HEADER TRANSFERASE 23-MAR-15 4YYC TITLE CRYSTAL STRUCTURE OF TRIMETHYLAMINE METHYLTRANSFERASE FROM TITLE 2 SINORHIZOBIUM MELILOTI IN COMPLEX WITH UNKNOWN LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRIMETHYLAMINE METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: MTTB, R01976, SMC04330; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, KEYWDS 2 TRIMETHYLAMINE METHYLTRANSFERASE, UNKNOWN LIGAND, PSI-BIOLOGY, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.G.SHABALIN,P.J.POREBSKI,O.A.GASIOROWSKA,K.B.HANDING, AUTHOR 2 E.NIEDZIALKOWSKA,M.T.CYMBOROWSKI,D.R.COOPER,M.STEAD,J.HAMMONDS, AUTHOR 3 M.AHMED,J.BONANNO,R.SEIDEL,S.C.ALMO,W.MINOR,NEW YORK STRUCTURAL AUTHOR 4 GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 6 13-APR-22 4YYC 1 AUTHOR JRNL REVDAT 5 04-DEC-19 4YYC 1 REMARK REVDAT 4 27-SEP-17 4YYC 1 JRNL REMARK REVDAT 3 01-JUN-16 4YYC 1 JRNL REVDAT 2 30-MAR-16 4YYC 1 REMARK REVDAT 1 08-APR-15 4YYC 0 JRNL AUTH E.NIEDZIALKOWSKA,O.GASIOROWSKA,K.B.HANDING,K.A.MAJOREK, JRNL AUTH 2 P.J.POREBSKI,I.G.SHABALIN,E.ZASADZINSKA,M.CYMBOROWSKI, JRNL AUTH 3 W.MINOR JRNL TITL PROTEIN PURIFICATION AND CRYSTALLIZATION ARTIFACTS: THE TALE JRNL TITL 2 USUALLY NOT TOLD. JRNL REF PROTEIN SCI. V. 25 720 2016 JRNL REFN ESSN 1469-896X JRNL PMID 26660914 JRNL DOI 10.1002/PRO.2861 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 64442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3363 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3651 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 525 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.767 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3843 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3637 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5231 ; 1.563 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8361 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.230 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;33.937 ;23.575 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;11.922 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.396 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4465 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 901 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1945 ; 0.625 ; 1.077 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1943 ; 0.623 ; 1.075 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2434 ; 1.036 ; 1.610 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9000 0.4000 35.1010 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.1875 REMARK 3 T33: 0.0304 T12: -0.0285 REMARK 3 T13: 0.0034 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.1171 L22: 0.7038 REMARK 3 L33: 0.6145 L12: -0.1572 REMARK 3 L13: 0.0839 L23: 0.0287 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: -0.3136 S13: -0.0134 REMARK 3 S21: 0.0658 S22: -0.0004 S23: -0.0147 REMARK 3 S31: 0.0108 S32: 0.0630 S33: -0.0280 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4130 6.0550 20.4740 REMARK 3 T TENSOR REMARK 3 T11: 0.0569 T22: 0.1171 REMARK 3 T33: 0.0494 T12: -0.0250 REMARK 3 T13: 0.0114 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.7788 L22: 0.2727 REMARK 3 L33: 0.6582 L12: -0.0322 REMARK 3 L13: 0.0828 L23: -0.1052 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: -0.0585 S13: 0.0690 REMARK 3 S21: -0.0179 S22: -0.0086 S23: -0.0459 REMARK 3 S31: -0.0171 S32: 0.1450 S33: -0.0183 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5830 -11.4890 19.