HEADER TRANSFERASE 02-SEP-14 4WBB TITLE SINGLE TURNOVER AUTOPHOSPHORYLATION CYCLE OF THE PKA RIIB HOLOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE II-BETA REGULATORY COMPND 3 SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PKA C-ALPHA; COMPND 10 EC: 2.7.11.11; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRKAR2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: PRKACA, PKACA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PKA, COMPLEX, SINGLE TURNOVER, OSCILLATIONS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,M.J.KNAPE,L.G.AHUJA,M.M.KESHWANI,C.C.KING,M.SASTRI, AUTHOR 2 F.W.HERBERG,S.S.TAYLOR REVDAT 6 27-DEC-23 4WBB 1 LINK REVDAT 5 25-DEC-19 4WBB 1 REMARK REVDAT 4 20-SEP-17 4WBB 1 REMARK REVDAT 3 26-AUG-15 4WBB 1 REMARK REVDAT 2 22-JUL-15 4WBB 1 JRNL REVDAT 1 20-MAY-15 4WBB 0 JRNL AUTH P.ZHANG,M.J.KNAPE,L.G.AHUJA,M.M.KESHWANI,C.C.KING,M.SASTRI, JRNL AUTH 2 F.W.HERBERG,S.S.TAYLOR JRNL TITL SINGLE TURNOVER AUTOPHOSPHORYLATION CYCLE OF THE PKA RII JRNL TITL 2 BETA HOLOENZYME. JRNL REF PLOS BIOL. V. 13 02192 2015 JRNL REFN ESSN 1545-7885 JRNL PMID 26158466 JRNL DOI 10.1371/JOURNAL.PBIO.1002192 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 23056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4915 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RIIB (R230K):C APO COMPLEX WAS REMARK 280 CRYSTALLIZED IN 20%PEG8000, 8% ETHYLENE GLYCOL, 20MM MESPH7.5 REMARK 280 HEPES . TO MAKE CAATP BINDING HOLOENZYME CRYSTALS, THE APO REMARK 280 HOLOENZYME CRYSTALS WERE SOAKED WITH 20%PEG8000, 8% ETHYLENE REMARK 280 GLYCOL, 20MM MESPH7.5 HEPES, 5MM CACL2 AND 1MM ATP AT PH5.8 REMARK 280 SOLUTION OVERNIGHT, BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 75.19000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 106.97550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 75.19000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 106.97550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 75.19000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 106.97550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 75.19000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 106.97550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ILE A 3 REMARK 465 GLU A 4 REMARK 465 ILE A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 GLN A 14 REMARK 465 GLY A 15 REMARK 465 PHE A 16 REMARK 465 THR A 17 REMARK 465 VAL A 18 REMARK 465 GLU A 19 REMARK 465 VAL A 20 REMARK 465 LEU A 21 REMARK 465 ARG A 22 REMARK 465 HIS A 23 REMARK 465 GLN A 24 REMARK 465 PRO A 25 REMARK 465 ALA A 26 REMARK 465 ASP A 27 REMARK 465 LEU A 28 REMARK 465 LEU A 29 REMARK 465 GLU A 30 REMARK 465 PHE A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 GLN A 34 REMARK 465 HIS A 35 REMARK 465 PHE A 36 REMARK 465 THR A 37 REMARK 