HEADER TRANSFERASE 20-AUG-15 5DAS TITLE STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS NADD IN COMPLEX WITH NADP, TITLE 2 P21212, FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: B, C, D, A; COMPND 4 FRAGMENT: RESIDUES 1-192; COMPND 5 SYNONYM: DEAMIDO-NAD(+) DIPHOSPHORYLASE,DEAMIDO-NAD(+) COMPND 6 PYROPHOSPHORYLASE,NICOTINATE MONONUCLEOTIDE ADENYLYLTRANSFERASE,NAMN COMPND 7 ADENYLYLTRANSFERASE; COMPND 8 EC: 2.7.7.18; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: NADD, RV2421C, MTCY428.26; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSF-NT KEYWDS ROSSMAN FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.V.KOROTKOV REVDAT 4 27-SEP-23 5DAS 1 REMARK REVDAT 3 11-DEC-19 5DAS 1 REMARK REVDAT 2 20-SEP-17 5DAS 1 REMARK REVDAT 1 24-AUG-16 5DAS 0 JRNL AUTH K.V.KOROTKOV JRNL TITL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS NADD IN COMPLEX WITH JRNL TITL 2 NADP, P21212 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2335 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.3770 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.244 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.081 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5950 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5498 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8124 ; 1.367 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12606 ; 0.929 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 712 ; 5.776 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;29.536 ;22.305 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 898 ;12.377 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;13.060 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6972 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1385 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2881 ; 1.659 ; 2.555 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2880 ; 1.655 ; 2.554 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3579 ; 2.765 ; 3.802 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5DAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : XSCALE NOVEMBER 3, 2014 REMARK 200 BUILT=20141118 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46782 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 65.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.20900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.98100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4S1O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.6, 20% REMARK 280 ISOPROPANOL, 20% PEG4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.91000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP B 45 REMARK 465 GLN B 46 REMARK 465 LYS B 47 REMARK 465 GLY B 48 REMARK 465 ARG B 49 REMARK 465 GLN B 50 REMARK 465 TRP B 117 REMARK 465 GLN B 118 REMARK 465 GLY B 119 REMARK 465 