HEADER TRANSFERASE 05-SEP-14 4UZF TITLE R66E MUTANT OF FAD SYNTHETASE FROM CORYNEBACTERIUM AMMONIAGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.26, 2.7.7.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM AMMONIAGENES; SOURCE 3 ORGANISM_TAXID: 1697; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TRANSFERASE, RIBOFLAVIN KINASE, NUCLEOTIDE-BINDING, ATP- BINDING, KEYWDS 2 MULTIFUNCTIONAL ENZYME, NUCLEOTIDYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MARTINEZ-JULVEZ,B.HERGUEDAS,M.MILAGROS REVDAT 4 10-JAN-24 4UZF 1 REMARK REVDAT 3 09-AUG-17 4UZF 1 REMARK REVDAT 2 17-JUN-15 4UZF 1 JRNL REVDAT 1 08-APR-15 4UZF 0 JRNL AUTH A.SERRANO,M.SEBASTIAN,S.ARILLA-LUNA,S.BAQUEDANO, JRNL AUTH 2 M.C.PALLARES,A.LOSTAO,B.HERGUEDAS,A.VELAZQUEZ-CAMPOY, JRNL AUTH 3 M.MARTINEZ-JULVEZ,M.MEDINA JRNL TITL QUATERNARY ORGANIZATION IN A BIFUNCTIONAL PROKARYOTIC FAD JRNL TITL 2 SYNTHETASE: INVOLVEMENT OF AN ARGININE AT ITS JRNL TITL 3 ADENYLYLTRANSFERASE MODULE ON THE RIBOFLAVIN KINASE JRNL TITL 4 ACTIVITY. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1854 897 2015 JRNL REFN ISSN 0006-3002 JRNL PMID 25801930 JRNL DOI 10.1016/J.BBAPAP.2015.03.005 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 25602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1512 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5143 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.579 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5273 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7180 ; 1.240 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 665 ; 5.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;37.408 ;24.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 825 ;16.501 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.575 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 822 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4032 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 258-263 IN CHAIN A AND 260-262 IN CHAIN B REMARK 3 WERE NOT REFINED DUE TO THE LACK OF LOCAL ELECTRON DENSITY REMARK 4 REMARK 4 4UZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 44.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2X0K REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M LI2SO4 AND 0.1 M HEPES-NAOH PH REMARK 280 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.91700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.91700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.91700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.91700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.91700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.91700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 66.91700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 66.91700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 66.91700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 66.91700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 66.91700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 66.91700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 