465 ARG A 38 REMARK 465 LEU A 39 REMARK 465 GLN A 40 REMARK 465 GLN A 41 REMARK 465 GLU A 42 REMARK 465 ASN A 43 REMARK 465 GLU A 44 REMARK 465 ARG A 45 REMARK 465 LYS A 46 REMARK 465 GLY A 47 REMARK 465 ALA A 48 REMARK 465 ALA A 49 REMARK 465 ARG A 50 REMARK 465 PHE A 51 REMARK 465 GLY A 52 REMARK 465 HIS A 53 REMARK 465 GLU A 54 REMARK 465 GLY A 55 REMARK 465 ARG A 56 REMARK 465 THR A 57 REMARK 465 TRP A 58 REMARK 465 GLY A 59 REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 GLY A 62 REMARK 465 ALA A 63 REMARK 465 ALA A 64 REMARK 465 ALA A 65 REMARK 465 GLY A 66 REMARK 465 GLY A 67 REMARK 465 GLY A 68 REMARK 465 ILE A 69 REMARK 465 PRO A 70 REMARK 465 SER A 71 REMARK 465 LYS A 72 REMARK 465 GLY A 73 REMARK 465 VAL A 74 REMARK 465 ASN A 75 REMARK 465 PHE A 76 REMARK 465 ALA A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 PRO A 80 REMARK 465 MET A 81 REMARK 465 ARG A 82 REMARK 465 SER A 83 REMARK 465 ASP A 84 REMARK 465 SER A 85 REMARK 465 GLU A 86 REMARK 465 ASN A 87 REMARK 465 GLY A 88 REMARK 465 GLU A 89 REMARK 465 GLU A 90 REMARK 465 GLU A 91 REMARK 465 GLU A 92 REMARK 465 ALA A 93 REMARK 465 ALA A 94 REMARK 465 GLU A 95 REMARK 465 ALA A 96 REMARK 465 GLY A 97 REMARK 465 ALA A 98 REMARK 465 PHE A 99 REMARK 465 ASN A 100 REMARK 465 ALA A 101 REMARK 465 PRO A 102 REMARK 465 VAL A 103 REMARK 465 GLU A 122 REMARK 465 GLU A 123 REMARK 465 GLU A 124 REMARK 465 ASP A 125 REMARK 465 ASP A 126 REMARK 465 ALA A 127 REMARK 465 GLU A 128 REMARK 465 SER A 129 REMARK 465 ARG A 325 REMARK 465 LYS A 326 REMARK 465 GLY A 327 REMARK 465 LYS A 328 REMARK 465 SER A 329 REMARK 465 GLU A 330 REMARK 465 VAL A 331 REMARK 465 GLU A 332 REMARK 465 GLU A 333 REMARK 465 ASN A 334 REMARK 465 GLY A 335 REMARK 465 ALA A 336 REMARK 465 ASN A 393 REMARK 465 ILE A 394 REMARK 465 ALA A 395 REMARK 465 THR A 396 REMARK 465 TYR A 397 REMARK 465 GLU A 398 REMARK 465 GLU A 399 REMARK 465 GLN A 400 REMARK 465 LEU A 401 REMARK 465 VAL A 402 REMARK 465 ALA A 403 REMARK 465 LEU A 404 REMARK 465 PHE A 405 REMARK 465 GLY A 406 REMARK 465 THR A 407 REMARK 465 ASN A 408 REMARK 465 MET A 409 REMARK 465 ASP A 410 REMARK 465 ILE A 411 REMARK 465 VAL A 412 REMARK 465 GLU A 413 REMARK 465 PRO A 414 REMARK 465 THR A 415 REMARK 465 ALA A 416 REMARK 465 GLY B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 GLU B 11 REMARK 465 GLN B 12 REMARK 465 GLU B 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 104 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN A 257 O HOH A 618 1.76 REMARK 500 O ASP B 25 O HOH B 517 1.91 REMARK 500 O CYS A 209 O HOH A 601 1.92 REMARK 500 O VAL A 337 O HOH A 602 1.95 REMARK 500 N LYS B 29 O HOH B 517 1.97 REMARK 500 O ASP A 185 O HOH A 609 1.97 REMARK 500 O ILE A 254 O HOH A 618 2.01 REMARK 500 CG1 VAL A 337 O HOH A 602 2.01 REMARK 