TRP B 120 REMARK 465 TYR B 137 REMARK 465 GLU B 138 REMARK 465 LEU B 139 REMARK 465 ARG B 140 REMARK 465 ASN B 141 REMARK 465 GLU B 142 REMARK 465 HIS B 143 REMARK 465 ILE B 144 REMARK 465 THR B 145 REMARK 465 SER B 146 REMARK 465 LEU B 147 REMARK 465 LEU B 148 REMARK 465 GLY B 149 REMARK 465 GLN B 150 REMARK 465 LEU B 151 REMARK 465 ALA B 152 REMARK 465 LYS B 153 REMARK 465 ASP B 154 REMARK 465 GLN C 118 REMARK 465 GLY C 119 REMARK 465 TRP C 120 REMARK 465 TYR C 137 REMARK 465 GLU C 138 REMARK 465 LEU C 139 REMARK 465 ARG C 140 REMARK 465 ASN C 141 REMARK 465 GLU C 142 REMARK 465 HIS C 143 REMARK 465 ILE C 144 REMARK 465 THR C 145 REMARK 465 SER C 146 REMARK 465 LEU C 147 REMARK 465 LEU C 148 REMARK 465 GLY C 149 REMARK 465 GLN C 150 REMARK 465 LEU C 151 REMARK 465 ALA C 152 REMARK 465 LYS C 153 REMARK 465 ASP C 154 REMARK 465 TRP D 45 REMARK 465 GLN D 46 REMARK 465 LYS D 47 REMARK 465 GLY D 48 REMARK 465 ARG D 49 REMARK 465 GLN D 50 REMARK 465 TRP D 117 REMARK 465 GLN D 118 REMARK 465 GLY D 119 REMARK 465 TRP D 120 REMARK 465 GLY D 136 REMARK 465 TYR D 137 REMARK 465 GLU D 138 REMARK 465 LEU D 139 REMARK 465 ARG D 140 REMARK 465 ASN D 141 REMARK 465 GLU D 142 REMARK 465 HIS D 143 REMARK 465 ILE D 144 REMARK 465 THR D 145 REMARK 465 SER D 146 REMARK 465 LEU D 147 REMARK 465 LEU D 148 REMARK 465 GLY D 149 REMARK 465 GLN D 150 REMARK 465 LEU D 151 REMARK 465 ALA D 152 REMARK 465 LYS D 153 REMARK 465 ASP D 154 REMARK 465 GLN A 46 REMARK 465 LYS A 47 REMARK 465 GLY A 48 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 183 -2.31 73.78 REMARK 500 PHE D 13 60.14 61.64 REMARK 500 ILE D 114 -48.27 -27.43 REMARK 500 ASN A 141 108.80 -160.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S1O RELATED DB: PDB REMARK 900 M. TUBERCULOSIS NADD IN COMPLEX WITH NADP, SPACE GROUP P3121 REMARK 900 RELATED ID: 4YBR RELATED DB: PDB REMARK 900 M. TUBERCULOSIS NADD IN COMPLEX WITH NADP, SPACE GROUP P21212, FORM REMARK 900 1 REMARK 900 RELATED ID: 4YMI RELATED DB: PDB REMARK 900 M. ABSCESSUS NADD IN COMPLEX WITH NADP REMARK 900 RELATED ID: 4X0E RELATED DB: PDB REMARK 900 M. TUBERCULOSIS NADD IN APO FORM REMARK 900 RELATED ID: 4RPI RELATED DB: PDB REMARK 900 M. TUBERCULOSIS NADD W117A MUTANT IN APO FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE SEQUENCE IS MIS-ANNOTATED IN THE REMARK 999 DATABASES. THE CORRECT START SEQUENCE IS MHGRRLGVM WHICH WAS REMARK 999 CONFIRMED EXPERIMENTALLY. DBREF 5DAS B 9 200 UNP P9WJJ5 NADD_MYCTU 1 192 DBREF 5DAS C 9 200 UNP P9WJJ5 NADD_MYCTU 1 192 DBREF 5DAS D 9 200 UNP P9WJJ5 NADD_MYCTU 1 192 DBREF 5DAS A 9 200 UNP P9WJJ5 NADD_MYCTU 1 192 SEQADV 5DAS GLY B 0 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS ALA B 1 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS MET B 2 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS GLY B 3 