66.91700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 66.91700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 66.91700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 66.91700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 66.91700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 66.91700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 82310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 259 REMARK 465 PHE A 260 REMARK 465 GLY A 261 REMARK 465 ASP A 262 REMARK 465 PHE B 1260 REMARK 465 GLY B 1261 REMARK 465 ASP B 1262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 1320 O HOH B 2066 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 28 -168.18 -72.96 REMARK 500 ARG A 65 -28.65 75.03 REMARK 500 GLU A 112 -69.18 -93.93 REMARK 500 SER A 145 -52.34 84.69 REMARK 500 TYR A 279 130.36 -39.39 REMARK 500 VAL B1045 -175.64 -63.69 REMARK 500 LEU B1063 77.41 -118.45 REMARK 500 ARG B1065 -6.82 64.48 REMARK 500 SER B1145 -30.20 73.87 REMARK 500 ASP B1222 131.70 -39.93 REMARK 500 ASN B1241 59.73 -102.00 REMARK 500 TYR B1279 123.34 -36.01 REMARK 500 VAL B1288 -64.55 -106.87 REMARK 500 ALA B1324 0.87 -61.75 REMARK 500 HIS B1325 -67.08 45.74 REMARK 500 LYS B1326 -34.68 -39.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2012 DISTANCE = 6.71 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV B 2339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV A 1339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1340 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UZE RELATED DB: PDB REMARK 900 R66A MUTANT OF FAD SYNTHETASE FROM CORYNEBACTERIUM AMMONIAGENES DBREF 4UZF A 1 338 UNP Q59263 RIBF_CORAM 1 338 DBREF 4UZF B 1001 1338 UNP Q59263 RIBF_CORAM 1 338 SEQADV 4UZF GLU A 66 UNP Q59263 ARG 66 ENGINEERED MUTATION SEQADV 4UZF GLU B 1066 UNP Q59263 ARG 66 ENGINEERED MUTATION SEQRES 1 A 338 MET ASP ILE TRP TYR GLY THR ALA ALA VAL PRO LYS ASP SEQRES 2 A 338 LEU ASP ASN SER ALA VAL THR ILE GLY VAL PHE ASP GLY SEQRES 3 A 338 VAL HIS ARG GLY HIS GLN LYS LEU ILE ASN ALA THR VAL SEQRES 4 A 338 GLU LYS ALA ARG GLU VAL GLY ALA LYS ALA ILE MET VAL SEQRES 5 A 338 THR PHE ASP PRO HIS PRO VAL SER VAL PHE LEU PRO ARG SEQRES 6 A 338 GLU ALA PRO LEU GLY ILE THR THR LEU ALA GLU ARG PHE SEQRES 7 A 338 ALA LEU ALA GLU SER PHE GLY ILE ASP GLY VAL LEU VAL SEQRES 8 A 338 ILE ASP PHE THR ARG GLU LEU SER GLY THR SER PRO GLU SEQRES 9 A 338 LYS TYR VAL GLU PHE LEU LEU GLU ASP THR LEU HIS ALA SEQRES 10 A 338 SER HIS VAL VAL VAL GLY ALA ASN PHE THR PHE GLY GLU SEQRES 11 A 338 ASN ALA ALA GLY THR ALA ASP SER LEU ARG GLN ILE CYS SEQRES 12 A 338 GLN SER ARG LEU THR VAL ASP VAL ILE ASP LEU LEU ASP SEQRES 13 A 338 ASP GLU GLY VAL ARG ILE SER SER THR THR VAL ARG GLU SEQRES 14 A 338 PHE LEU SER GLU GLY ASP VAL ALA ARG ALA ASN TRP ALA SEQRES 15 A 338 LEU GLY ARG HIS PHE TYR VAL THR GLY PRO VAL VAL ARG SEQRES 16 A 338 GLY ALA GLY ARG GLY GLY LYS GLU LEU GLY PHE PRO THR SEQRES 17 A 338 ALA ASN GLN TYR PHE HIS ASP THR VAL ALA LEU PRO ALA SEQRES 18 A 338 ASP GLY VAL TYR ALA GLY TRP LEU THR ILE LEU PRO THR SEQRES 19 A 338 GLU ALA PRO