500 O GLY A 367 O HOH A 623 2.01 REMARK 500 O ASP A 184 O HOH A 611 2.02 REMARK 500 O PHE A 107 O HOH A 603 2.06 REMARK 500 O HOH A 608 O HOH A 612 2.06 REMARK 500 OG1 THR A 196 OG1 THR A 237 2.06 REMARK 500 OD2 ASP A 297 O HOH A 621 2.08 REMARK 500 O TYR A 295 O HOH A 623 2.08 REMARK 500 OD1 ASP A 138 O HOH A 604 2.10 REMARK 500 N THR B 299 O HOH B 518 2.10 REMARK 500 CB PRO B 33 NE2 GLN B 96 2.12 REMARK 500 O3P SEP A 112 O HOH A 607 2.13 REMARK 500 O THR A 108 O HOH A 613 2.14 REMARK 500 N PHE A 197 O HOH A 624 2.14 REMARK 500 CA THR A 368 O HOH A 623 2.15 REMARK 500 C ILE A 254 O HOH A 618 2.15 REMARK 500 O GLU A 266 N ILE A 269 2.16 REMARK 500 O MET A 264 O HOH A 612 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 229 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO A 358 C - N - CA ANGL. DEV. = 12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 105 24.19 -78.09 REMARK 500 ASN A 155 65.07 -109.53 REMARK 500 ASP A 193 -65.14 -94.51 REMARK 500 ASP A 204 -101.99 -123.69 REMARK 500 VAL A 210 -144.43 -104.75 REMARK 500 ASN A 215 4.51 58.11 REMARK 500 SER A 238 175.67 174.70 REMARK 500 ARG A 262 -100.55 -97.66 REMARK 500 SER A 310 159.38 179.72 REMARK 500 ALA A 340 155.32 175.48 REMARK 500 PHE A 343 -167.02 -108.51 REMARK 500 GLU A 350 3.18 -61.40 REMARK 500 PRO A 358 133.43 -31.07 REMARK 500 MET A 390 14.26 -68.17 REMARK 500 LYS A 391 -108.11 -92.91 REMARK 500 LEU B 19 -73.96 -42.12 REMARK 500 ALA B 20 -38.47 -39.84 REMARK 500 GLN B 35 -133.62 -119.74 REMARK 500 ASN B 36 74.83 -66.04 REMARK 500 THR B 37 -70.51 -53.49 REMARK 500 ALA B 38 -141.01 -108.84 REMARK 500 ARG B 56 109.22 160.79 REMARK 500 ASP B 75 104.86 -59.38 REMARK 500 ILE B 85 -70.86 -42.05 REMARK 500 PHE B 100 137.01 -171.19 REMARK 500 PHE B 110 -179.75 -173.29 REMARK 500 ARG B 165 10.07 55.43 REMARK 500 ASP B 166 47.32 -140.95 REMARK 500 THR B 183 -40.66 -133.99 REMARK 500 ASN B 216 -117.62 -131.01 REMARK 500 ASP B 241 -72.70 -57.74 REMARK 500 LEU B 273 47.52 -81.87 REMARK 500 ASN B 293 34.64 -90.89 REMARK 500 HIS B 294 -166.36 -70.66 REMARK 500 PRO B 313 13.52 -69.24 REMARK 500 PHE B 314 123.26 -179.09 REMARK 500 LYS B 319 -120.72 -117.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SEP A 112 O3P REMARK 620 2 ADP A 502 O2B 85.3 REMARK 620 3 ASP B 184 OD1 82.3 62.1 REMARK 620 4 ASP B 184 OD2 130.5 84.2 50.4 REMARK 620 5 HOH B 505 O 85.5 133.3 71.3 68.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 502 O2B REMARK 620 2 ADP A 502 O3B 50.5 REMARK 620 3 ADP A 502 O2A 66.0 66.4 REMARK 620 4 HOH A 607 O 98.4 118.0 156.9 REMARK 620 5 ASN B 171 OD1 137.6 143.2 85.1 97.4 REMARK 620 6 ASP B 184 OD1 55.1 104.8 76.3 80.8 89.4 REMARK 620 7 HOH B 504 O 139.1 91.6 86.4 115.2 62.7 148.