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1139 REMARK 3 T33: 0.1238 T12: 0.0215 REMARK 3 T13: -0.0199 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 8.8537 L22: 0.1604 REMARK 3 L33: 8.5712 L12: -1.0725 REMARK 3 L13: 2.5468 L23: -0.1356 REMARK 3 S TENSOR REMARK 3 S11: 0.2243 S12: 0.6039 S13: -0.6340 REMARK 3 S21: 0.0262 S22: -0.0937 S23: 0.0987 REMARK 3 S31: 0.8401 S32: 0.2298 S33: -0.1306 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 444 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9510 5.9740 23.2240 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.0930 REMARK 3 T33: 0.0521 T12: -0.0115 REMARK 3 T13: 0.0042 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.7697 L22: 0.1873 REMARK 3 L33: 0.2319 L12: 0.0910 REMARK 3 L13: 0.0152 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.1103 S13: 0.1078 REMARK 3 S21: 0.0130 S22: -0.0203 S23: 0.0127 REMARK 3 S31: -0.0545 S32: 0.0078 S33: -0.0114 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 445 A 451 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4740 24.6480 23.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.7117 T22: 0.3843 REMARK 3 T33: 0.4662 T12: -0.2010 REMARK 3 T13: 0.0361 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 66.2534 L22: 6.7500 REMARK 3 L33: 42.0448 L12: 13.8945 REMARK 3 L13: 37.8930 L23: -0.8826 REMARK 3 S TENSOR REMARK 3 S11: -1.3913 S12: 1.7957 S13: 2.8592 REMARK 3 S21: 0.5983 S22: 0.2107 S23: 0.8006 REMARK 3 S31: -2.8728 S32: 1.5334 S33: 1.1806 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 459 A 521 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3560 15.7460 7.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.0991 T22: 0.0683 REMARK 3 T33: 0.0836 T12: -0.0131 REMARK 3 T13: 0.0133 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 3.2872 L22: 0.3128 REMARK 3 L33: 0.6101 L12: 0.7396 REMARK 3 L13: 0.8081 L23: 0.1501 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: 0.0912 S13: 0.2502 REMARK 3 S21: -0.0592 S22: -0.0152 S23: 0.0094 REMARK 3 S31: -0.1155 S32: 0.0711 S33: 0.0417 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4YYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07808 REMARK 200 MONOCHROMATOR : KOHZU REMARK 200 OPTICS : BIMORPH K-B PAIR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67995 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELX, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 14 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE AND REMARK 280 0.5 MM TCEP WERE MIXED WITH 0.2 UL OF THE MCSG-I CONDITION #33 REMARK 280 (32%W/V