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS ARG B 4 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS ARG B 5 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS LEU B 6 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS GLY B 7 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS VAL B 8 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS ARG B 196 UNP P9WJJ5 CYS 188 ENGINEERED MUTATION SEQADV 5DAS THR B 200 UNP P9WJJ5 CYS 192 ENGINEERED MUTATION SEQADV 5DAS GLY C 0 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS ALA C 1 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS MET C 2 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS GLY C 3 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS ARG C 4 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS ARG C 5 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS LEU C 6 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS GLY C 7 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS VAL C 8 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS ARG C 196 UNP P9WJJ5 CYS 188 ENGINEERED MUTATION SEQADV 5DAS THR C 200 UNP P9WJJ5 CYS 192 ENGINEERED MUTATION SEQADV 5DAS GLY D 0 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS ALA D 1 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS MET D 2 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS GLY D 3 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS ARG D 4 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS ARG D 5 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS LEU D 6 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS GLY D 7 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS VAL D 8 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS ARG D 196 UNP P9WJJ5 CYS 188 ENGINEERED MUTATION SEQADV 5DAS THR D 200 UNP P9WJJ5 CYS 192 ENGINEERED MUTATION SEQADV 5DAS GLY A 0 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS ALA A 1 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS MET A 2 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS GLY A 3 UNP P9WJJ5 EXPRESSION TAG SEQADV 5DAS ARG A 4 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS ARG A 5 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS LEU A 6 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS GLY A 7 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS VAL A 8 UNP P9WJJ5 SEE REMARK 999 SEQADV 5DAS ARG A 196 UNP P9WJJ5 CYS 188 ENGINEERED MUTATION SEQADV 5DAS THR A 200 UNP P9WJJ5 CYS 192 ENGINEERED MUTATION SEQRES 1 B 201 GLY ALA MET GLY ARG ARG LEU GLY VAL MET GLY GLY THR SEQRES 2 B 201 PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL ALA ALA SER SEQRES 3 B 201 GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU VAL VAL PHE SEQRES 4 B 201 VAL PRO SER GLY GLN PRO TRP GLN LYS GLY ARG GLN VAL SEQRES 5 B 201 SER ALA ALA GLU HIS ARG