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 DBREF 4WBB A 1 416 UNP P31324 KAP3_MOUSE 1 416 DBREF 4WBB B 1 350 UNP P05132 KAPCA_MOUSE 2 351 SEQADV 4WBB LYS A 230 UNP P31324 ARG 230 ENGINEERED MUTATION SEQRES 1 A 416 MET SER ILE GLU ILE PRO ALA GLY LEU THR GLU LEU LEU SEQRES 2 A 416 GLN GLY PHE THR VAL GLU VAL LEU ARG HIS GLN PRO ALA SEQRES 3 A 416 ASP LEU LEU GLU PHE ALA LEU GLN HIS PHE THR ARG LEU SEQRES 4 A 416 GLN GLN GLU ASN GLU ARG LYS GLY ALA ALA ARG PHE GLY SEQRES 5 A 416 HIS GLU GLY ARG THR TRP GLY ASP ALA GLY ALA ALA ALA SEQRES 6 A 416 GLY GLY GLY ILE PRO SER LYS GLY VAL ASN PHE ALA GLU SEQRES 7 A 416 GLU PRO MET ARG SER ASP SER GLU ASN GLY GLU GLU GLU SEQRES 8 A 416 GLU ALA ALA GLU ALA GLY ALA PHE ASN ALA PRO VAL ILE SEQRES 9 A 416 ASN ARG PHE THR ARG ARG ALA SEP VAL CYS ALA GLU ALA SEQRES 10 A 416 TYR ASN PRO ASP GLU GLU GLU ASP ASP ALA GLU SER ARG SEQRES 11 A 416 ILE ILE HIS PRO LYS THR ASP ASP GLN ARG ASN ARG LEU SEQRES 12 A 416 GLN GLU ALA CYS LYS ASP ILE LEU LEU PHE LYS ASN LEU SEQRES 13 A 416 ASP PRO GLU GLN MET SER GLN VAL LEU ASP ALA MET PHE SEQRES 14 A 416 GLU LYS LEU VAL LYS GLU GLY GLU HIS VAL ILE ASP GLN SEQRES 15 A 416 GLY ASP ASP GLY ASP ASN PHE TYR VAL ILE ASP ARG GLY SEQRES 16 A 416 THR PHE ASP ILE TYR VAL LYS CYS ASP GLY VAL GLY ARG SEQRES 17 A 416 CYS VAL GLY ASN TYR ASP ASN ARG GLY SER PHE GLY GLU SEQRES 18 A 416 LEU ALA LEU MET TYR ASN THR PRO LYS ALA ALA THR ILE SEQRES 19 A 416 THR ALA THR SER PRO GLY ALA LEU TRP GLY LEU ASP ARG SEQRES 20 A 416 VAL THR PHE ARG ARG ILE ILE VAL LYS ASN ASN ALA LYS SEQRES 21 A 416 LYS ARG LYS MET TYR GLU SER PHE ILE GLU SER LEU PRO SEQRES 22 A 416 PHE LEU LYS SER LEU GLU VAL SER GLU ARG LEU LYS VAL SEQRES 23 A 416 VAL ASP VAL ILE GLY THR LYS VAL TYR ASN ASP GLY GLU SEQRES 24 A 416 GLN ILE ILE ALA GLN GLY ASP LEU ALA ASP SER PHE PHE SEQRES 25 A 416 ILE VAL GLU SER GLY GLU VAL LYS ILE THR MET LYS ARG SEQRES 26 A 416 LYS GLY LYS SER GLU VAL GLU GLU ASN GLY ALA VAL GLU SEQRES 27 A 416 ILE ALA ARG CYS PHE ARG GLY GLN TYR PHE GLY GLU LEU SEQRES 28 A 416 ALA LEU VAL THR ASN LYS PRO ARG ALA ALA SER ALA HIS SEQRES 29 A 416 ALA ILE GLY THR VAL LYS CYS LEU ALA MET ASP VAL GLN SEQRES 30 A 416 ALA PHE GLU ARG LEU LEU GLY PRO CYS MET GLU ILE MET SEQRES 31 A 416 LYS ARG ASN ILE ALA THR TYR GLU GLU GLN LEU VAL ALA SEQRES 32 A 416 LEU PHE GLY THR ASN MET ASP ILE VAL GLU PRO THR ALA SEQRES 1 B 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 B 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 B 350 LEU LYS LYS TRP GLU THR PRO SER GLN ASN THR ALA GLN SEQRES 4 B 350 LEU ASP GLN PHE ASP ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 B 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SER SEQRES 6 B 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 B 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 B 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 