PEG 4K, 0.1M TRIS HCL, 0.8 M LITHIUM CHLORIDE, PH=8.5) REMARK 280 AND EQUILIBRATED AGAINST 1.5 M NACL SOLUTION IN 96 WELL 3 DROP REMARK 280 CRYSTALLIZATION PLATE (SWISSCI). BEFORE CRYSTALLIZATION PROTEIN REMARK 280 WAS MIXED WITH 1/15 V/V OF 1 MG/ML TEV PROTEASE SOLUTION, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.58100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.01250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.58100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.01250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 GLU A 20 REMARK 465 GLY A 21 REMARK 465 ARG A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ARG A 27 REMARK 465 ARG A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 ARG A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 GLN A 451 REMARK 465 ALA A 452 REMARK 465 ASN A 453 REMARK 465 PHE A 454 REMARK 465 GLN A 455 REMARK 465 SER A 456 REMARK 465 ALA A 457 REMARK 465 PHE A 458 REMARK 465 ALA A 522 REMARK 465 PHE A 523 REMARK 465 THR A 524 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 56 CD OE1 OE2 REMARK 470 LYS A 87 CD CE NZ REMARK 470 SER A 322 OG REMARK 470 MSE A 323 CG SE CE REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 GLU A 427 CD OE1 OE2 REMARK 470 GLU A 437 CG CD OE1 OE2 REMARK 470 ARG A 460 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 493 CD OE1 OE2 REMARK 470 GLU A 506 CD OE1 OE2 REMARK 470 LYS A 514 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 201 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 139 141.86 -35.29 REMARK 500 SER A 442 -155.62 -106.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1224 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1225 DISTANCE = 5.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-022189 RELATED DB: TARGETTRACK DBREF 4YYC A 1 524 UNP Q92P20 Q92P20_RHIME 1 524 SEQADV 4YYC SER A 0 UNP Q92P20 EXPRESSION TAG SEQRES 1 A 525 SER MSE SER ASP VAL THR GLU GLN GLY ALA ALA GLU GLY SEQRES 2 A 525 GLY GLY ARG ARG ALA ARG GLY GLU GLY ARG GLY ALA ALA SEQRES 3 A 525 ALA ARG ARG ALA SER ARG THR GLY GLY GLY PRO GLY PRO SEQRES 4 A 525 SER LEU PRO TYR ILE GLN ARG ARG ILE ARG GLU TYR GLU SEQRES 5 A 525 VAL LEU ASP GLU GLU GLY LEU GLN LEU ILE GLU ARG ASN SEQRES 6 A 525 ALA ASP VAL VAL LEU GLU GLU ILE GLY ILE GLU PHE ARG SEQRES 7 A 525 ASP ASP ALA GLU ALA LEU ASP LEU TRP LYS ALA ALA GLY SEQRES 8 A 525 ALA ASP VAL ARG GLY GLN ARG VAL HIS PHE PRO LYS GLY SEQRES 9 A 525 LEU CYS ARG GLU LEU LEU LYS THR ALA PRO LYS ASP PHE SEQRES 10 A 525 THR TRP HIS ALA ARG ASN PRO GLU ARG ASN ALA GLN ILE SEQRES 11 A 525 GLY GLY LYS ALA THR VAL PHE ALA PRO VAL TYR GLY PRO SEQRES 12 A 525 PRO PHE VAL ARG ASP LEU ASP GLY ASN ARG ARG TYR ALA SEQRES 13 A 525 THR ILE GLU ASP PHE ARG ASN PHE VAL LYS LEU ALA TYR SEQRES 14 A 525 MSE ALA PRO SER MSE HIS SER SER GLY GLY THR VAL CYS SEQRES 15 A 525 GLU PRO VAL ASP ILE ALA VAL ASN LYS ARG HIS LEU ASP SEQRES 16 A 525 MSE VAL TYR SER HIS ILE ARG TYR SER ASP LYS PRO PHE SEQRES 17 A 525 MSE GLY SER VAL THR ALA PRO