TYR LEU MET THR VAL ILE ALA SEQRES 6 B 201 THR ALA SER ASN PRO ARG PHE SER VAL SER ARG VAL ASP SEQRES 7 B 201 ILE ASP ARG GLY GLY PRO THR TYR THR LYS ASP THR LEU SEQRES 8 B 201 ALA ASP LEU HIS ALA LEU HIS PRO ASP SER GLU LEU TYR SEQRES 9 B 201 PHE THR THR GLY ALA ASP ALA LEU ALA SER ILE MET SER SEQRES 10 B 201 TRP GLN GLY TRP GLU GLU LEU PHE GLU LEU ALA ARG PHE SEQRES 11 B 201 VAL GLY VAL SER ARG PRO GLY TYR GLU LEU ARG ASN GLU SEQRES 12 B 201 HIS ILE THR SER LEU LEU GLY GLN LEU ALA LYS ASP ALA SEQRES 13 B 201 LEU THR LEU VAL GLU ILE PRO ALA LEU ALA ILE SER SER SEQRES 14 B 201 THR ASP CYS ARG GLN ARG ALA GLU GLN SER ARG PRO LEU SEQRES 15 B 201 TRP TYR LEU MET PRO ASP GLY VAL VAL GLN TYR VAL SER SEQRES 16 B 201 LYS ARG ARG LEU TYR THR SEQRES 1 C 201 GLY ALA MET GLY ARG ARG LEU GLY VAL MET GLY GLY THR SEQRES 2 C 201 PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL ALA ALA SER SEQRES 3 C 201 GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU VAL VAL PHE SEQRES 4 C 201 VAL PRO SER GLY GLN PRO TRP GLN LYS GLY ARG GLN VAL SEQRES 5 C 201 SER ALA ALA GLU HIS ARG TYR LEU MET THR VAL ILE ALA SEQRES 6 C 201 THR ALA SER ASN PRO ARG PHE SER VAL SER ARG VAL ASP SEQRES 7 C 201 ILE ASP ARG GLY GLY PRO THR TYR THR LYS ASP THR LEU SEQRES 8 C 201 ALA ASP LEU HIS ALA LEU HIS PRO ASP SER GLU LEU TYR SEQRES 9 C 201 PHE THR THR GLY ALA ASP ALA LEU ALA SER ILE MET SER SEQRES 10 C 201 TRP GLN GLY TRP GLU GLU LEU PHE GLU LEU ALA ARG PHE SEQRES 11 C 201 VAL GLY VAL SER ARG PRO GLY TYR GLU LEU ARG ASN GLU SEQRES 12 C 201 HIS ILE THR SER LEU LEU GLY GLN LEU ALA LYS ASP ALA SEQRES 13 C 201 LEU THR LEU VAL GLU ILE PRO ALA LEU ALA ILE SER SER SEQRES 14 C 201 THR ASP CYS ARG GLN ARG ALA GLU GLN SER ARG PRO LEU SEQRES 15 C 201 TRP TYR LEU MET PRO ASP GLY VAL VAL GLN TYR VAL SER SEQRES 16 C 201 LYS ARG ARG LEU TYR THR SEQRES 1 D 201 GLY ALA MET GLY ARG ARG LEU GLY VAL MET GLY GLY THR SEQRES 2 D 201 PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL ALA ALA SER SEQRES 3 D 201 GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU VAL VAL PHE SEQRES 4 D 201 VAL PRO SER GLY GLN PRO TRP GLN LYS GLY ARG GLN VAL SEQRES 5 D 201 SER ALA ALA GLU HIS ARG TYR LEU MET THR VAL ILE ALA SEQRES 6 D 201 THR ALA SER ASN PRO ARG PHE SER VAL SER ARG VAL ASP SEQRES 7 D 201 ILE ASP ARG GLY GLY PRO THR TYR THR LYS ASP THR LEU SEQRES 8 D 201 ALA ASP LEU HIS ALA LEU HIS PRO ASP SER GLU LEU TYR SEQRES 9 D 201 PHE THR THR GLY ALA ASP ALA LEU ALA SER ILE MET SER SEQRES 10 D 201 TRP GLN GLY TRP GLU GLU LEU PHE GLU LEU ALA ARG PHE SEQRES 11 D 201 VAL GLY VAL SER ARG PRO GLY TYR GLU LEU ARG ASN GLU SEQRES 12 D 201 HIS ILE THR SER LEU LEU GLY GLN LEU ALA LYS ASP ALA SEQRES 13 D 201 LEU THR LEU VAL GLU ILE PRO ALA LEU ALA ILE SER SER SEQRES 14 D 201 THR ASP CYS ARG GLN ARG ALA GLU GLN SER ARG PRO LEU SEQRES 15 D 201 TRP TYR LEU MET