATION SEQADV 5DJU GLY C 402 UNP O49004 EXPRESSION TAG SEQADV 5DJU SER C 403 UNP O49004 EXPRESSION TAG SEQADV 5DJU ALA C 450 UNP O49004 CYS 453 ENGINEERED MUTATION SEQRES 1 B 61 GLY GLY SER VAL ASP ASN LYS PHE ASN LYS GLU VAL LEU SEQRES 2 B 61 VAL ALA ARG GLN GLU ILE TYR TRP LEU PRO ASN LEU ASN SEQRES 3 B 61 TRP GLU GLN LYS PHE ALA PHE ILE SER SER LEU THR ASN SEQRES 4 B 61 ASP PRO SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS SEQRES 5 B 61 LYS LEU ASN GLY ALA GLN PRO PRO LYS SEQRES 1 A 145 GLY SER LEU ALA THR THR LEU GLU ARG ILE GLU LYS ASN SEQRES 2 A 145 PHE VAL ILE THR ASP PRO ARG LEU PRO ASP ASN PRO ILE SEQRES 3 A 145 ILE PHE ALA SER ASP SER PHE LEU GLN LEU THR GLU TYR SEQRES 4 A 145 SER ARG GLU GLU ILE LEU GLY ARG ASN ALA ARG PHE LEU SEQRES 5 A 145 GLN GLY PRO GLU THR ASP ARG ALA THR VAL ARG LYS ILE SEQRES 6 A 145 ARG ASP ALA ILE ASP ASN GLN THR GLU VAL THR VAL GLN SEQRES 7 A 145 LEU ILE ASN TYR THR LYS SER GLY LYS LYS PHE TRP ASN SEQRES 8 A 145 LEU PHE HIS LEU GLN PRO MET ARG ASP GLN LYS GLY ASP SEQRES 9 A 145 VAL GLN TYR PHE ILE GLY VAL GLN LEU ASP GLY THR GLU SEQRES 10 A 145 HIS VAL ARG ASP ALA ALA GLU ARG GLU GLY VAL MET LEU SEQRES 11 A 145 ILE LYS LYS THR ALA GLU ASN ILE ASP GLU ALA ALA LYS SEQRES 12 A 145 GLU LEU SEQRES 1 D 61 GLY GLY SER VAL ASP ASN LYS PHE ASN LYS GLU VAL LEU SEQRES 2 D 61 VAL ALA ARG GLN GLU ILE TYR TRP LEU PRO ASN LEU ASN SEQRES 3 D 61 TRP GLU GLN LYS PHE ALA PHE ILE SER SER LEU THR ASN SEQRES 4 D 61 ASP PRO SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS SEQRES 5 D 61 LYS LEU ASN GLY ALA GLN PRO PRO LYS SEQRES 1 C 145 GLY SER LEU ALA THR THR LEU GLU ARG ILE GLU LYS ASN SEQRES 2 C 145 PHE VAL ILE THR ASP PRO ARG LEU PRO ASP ASN PRO ILE SEQRES 3 C 145 ILE PHE ALA SER ASP SER PHE LEU GLN LEU THR GLU TYR SEQRES 4 C 145 SER ARG GLU GLU ILE LEU GLY ARG ASN ALA ARG PHE LEU SEQRES 5 C 145 GLN GLY PRO GLU THR ASP ARG ALA THR VAL ARG LYS ILE SEQRES 6 C 145 ARG ASP ALA ILE ASP ASN GLN THR GLU VAL THR VAL GLN SEQRES 7 C 145 LEU ILE ASN TYR THR LYS SER GLY LYS LYS PHE TRP ASN SEQRES 8 C 145 LEU PHE HIS LEU GLN PRO MET ARG ASP GLN LYS GLY ASP SEQRES 9 C 145 VAL GLN TYR PHE ILE GLY VAL GLN LEU ASP GLY THR GLU SEQRES 10 C 145 HIS VAL ARG ASP ALA ALA GLU ARG GLU GLY VAL MET LEU SEQRES 11 C 145 ILE LYS LYS THR ALA GLU ASN ILE ASP GLU ALA ALA LYS SEQRES 12 C 145 GLU LEU HET FMN A 601 31 HET CL A 602 1 HET CL A 603 1 HET CL A 604 1 HET FMN C 601 31 HET CL C 602 1 HET CL C 603 