GLU ARG ALA GLU ASP THR SEQRES 18 A 525 VAL ALA MSE ALA LYS ILE LEU PHE GLY ASP ASP PHE VAL SEQRES 19 A 525 GLU ASN ASN ALA VAL THR LEU ASN LEU ILE ASN ALA ASN SEQRES 20 A 525 SER PRO MSE VAL PHE ASP GLU THR MSE LEU GLY ALA ALA SEQRES 21 A 525 LYS VAL TYR ALA ARG HIS ASN GLN ALA CYS VAL VAL SER SEQRES 22 A 525 PRO PHE ILE LEU SER GLY ALA MSE SER PRO VAL THR VAL SEQRES 23 A 525 ALA GLY THR LEU THR GLN ILE LEU ALA GLU VAL LEU ALA SEQRES 24 A 525 GLY ALA ALA PHE THR GLN LEU ILE ARG LYS GLY ALA PRO SEQRES 25 A 525 VAL LEU PHE GLY THR PHE ALA ALA SER ILE SER MSE GLN SEQRES 26 A 525 SER GLY ALA PRO THR PHE GLY THR PRO GLU PRO SER LEU SEQRES 27 A 525 VAL SER TYR GLY ALA ALA GLN LEU ALA ARG ARG LEU GLY SEQRES 28 A 525 LEU PRO PHE ARG THR GLY GLY SER LEU CYS GLY SER LYS SEQRES 29 A 525 VAL PRO ASP ALA GLN ALA ALA HIS GLU SER ALA ASN THR SEQRES 30 A 525 LEU ASN MSE THR LEU LEU ALA GLY THR ASN PHE VAL LEU SEQRES 31 A 525 HIS ALA ALA GLY TRP LEU GLU GLY GLY LEU VAL SER SER SEQRES 32 A 525 TYR GLU LYS PHE MSE ILE ASP GLN ASP GLN LEU GLY MSE SEQRES 33 A 525 MSE GLN LYS MSE ALA GLU GLY VAL ASP LEU SER GLU ASP SEQRES 34 A 525 ALA GLN ALA LEU ASP ALA ILE ARG GLU VAL GLY PRO GLY SEQRES 35 A 525 SER HIS TYR LEU GLY CYS ALA HIS THR GLN ALA ASN PHE SEQRES 36 A 525 GLN SER ALA PHE TYR ARG SER PRO LEU ALA ASP ASN ASN SEQRES 37 A 525 SER PHE GLU GLN TRP GLU ILE GLU GLY GLU LYS ARG ILE SEQRES 38 A 525 GLU GLN ARG ALA ASN ALA LEU ALA ARG SER TRP LEU GLU SEQRES 39 A 525 HIS TYR GLU ALA PRO TYR LEU ASP PRO ALA ILE ASP GLU SEQRES 40 A 525 ALA LEU LYS GLU PHE ILE ALA LYS ARG LYS ASP SER MSE SEQRES 41 A 525 PRO ASP ALA PHE THR MODRES 4YYC MSE A 169 MET MODIFIED RESIDUE MODRES 4YYC MSE A 173 MET MODIFIED RESIDUE MODRES 4YYC MSE A 195 MET MODIFIED RESIDUE MODRES 4YYC MSE A 208 MET MODIFIED RESIDUE MODRES 4YYC MSE A 223 MET MODIFIED RESIDUE MODRES 4YYC MSE A 249 MET MODIFIED RESIDUE MODRES 4YYC MSE A 255 MET MODIFIED RESIDUE MODRES 4YYC MSE A 280 MET MODIFIED RESIDUE MODRES 4YYC MSE A 323 MET MODIFIED RESIDUE MODRES 4YYC MSE A 379 MET MODIFIED RESIDUE MODRES 4YYC MSE A 407 MET MODIFIED RESIDUE MODRES 4YYC MSE A 415 MET MODIFIED RESIDUE MODRES 4YYC MSE A 416 MET MODIFIED RESIDUE MODRES 4YYC MSE A 419 MET MODIFIED RESIDUE MODRES 4YYC MSE A 519 MET MODIFIED RESIDUE HET MSE A 169 8 HET MSE A 173 8 HET MSE A 195 8 HET MSE A 208 8 HET MSE A 223 8 HET MSE A 249 8 HET MSE A 255 8 HET MSE A 280 8 HET MSE A 323 5 HET MSE A 379 8 HET MSE A 407 8 HET MSE A 415 13 HET MSE A 416 8 HET MSE A 419 13 HET MSE A 519 13 HET UNL A 601 7 HET CL A 602 1 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM CL CHLORIDE ION FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 HOH *525(H2 O) HELIX 1 AA1 ASP A 54 ILE A 72 1 19 HELIX 2 AA2 ASP A 79 GLY A 90 1 12 HELIX 3 AA3 GLY A 103 LEU A 109 1 7 HELIX 4 AA4 LYS A 110 ALA A 112 5 3 HELIX 5 AA5 ASN A 122 ASN A 126 5 5 HELIX 6 AA6 THR A 156 ALA A 170 1 15 HELIX 7 AA7 LYS A 190 TYR A 202 1 13 HELIX 8 AA8 ALA A 213 GLY A 229 1 17 HELIX 9 AA9 GLY A 229 ASN A 236 1 8 HELIX 10 