PRO ASP GLY VAL VAL GLN TYR VAL SER SEQRES 16 D 201 LYS ARG ARG LEU TYR THR SEQRES 1 A 201 GLY ALA MET GLY ARG ARG LEU GLY VAL MET GLY GLY THR SEQRES 2 A 201 PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL ALA ALA SER SEQRES 3 A 201 GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU VAL VAL PHE SEQRES 4 A 201 VAL PRO SER GLY GLN PRO TRP GLN LYS GLY ARG GLN VAL SEQRES 5 A 201 SER ALA ALA GLU HIS ARG TYR LEU MET THR VAL ILE ALA SEQRES 6 A 201 THR ALA SER ASN PRO ARG PHE SER VAL SER ARG VAL ASP SEQRES 7 A 201 ILE ASP ARG GLY GLY PRO THR TYR THR LYS ASP THR LEU SEQRES 8 A 201 ALA ASP LEU HIS ALA LEU HIS PRO ASP SER GLU LEU TYR SEQRES 9 A 201 PHE THR THR GLY ALA ASP ALA LEU ALA SER ILE MET SER SEQRES 10 A 201 TRP GLN GLY TRP GLU GLU LEU PHE GLU LEU ALA ARG PHE SEQRES 11 A 201 VAL GLY VAL SER ARG PRO GLY TYR GLU LEU ARG ASN GLU SEQRES 12 A 201 HIS ILE THR SER LEU LEU GLY GLN LEU ALA LYS ASP ALA SEQRES 13 A 201 LEU THR LEU VAL GLU ILE PRO ALA LEU ALA ILE SER SER SEQRES 14 A 201 THR ASP CYS ARG GLN ARG ALA GLU GLN SER ARG PRO LEU SEQRES 15 A 201 TRP TYR LEU MET PRO ASP GLY VAL VAL GLN TYR VAL SER SEQRES 16 A 201 LYS ARG ARG LEU TYR THR HET NAP B 301 48 HET NAP C 301 48 HET NAP D 301 48 HET NAP A 301 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 5 NAP 4(C21 H28 N7 O17 P3) FORMUL 9 HOH *400(H2 O) HELIX 1 AA1 HIS B 17 PHE B 31 1 15 HELIX 2 AA2 ALA B 53 ALA B 66 1 14 HELIX 3 AA3 ARG B 75 GLY B 81 1 7 HELIX 4 AA4 TYR B 85 HIS B 97 1 13 HELIX 5 AA5 ALA B 108 MET B 115 1 8 HELIX 6 AA6 GLU B 122 ALA B 127 1 6 HELIX 7 AA7 PRO B 162 ILE B 166 5 5 HELIX 8 AA8 SER B 167 GLN B 177 1 11 HELIX 9 AA9 PRO B 186 ARG B 196 1 11 HELIX 10 AB1 HIS C 17 ASP C 32 1 16 HELIX 11 AB2 ALA C 53 ALA C 66 1 14 HELIX 12 AB3 TYR C 85 HIS C 97 1 13 HELIX 13 AB4 ALA C 108 SER C 116 1 9 HELIX 14 AB5 PRO C 162 ILE C 166 5 5 HELIX 15 AB6 SER C 167 GLN C 177 1 11 HELIX 16 AB7 PRO C 186 ARG C 196 1 11 HELIX 17 AB8 HIS D 17 PHE D 31 1 15 HELIX 18 AB9 ALA D 53 ALA D 66 1 14 HELIX 19 AC1 ARG D 75 GLY D 81 1 7 HELIX 20 AC2 TYR D 85 HIS D 97 1 13 HELIX 21 AC3 ALA D 108 MET D 115 1 8 HELIX 22 AC4 GLU D 122 ALA D 127 1 6 HELIX 23 AC5 PRO D 162 ILE D 166 5 5 HELIX 24 AC6 SER D 167 GLN D 177 1 11 HELIX 25 AC7 PRO D 186 ARG D 196 1 11 HELIX 26 AC8 HIS A 17 PHE A 31 1 15 HELIX 27 AC9 ALA A 53 ALA A 66 1 14 HELIX 28 AD1 ARG A 75 GLY A 81 1 7 HELIX 29 AD2 TYR A 85 HIS A 97 1 13 HELIX 30 AD3 ALA A 108 TRP A 117 1 10 HELIX 31 AD4 GLY A 119 PHE A 124 1 6 HELIX 32 AD5 ASN A 141 LEU A 151 1 11 HELIX 33 AD6 PRO A 162 ILE A 166 5 5 HELIX 34 AD7 SER A 167 GLN A 177 1 11 HELIX 35 AD8 PRO A 186 ARG A 196 1 11 SHEET 1 AA1 6 PHE B 71 VAL B 73 0 SHEET 2 AA1 6 GLU B 35 PRO B 40 1 N PHE B 38 O SER B 72 SHEET 3 AA1 6 ARG B 5 GLY B 11 1 N MET B 9 O VAL B 39 SHEET 4 AA1 6 GLU B 101 GLY B 107 1 O THR B 105 N VAL B 8 SHEET 5 AA1 6 ARG B 128 