VAL SER GLY ASN MET GLU PRO GLU VAL ALA SEQRES 20 A 338 TYR ALA ALA ALA ILE SER VAL GLY THR ASN PRO THR PHE SEQRES 21 A 338 GLY ASP GLU GLN ARG SER VAL GLU SER PHE VAL LEU ASP SEQRES 22 A 338 ARG ASP ALA ASP LEU TYR GLY HIS ASP VAL LYS VAL GLU SEQRES 23 A 338 PHE VAL ASP HIS VAL ARG ALA MET GLU LYS PHE ASP SER SEQRES 24 A 338 VAL GLU GLN LEU LEU GLU VAL MET ALA LYS ASP VAL GLN SEQRES 25 A 338 LYS THR ARG THR LEU LEU ALA GLN ASP VAL GLN ALA HIS SEQRES 26 A 338 LYS MET ALA PRO GLU THR TYR PHE LEU GLN ALA GLU SER SEQRES 1 B 338 MET ASP ILE TRP TYR GLY THR ALA ALA VAL PRO LYS ASP SEQRES 2 B 338 LEU ASP ASN SER ALA VAL THR ILE GLY VAL PHE ASP GLY SEQRES 3 B 338 VAL HIS ARG GLY HIS GLN LYS LEU ILE ASN ALA THR VAL SEQRES 4 B 338 GLU LYS ALA ARG GLU VAL GLY ALA LYS ALA ILE MET VAL SEQRES 5 B 338 THR PHE ASP PRO HIS PRO VAL SER VAL PHE LEU PRO ARG SEQRES 6 B 338 GLU ALA PRO LEU GLY ILE THR THR LEU ALA GLU ARG PHE SEQRES 7 B 338 ALA LEU ALA GLU SER PHE GLY ILE ASP GLY VAL LEU VAL SEQRES 8 B 338 ILE ASP PHE THR ARG GLU LEU SER GLY THR SER PRO GLU SEQRES 9 B 338 LYS TYR VAL GLU PHE LEU LEU GLU ASP THR LEU HIS ALA SEQRES 10 B 338 SER HIS VAL VAL VAL GLY ALA ASN PHE THR PHE GLY GLU SEQRES 11 B 338 ASN ALA ALA GLY THR ALA ASP SER LEU ARG GLN ILE CYS SEQRES 12 B 338 GLN SER ARG LEU THR VAL ASP VAL ILE ASP LEU LEU ASP SEQRES 13 B 338 ASP GLU GLY VAL ARG ILE SER SER THR THR VAL ARG GLU SEQRES 14 B 338 PHE LEU SER GLU GLY ASP VAL ALA ARG ALA ASN TRP ALA SEQRES 15 B 338 LEU GLY ARG HIS PHE TYR VAL THR GLY PRO VAL VAL ARG SEQRES 16 B 338 GLY ALA GLY ARG GLY GLY LYS GLU LEU GLY PHE PRO THR SEQRES 17 B 338 ALA ASN GLN TYR PHE HIS ASP THR VAL ALA LEU PRO ALA SEQRES 18 B 338 ASP GLY VAL TYR ALA GLY TRP LEU THR ILE LEU PRO THR SEQRES 19 B 338 GLU ALA PRO VAL SER GLY ASN MET GLU PRO GLU VAL ALA SEQRES 20 B 338 TYR ALA ALA ALA ILE SER VAL GLY THR ASN PRO THR PHE SEQRES 21 B 338 GLY ASP GLU GLN ARG SER VAL GLU SER PHE VAL LEU ASP SEQRES 22 B 338 ARG ASP ALA ASP LEU TYR GLY HIS ASP VAL LYS VAL GLU SEQRES 23 B 338 PHE VAL ASP HIS VAL ARG ALA MET GLU LYS PHE ASP SER SEQRES 24 B 338 VAL GLU GLN LEU LEU GLU VAL MET ALA LYS ASP VAL GLN SEQRES 25 B 338 LYS THR ARG THR LEU LEU ALA GLN ASP VAL GLN ALA HIS SEQRES 26 B 338 LYS MET ALA PRO GLU THR TYR PHE LEU GLN ALA GLU SER HET PPV A1339 9 HET SO4 A1340 5 HET PPV B2339 9 HET SO4 B2340 5 HETNAM PPV PYROPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 PPV 2(H4 O7 P2) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *172(H2 O) HELIX 1 1 THR A 7 VAL A 10 5 4 HELIX 2 2 HIS A 28 GLY A 46 1 19 HELIX 3 3 HIS A 57 LEU A 63 1 7 HELIX 4 4 THR A 73 PHE A 84 1 12 HELIX 5 5 SER A 102 LEU A 111 1 10 HELIX 6 6 GLY A 129 ALA A 133 5 5 HELIX 7 7 ALA A 136 GLN A 144 1 9 HELIX 8 8 SER A 163 GLU A 173 1 11 HELIX 9 9 ASP A 175 GLY A 184 1 10 HELIX 10 10 SER A 299 ALA A 324 1 26 HELIX 11 11 THR B 1007 VAL B 1010 5 4 HELIX 12 12 HIS B 1028 VAL B 1045 1 18 HELIX 13 13 HIS B 1057 LEU B 1063 1 7 HELIX 14 14 THR B 1073 PHE B 1084 1 12 HELIX 15 15 SER B 1102 LEU B 1111 1 10 HELIX 16 16 GLY B 1129 ALA B 1133 5 5 HELIX 17 17 THR