B 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 B 350 MET VAL MET GLU TYR VAL ALA GLY GLY GLU MET PHE SER SEQRES 11 B 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 B 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 B 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 B 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 B 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 B 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 B 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 B 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 B 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 B 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 B 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 B 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 B 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 B 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 B 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 B 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 B 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE MODRES 4WBB SEP A 112 SER MODIFIED RESIDUE MODRES 4WBB SEP B 139 SER MODIFIED RESIDUE MODRES 4WBB TPO B 197 THR MODIFIED RESIDUE MODRES 4WBB SEP B 338 SER MODIFIED RESIDUE HET SEP A 112 10 HET SEP B 139 10 HET TPO B 197 11 HET SEP B 338 10 HET CA A 501 1 HET ADP A 502 27 HET CA B 401 1 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM CA CALCIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 2 TPO C4 H10 N O6 P FORMUL 3 CA 2(CA 2+) FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *42(H2 O) HELIX 1 AA1 ILE A 104 THR A 108 5 5 HELIX 2 AA2 THR A 136 ALA A 146 1 11 HELIX 3 AA3 ILE A 150 ASN A 155 1 6 HELIX 4 AA4 ASP A 157 MET A 168 1 12 HELIX 5 AA5 GLY A 220 MET A 225 5 6 HELIX 6 AA6 ARG A 247 LYS A 261 1 15 HELIX 7 AA7 TYR A 265 SER A 271 1 7 HELIX 8 AA8 LEU A 272 LYS A 276 5 5 HELIX 9 AA9 GLU A 279 ILE A 290 1 12 HELIX 10 AB1 GLY A 349 VAL A 354 5 6 HELIX 11 AB2 VAL A 376 GLY A 384 1 9 HELIX 12 AB3 PRO A 385 MET A 390 1 6 HELIX 13 AB4 LYS B 16 THR B 32 1 17 HELIX 14 AB5 GLN B 39 ASP B 41 5 3 HELIX 15 AB6 LYS B 76 LEU B 82 1 7 HELIX 16 AB7 GLN B 84 GLN B 96 1 13 HELIX 17 AB8 GLU B 127 GLY B 136 1 10 HELIX 18 AB9 SEP B 139 LEU B 160 1 22 HELIX 19 AC1 THR B 201 LEU B 205 5 5 HELIX 20 AC2 ALA B 206 LEU B 211 1 6 HELIX 21 AC3 LYS B 217 GLY B 234 1 18 HELIX 22 AC4 GLN B 242 GLY B 253 1 12 HELIX 23 AC5 SER B 262 LEU B 273 1 12 HELIX 24 AC6 ASP B 276 ARG B 280 5 5 HELIX 25 AC7 VAL B 288 ASN B 293 1 6 HELIX 26 AC8 ASP B 301 GLN B 307 1 7 HELIX 27 AC9 GLY B 344 THR B 348 5 5 SHEET 1 AA1 2 VAL A 113 CYS A 114 0 SHEET 2 AA1 2 CYS B 199 GLY B 200 -1 O GLY B 200 N VAL A 113 SHEET 1 AA2 4 PHE A 169 VAL A 173 0 SHEET 2 AA2 4 GLY A 240 ASP A 246 -1 O GLY A 240 N VAL A 173 