SER B 133 1 O VAL B 130 N PHE B 104 SHEET 6 AA1 6 LEU B 156 GLU B 160 1 O THR B 157 N GLY B 131 SHEET 1 AA2 6 PHE C 71 VAL C 73 0 SHEET 2 AA2 6 GLU C 35 PRO C 40 1 N PHE C 38 O SER C 72 SHEET 3 AA2 6 ARG C 5 GLY C 11 1 N MET C 9 O VAL C 39 SHEET 4 AA2 6 GLU C 101 GLY C 107 1 O THR C 105 N VAL C 8 SHEET 5 AA2 6 ARG C 128 SER C 133 1 O ARG C 128 N PHE C 104 SHEET 6 AA2 6 LEU C 156 GLU C 160 1 O VAL C 159 N GLY C 131 SHEET 1 AA3 6 PHE D 71 VAL D 73 0 SHEET 2 AA3 6 GLU D 35 PRO D 40 1 N PHE D 38 O SER D 72 SHEET 3 AA3 6 ARG D 5 GLY D 11 1 N GLY D 7 O GLU D 35 SHEET 4 AA3 6 GLU D 101 GLY D 107 1 O THR D 105 N VAL D 8 SHEET 5 AA3 6 ARG D 128 SER D 133 1 O VAL D 130 N PHE D 104 SHEET 6 AA3 6 LEU D 156 GLU D 160 1 O VAL D 159 N GLY D 131 SHEET 1 AA4 6 PHE A 71 VAL A 73 0 SHEET 2 AA4 6 GLU A 35 PRO A 40 1 N PHE A 38 O SER A 72 SHEET 3 AA4 6 ARG A 5 GLY A 11 1 N GLY A 7 O GLU A 35 SHEET 4 AA4 6 GLU A 101 GLY A 107 1 O THR A 105 N VAL A 8 SHEET 5 AA4 6 ARG A 128 SER A 133 1 O VAL A 132 N THR A 106 SHEET 6 AA4 6 LEU A 156 GLU A 160 1 O THR A 157 N GLY A 131 CISPEP 1 ASP B 14 PRO B 15 0 1.41 CISPEP 2 ASP C 14 PRO C 15 0 2.73 CISPEP 3 ASP D 14 PRO D 15 0 -2.07 CISPEP 4 ASP A 14 PRO A 15 0 0.47 SITE 1 AC1 23 MET B 9 GLY B 10 GLY B 11 THR B 12 SITE 2 AC1 23 HIS B 17 HIS B 20 THR B 84 TYR B 85 SITE 3 AC1 23 THR B 86 PHE B 104 THR B 106 GLY B 107 SITE 4 AC1 23 ILE B 114 VAL B 132 SER B 167 SER B 168 SITE 5 AC1 23 HOH B 402 HOH B 403 HOH B 413 HOH B 429 SITE 6 AC1 23 HOH B 436 HOH B 447 HOH B 471 SITE 1 AC2 31 MET C 9 GLY C 10 GLY C 11 THR C 12 SITE 2 AC2 31 PHE C 13 HIS C 17 HIS C 20 SER C 41 SITE 3 AC2 31 TRP C 45 ARG C 49 THR C 84 TYR C 85 SITE 4 AC2 31 THR C 86 PHE C 104 THR C 106 GLY C 107 SITE 5 AC2 31 ALA C 110 ILE C 114 VAL C 132 ARG C 134 SITE 6 AC2 31 SER C 167 SER C 168 HOH C 406 HOH C 410 SITE 7 AC2 31 HOH C 412 HOH C 413 HOH C 447 HOH C 450 SITE 8 AC2 31 HOH C 452 HOH C 470 HOH C 471 SITE 1 AC3 22 MET D 9 GLY D 10 GLY D 11 THR D 12 SITE 2 AC3 22 HIS D 17 HIS D 20 THR D 84 TYR D 85 SITE 3 AC3 22 THR D 86 THR D 106 GLY D 107 ILE D 114 SITE 4 AC3 22 VAL D 132 ARG D 134 SER D 167 SER D 168 SITE 5 AC3 22 HOH D 404 HOH D 412 HOH D 418 HOH D 419 SITE 6 AC3 22 HOH D 428 HOH D 430 SITE 1 AC4 36 MET A 9 GLY A 10 GLY A 11 THR A 12 SITE 2 AC4 36 HIS A 17 HIS A 20 SER A 41 TRP A 45 SITE 3 AC4 36 ARG A 49 THR A 84 THR A 86 PHE A 104 SITE 4 AC4 36 THR A 106 GLY A 107 ALA A 110 ILE A 114 SITE 5 AC4 36 TRP A 117 VAL A 132 ARG A 134 SER A 167 SITE 6 AC4 36 SER A 168 HOH A 406 HOH A 412 HOH A 416 SITE 7 AC4 36 HOH A 434 HOH A 436 HOH A 445 HOH A 460 SITE 8 AC4 36 HOH A 470 HOH A 472 HOH A 479 HOH A 487 SITE 9 AC4 36 HOH A 492 HOH A 508 HOH A 513 HOH A 515 CRYST1 117.820 156.130 48.950 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008488 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020429 0.00000