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM CL CHLORIDE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 5 FMN 2(C17 H21 N4 O9 P) FORMUL 6 CL 5(CL 1-) FORMUL 12 HOH *219(H2 O) HELIX 1 AA1 ASN B 6 TRP B 18 1 13 HELIX 2 AA2 ASN B 23 ASP B 37 1 15 HELIX 3 AA3 GLN B 40 ALA B 54 1 15 HELIX 4 AA4 THR A 406 ILE A 411 5 6 HELIX 5 AA5 SER A 431 GLU A 439 1 9 HELIX 6 AA6 SER A 441 LEU A 446 1 6 HELIX 7 AA7 ASN A 449 GLN A 454 5 6 HELIX 8 AA8 ASP A 459 GLN A 473 1 15 HELIX 9 AA9 ARG A 521 LEU A 546 1 26 HELIX 10 AB1 ASN D 6 TRP D 18 1 13 HELIX 11 AB2 ASN D 23 ASP D 37 1 15 HELIX 12 AB3 GLN D 40 GLN D 55 1 16 HELIX 13 AB4 THR C 406 ILE C 411 5 6 HELIX 14 AB5 SER C 431 GLU C 439 1 9 HELIX 15 AB6 SER C 441 ILE C 445 5 5 HELIX 16 AB7 ASN C 449 GLN C 454 5 6 HELIX 17 AB8 ASP C 459 GLN C 473 1 15 HELIX 18 AB9 ARG C 521 LEU C 546 1 26 SHEET 1 AA1 5 ILE A 427 ALA A 430 0 SHEET 2 AA1 5 PHE A 415 THR A 418 -1 N ILE A 417 O ILE A 428 SHEET 3 AA1 5 VAL A 506 GLY A 516 -1 O GLY A 511 N VAL A 416 SHEET 4 AA1 5 LYS A 489 ARG A 500 -1 N MET A 499 O GLN A 507 SHEET 5 AA1 5 VAL A 476 TYR A 483 -1 N LEU A 480 O ASN A 492 SHEET 1 AA2 5 ILE C 427 ALA C 430 0 SHEET 2 AA2 5 ASN C 414 THR C 418 -1 N ILE C 417 O ILE C 428 SHEET 3 AA2 5 VAL C 506 GLY C 516 -1 O GLY C 511 N VAL C 416 SHEET 4 AA2 5 LYS C 489 ARG C 500 -1 N HIS C 495 O VAL C 512 SHEET 5 AA2 5 VAL C 476 TYR C 483 -1 N LEU C 480 O ASN C 492 SITE 1 AC1 24 VAL A 416 THR A 418 ASN A 425 ASN A 449 SITE 2 AC1 24 ALA A 450 ARG A 451 LEU A 453 GLN A 454 SITE 3 AC1 24 VAL A 463 ARG A 467 ILE A 470 LEU A 480 SITE 4 AC1 24 ASN A 482 ASN A 492 PHE A 494 PHE A 509 SITE 5 AC1 24 GLY A 511 GLN A 513 CL A 603 HOH A 714 SITE 6 AC1 24 HOH A 724 HOH A 730 FMN C 601 HOH C 712 SITE 1 AC2 3 TRP B 18 THR A 407 ARG A 410 SITE 1 AC3 3 ASN A 425 ASN A 449 FMN A 601 SITE 1 AC4 2 ARG A 410 GLU D 25 SITE 1 AC5 27 ARG A 451 FMN A 601 VAL C 416 THR C 418 SITE 2 AC5 27 ASN C 425 ASN C 449 ALA C 450 ARG C 451 SITE 3 AC5 27 LEU C 453 GLN C 454 VAL C 463 ILE C 466 SITE 4 AC5 27 ARG C 467 ILE C 470 LEU C 480 ASN C 482 SITE 5 AC5 27 ASN C 492 PHE C 494 PHE C 509 GLY C 511 SITE 6 AC5 27 GLN C 513 CL C 603 HOH C 712 HOH C 715 SITE 7 AC5 27 HOH C 719 HOH C 732 HOH C 740 SITE 1 AC6 6 HOH B 121 GLN D 14 TRP D 18 ALA C 405 SITE 2 AC6 6 THR C 407 ARG C 410 SITE 1 AC7 4 ASN C 425 ASN C 449 FMN C 601 HOH C 732 CRYST1 74.240 74.500 81.910 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013470 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012209 0.00000