AB1 ASP A 252 HIS A 265 1 14 HELIX 11 AB2 THR A 284 ARG A 307 1 24 HELIX 12 AB3 THR A 332 GLY A 350 1 19 HELIX 13 AB4 ASP A 366 ALA A 383 1 18 HELIX 14 AB5 GLU A 396 GLY A 398 5 3 HELIX 15 AB6 TYR A 403 ALA A 420 1 18 HELIX 16 AB7 SER A 426 ALA A 431 1 6 HELIX 17 AB8 ALA A 431 GLY A 439 1 9 HELIX 18 AB9 SER A 468 GLU A 475 1 8 HELIX 19 AC1 ARG A 479 TYR A 495 1 17 HELIX 20 AC2 ASP A 501 SER A 518 1 18 SHEET 1 AA1 3 ILE A 43 GLN A 44 0 SHEET 2 AA1 3 ALA A 133 PHE A 136 -1 O THR A 134 N ILE A 43 SHEET 3 AA1 3 PHE A 387 VAL A 388 1 O VAL A 388 N VAL A 135 SHEET 1 AA2 4 ASP A 92 ARG A 94 0 SHEET 2 AA2 4 ARG A 97 HIS A 99 -1 O ARG A 97 N ARG A 94 SHEET 3 AA2 4 ILE A 74 PHE A 76 -1 N ILE A 74 O VAL A 98 SHEET 4 AA2 4 VAL A 250 PHE A 251 1 O PHE A 251 N GLU A 75 SHEET 1 AA3 2 ASP A 115 TRP A 118 0 SHEET 2 AA3 2 ALA A 127 GLY A 130 -1 O ILE A 129 N PHE A 116 SHEET 1 AA4 4 ARG A 152 TYR A 154 0 SHEET 2 AA4 4 PHE A 144 ARG A 146 -1 N VAL A 145 O ARG A 153 SHEET 3 AA4 4 VAL A 400 SER A 402 1 O SER A 401 N PHE A 144 SHEET 4 AA4 4 TRP A 394 LEU A 395 -1 N LEU A 395 O VAL A 400 SHEET 1 AA5 5 PHE A 207 MSE A 208 0 SHEET 2 AA5 5 THR A 239 ASN A 244 1 O LEU A 240 N PHE A 207 SHEET 3 AA5 5 ALA A 268 SER A 272 1 O VAL A 270 N ASN A 241 SHEET 4 AA5 5 VAL A 312 GLY A 315 1 O LEU A 313 N CYS A 269 SHEET 5 AA5 5 PHE A 353 ARG A 354 1 O ARG A 354 N PHE A 314 SHEET 1 AA6 3 PHE A 274 LEU A 276 0 SHEET 2 AA6 3 PHE A 317 ILE A 321 1 O PHE A 317 N ILE A 275 SHEET 3 AA6 3 PRO A 328 THR A 329 -1 O THR A 329 N SER A 320 LINK C TYR A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N ALA A 170 1555 1555 1.33 LINK C SER A 172 N MSE A 173 1555 1555 1.34 LINK C MSE A 173 N HIS A 174 1555 1555 1.33 LINK C ASP A 194 N MSE A 195 1555 1555 1.33 LINK C MSE A 195 N VAL A 196 1555 1555 1.34 LINK C PHE A 207 N MSE A 208 1555 1555 1.32 LINK C MSE A 208 N GLY A 209 1555 1555 1.32 LINK C ALA A 222 N MSE A 223 1555 1555 1.33 LINK C MSE A 223 N ALA A 224 1555 1555 1.33 LINK C PRO A 248 N MSE A 249 1555 1555 1.34 LINK C MSE A 249 N VAL A 250 1555 1555 1.33 LINK C THR A 254 N MSE A 255 1555 1555 1.33 LINK C MSE A 255 N LEU A 256 1555 1555 1.32 LINK C ALA A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N SER A 281 1555 1555 1.33 LINK C SER A 322 N MSE A 323 1555 1555 1.34 LINK C MSE A 323 N GLN A 324 1555 1555 1.34 LINK C ASN A 378 N MSE A 379 1555 1555 1.31 LINK C MSE A 379 N THR A 380 1555 1555 1.34 LINK C PHE A 406 N MSE A 407 1555 1555 1.33 LINK C MSE A 407 N ILE A 408 1555 1555 1.32 LINK C GLY A 414 N MSE A 415 1555 1555 1.33 LINK C MSE A 415 N MSE A 416 1555 1555 1.32 LINK C MSE A 416 N GLN A 417 1555 1555 1.33 LINK C LYS A 418 N MSE A 419 1555 1555 1.34 LINK C MSE A 419 N ALA A 420 1555 1555 1.32 LINK C SER A 518 N MSE A 519 1555 1555 1.33 LINK C MSE A 519 N PRO A 520 1555 1555 1.34 CISPEP 1 SER A 247 PRO A 248 0 8.21 SITE 1 AC1 2 LYS A 516 HOH A 759 CRYST1 89.162 60.025 88.345 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011216 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011319 0.00000