SHEET 3 AA2 4 ASN A 188 ARG A 194 -1 N PHE A 189 O LEU A 245 SHEET 4 AA2 4 SER A 218 PHE A 219 -1 O PHE A 219 N TYR A 190 SHEET 1 AA3 4 HIS A 178 ILE A 180 0 SHEET 2 AA3 4 THR A 233 ALA A 236 -1 O ILE A 234 N VAL A 179 SHEET 3 AA3 4 THR A 196 TYR A 200 -1 N TYR A 200 O THR A 233 SHEET 4 AA3 4 ASN A 212 ASP A 214 -1 O TYR A 213 N PHE A 197 SHEET 1 AA4 4 GLY A 291 TYR A 295 0 SHEET 2 AA4 4 SER A 362 ASP A 375 -1 O CYS A 371 N LYS A 293 SHEET 3 AA4 4 SER A 310 THR A 322 -1 N ILE A 313 O LEU A 372 SHEET 4 AA4 4 GLU A 338 CYS A 342 -1 O ILE A 339 N ILE A 321 SHEET 1 AA5 4 GLN A 300 ILE A 302 0 SHEET 2 AA5 4 SER A 362 ASP A 375 -1 O ALA A 363 N ILE A 302 SHEET 3 AA5 4 SER A 310 THR A 322 -1 N ILE A 313 O LEU A 372 SHEET 4 AA5 4 TYR A 347 PHE A 348 -1 O PHE A 348 N PHE A 312 SHEET 1 AA6 5 PHE B 43 GLY B 50 0 SHEET 2 AA6 5 VAL B 57 HIS B 62 -1 O VAL B 57 N LEU B 49 SHEET 3 AA6 5 HIS B 68 ASP B 75 -1 O MET B 71 N MET B 58 SHEET 4 AA6 5 ASN B 115 GLU B 121 -1 O MET B 118 N LYS B 72 SHEET 5 AA6 5 LEU B 106 LYS B 111 -1 N PHE B 110 O TYR B 117 SHEET 1 AA7 2 LEU B 162 ILE B 163 0 SHEET 2 AA7 2 LYS B 189 ARG B 190 -1 O LYS B 189 N ILE B 163 SHEET 1 AA8 2 LEU B 172 ILE B 174 0 SHEET 2 AA8 2 ILE B 180 VAL B 182 -1 O GLN B 181 N LEU B 173 LINK C ALA A 111 N SEP A 112 1555 1555 1.33 LINK C SEP A 112 N VAL A 113 1555 1555 1.32 LINK C PHE B 138 N SEP B 139 1555 1555 1.33 LINK C SEP B 139 N GLU B 140 1555 1555 1.32 LINK C TRP B 196 N TPO B 197 1555 1555 1.33 LINK C TPO B 197 N LEU B 198 1555 1555 1.32 LINK C VAL B 337 N SEP B 338 1555 1555 1.33 LINK C SEP B 338 N ILE B 339 1555 1555 1.33 LINK O3P SEP A 112 CA CA A 501 1555 1555 2.41 LINK CA CA A 501 O2B ADP A 502 1555 1555 2.10 LINK CA CA A 501 OD1 ASP B 184 1555 1555 2.41 LINK CA CA A 501 OD2 ASP B 184 1555 1555 2.69 LINK CA CA A 501 O HOH B 505 1555 1555 2.51 LINK O2B ADP A 502 CA CA B 401 1555 1555 2.70 LINK O3B ADP A 502 CA CA B 401 1555 1555 3.16 LINK O2A ADP A 502 CA CA B 401 1555 1555 2.11 LINK O HOH A 607 CA CA B 401 1555 1555 2.09 LINK OD1 ASN B 171 CA CA B 401 1555 1555 2.56 LINK OD1 ASP B 184 CA CA B 401 1555 1555 2.30 LINK CA CA B 401 O HOH B 504 1555 1555 2.70 CISPEP 1 ASP A 204 GLY A 205 0 6.13 CISPEP 2 LYS A 263 MET A 264 0 14.33 CISPEP 3 SER B 53 PHE B 54 0 2.96 CISPEP 4 PHE B 54 GLY B 55 0 1.36 SITE 1 AC1 4 SEP A 112 ADP A 502 ASP B 184 HOH B 505 SITE 1 AC2 16 SEP A 112 CA A 501 GLY B 52 SER B 53 SITE 2 AC2 16 VAL B 57 ALA B 70 LYS B 72 GLU B 121 SITE 3 AC2 16 VAL B 123 GLU B 127 ASN B 171 LEU B 173 SITE 4 AC2 16 THR B 183 ASP B 184 PHE B 327 CA B 401 SITE 1 AC3 6 SEP A 112 ADP A 502 HOH A 607 ASN B 171 SITE 2 AC3 6 ASP B 184 HOH B 504 CRYST1 150.380 213.951 61.967 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006650 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016138 0.00000