B 1135 CYS B 1143 1 9 HELIX 18 18 SER B 1163 GLU B 1173 1 11 HELIX 19 19 ASP B 1175 GLY B 1184 1 10 HELIX 20 20 SER B 1299 ALA B 1324 1 26 SHEET 1 AA 6 ASP A 2 TYR A 5 0 SHEET 2 AA 6 GLY A 88 ILE A 92 1 O VAL A 89 N TRP A 4 SHEET 3 AA 6 LYS A 48 PHE A 54 1 O MET A 51 N LEU A 90 SHEET 4 AA 6 SER A 17 ILE A 21 1 O ALA A 18 N ILE A 50 SHEET 5 AA 6 ALA A 117 GLY A 123 1 N SER A 118 O SER A 17 SHEET 6 AA 6 THR A 148 ILE A 152 1 O THR A 148 N VAL A 120 SHEET 1 AB 2 THR A 127 PHE A 128 0 SHEET 2 AB 2 GLY A 134 THR A 135 -1 O GLY A 134 N PHE A 128 SHEET 1 AC 2 ASP A 156 ASP A 157 0 SHEET 2 AC 2 VAL A 160 ARG A 161 -1 O VAL A 160 N ASP A 157 SHEET 1 AD 6 TYR A 188 PRO A 192 0 SHEET 2 AD 6 ASP A 282 ARG A 292 -1 O VAL A 283 N GLY A 191 SHEET 3 AD 6 GLY A 223 ILE A 231 -1 O VAL A 224 N VAL A 291 SHEET 4 AD 6 ALA A 247 THR A 256 -1 O TYR A 248 N LEU A 229 SHEET 5 AD 6 ARG A 265 VAL A 271 -1 O SER A 266 N GLY A 255 SHEET 6 AD 6 ALA A 209 PHE A 213 -1 O ALA A 209 N SER A 269 SHEET 1 AE 5 TYR A 188 PRO A 192 0 SHEET 2 AE 5 ASP A 282 ARG A 292 -1 O VAL A 283 N GLY A 191 SHEET 3 AE 5 GLY A 223 ILE A 231 -1 O VAL A 224 N VAL A 291 SHEET 4 AE 5 ALA A 247 THR A 256 -1 O TYR A 248 N LEU A 229 SHEET 5 AE 5 TYR A 332 PHE A 333 -1 O PHE A 333 N ALA A 249 SHEET 1 AF 2 SER A 239 GLY A 240 0 SHEET 2 AF 2 ALA A 276 ASP A 277 -1 O ASP A 277 N SER A 239 SHEET 1 BA 6 ASP B1002 TYR B1005 0 SHEET 2 BA 6 GLY B1088 ILE B1092 1 O VAL B1089 N TRP B1004 SHEET 3 BA 6 LYS B1048 PHE B1054 1 O MET B1051 N LEU B1090 SHEET 4 BA 6 SER B1017 ILE B1021 1 O ALA B1018 N ILE B1050 SHEET 5 BA 6 ALA B1117 GLY B1123 1 N SER B1118 O SER B1017 SHEET 6 BA 6 THR B1148 ILE B1152 1 O THR B1148 N VAL B1120 SHEET 1 BB 2 LEU B1155 ASP B1157 0 SHEET 2 BB 2 VAL B1160 ILE B1162 -1 O VAL B1160 N ASP B1157 SHEET 1 BC 6 PHE B1187 PRO B1192 0 SHEET 2 BC 6 ASP B1282 ARG B1292 -1 O VAL B1283 N GLY B1191 SHEET 3 BC 6 GLY B1223 ILE B1231 -1 O VAL B1224 N VAL B1291 SHEET 4 BC 6 ALA B1247 THR B1256 -1 O TYR B1248 N LEU B1229 SHEET 5 BC 6 ARG B1265 VAL B1271 -1 O SER B1266 N GLY B1255 SHEET 6 BC 6 ALA B1209 PHE B1213 -1 O ALA B1209 N SER B1269 SHEET 1 BD 5 PHE B1187 PRO B1192 0 SHEET 2 BD 5 ASP B1282 ARG B1292 -1 O VAL B1283 N GLY B1191 SHEET 3 BD 5 GLY B1223 ILE B1231 -1 O VAL B1224 N VAL B1291 SHEET 4 BD 5 ALA B1247 THR B1256 -1 O TYR B1248 N LEU B1229 SHEET 5 BD 5 TYR B1332 PHE B1333 -1 O PHE B1333 N ALA B1249 SHEET 1 BE 2 SER B1239 GLY B1240 0 SHEET 2 BE 2 ALA B1276 ASP B1277 -1 O ASP B1277 N SER B1239 CISPEP 1 ASP A 55 PRO A 56 0 2.48 CISPEP 2 ASP B 1055 PRO B 1056 0 2.81 SITE 1 AC1 9 GLY B1022 VAL B1023 PHE B1024 HIS B1028 SITE 2 AC1 9 HIS B1031 ASN B1125 SER B1163 SER B1164 SITE 3 AC1 9 HOH B2006 SITE 1 AC2 10 GLY A 22 VAL A 23 PHE A 24 HIS A 28 SITE 2 AC2 10 HIS A 31 ASN A 125 SER A 163 SER A 164 SITE 3 AC2 10 HOH A2009 HOH A2045 SITE 1 AC3 4 TYR A 279 HOH A2056 THR B1073 LEU B1074 SITE 1 AC4 4 THR A 73 LEU A 74 ARG B1195 TYR B1279 CRYST1 133.834 133.834 133.834 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007472 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007472 0.00000