HEADER TRANSFERASE 11-JUN-14 4UP1 TITLE CRYSTAL STRUCTURE OF NATIVE HUMAN THYMIDYLATE SYNTHASE IN ACTIVE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET17XB KEYWDS TRANSFERASE, LOW-SALT CONDITIONS EXPDTA X-RAY DIFFRACTION AUTHOR P.DESCHAMPS,S.RETY,N.LEULLIOT REVDAT 4 10-JAN-24 4UP1 1 REMARK REVDAT 3 21-JUN-17 4UP1 1 JRNL REVDAT 2 14-JUN-17 4UP1 1 JRNL REVDAT 1 24-JUN-15 4UP1 0 JRNL AUTH P.DESCHAMPS,S.RETY,J.BAREILLE,N.LEULLIOT JRNL TITL CRYSTAL STRUCTURE OF THE ACTIVE FORM OF NATIVE HUMAN JRNL TITL 2 THYMIDYLATE SYNTHASE IN THE ABSENCE OF BOUND SUBSTRATES. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 73 336 2017 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 28580921 JRNL DOI 10.1107/S2053230X17007233 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 34332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5555 - 6.8419 0.91 2763 146 0.1610 0.1852 REMARK 3 2 6.8419 - 5.4333 0.95 2823 149 0.2026 0.2165 REMARK 3 3 5.4333 - 4.7472 0.97 2885 152 0.1773 0.2210 REMARK 3 4 4.7472 - 4.3135 0.97 2888 152 0.1690 0.2245 REMARK 3 5 4.3135 - 4.0045 0.98 2884 151 0.2049 0.2135 REMARK 3 6 4.0045 - 3.7685 0.98 2894 153 0.2305 0.2443 REMARK 3 7 3.7685 - 3.5799 0.98 2884 151 0.2433 0.2682 REMARK 3 8 3.5799 - 3.4241 0.98 2895 153 0.2709 0.3305 REMARK 3 9 3.4241 - 3.2923 0.99 2919 153 0.2873 0.3304 REMARK 3 10 3.2923 - 3.1787 0.91 2669 141 0.3030 0.3358 REMARK 3 11 3.1787 - 3.0794 0.75 2228 117 0.3282 0.3617 REMARK 3 12 3.0794 - 2.9914 0.64 1883 99 0.3272 0.3224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 9419 REMARK 3 ANGLE : 0.773 12750 REMARK 3 CHIRALITY : 0.033 1333 REMARK 3 PLANARITY : 0.003 1650 REMARK 3 DIHEDRAL : 13.345 3520 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1290060920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97627 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 46.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YPV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000 30MM AMMONIUM SULFATE REMARK 280 20MM B-MERCAPTOETHANOL 100MM TRIS-HCL PH 9 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.23000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 GLU A 19 REMARK 465 ARG A 20 REMARK 465 ASP A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 25 REMARK 465 MET A 309 REMARK 465 GLU A 310 REMARK 465 MET A 311 REMARK 465 ALA A 312 REMARK 465 VAL A 313 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 VAL B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 ARG B 10 REMARK 465 ARG B 11 REMARK 465 PRO B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 PRO B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 GLN B 18 REMARK 465 GLU B 19 REMARK 465 ARG B 20 REMARK 465 ASP B 21 REMARK 465 ALA B 22 REMARK 465 GLU B 23 REMARK 465 PRO B 24 REMARK 465 ARG B 25 REMARK 465 MET B 309 REMARK 465 GLU B 310 REMARK 465 MET B 311 REMARK 465 ALA B 312 REMARK 465 VAL B 313 REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 VAL C 3 REMARK 465 ALA C 4 REMARK 465 GLY C 5 REMARK 465 SER C 6 REMARK 465 GLU C 7 REMARK 465 LEU C 8 REMARK 465 PRO C 9 REMARK 465 ARG C 10 REMARK 465 ARG C 11 REMARK 465 PRO C 12 REMARK 465 LEU C 13 REMARK 465 PRO C 14 REMARK 465 PRO C 15 REMARK 465 ALA C 16 REMARK 465 ALA C 17 REMARK 465 GLN C 18 REMARK 465 GLU C 19 REMARK 465 ARG C 20 REMARK 465 ASP C 21 REMARK 465 ALA C 22 REMARK 465 GLU C 23 REMARK 465 PRO C 24 REMARK 465 ARG C 25 REMARK 465 ILE C 307 REMARK 465 LYS C 308 REMARK 465 MET C 309 REMARK 465 GLU C 310 REMARK 465 MET C 311 REMARK 465 ALA C 312 REMARK 465 VAL C 313 REMARK 465 MET D 1 REMARK 465 LEU D 2 REMARK 465 VAL D 3 REMARK 465 ALA D 4 REMARK 465 GLY D 5 REMARK 465 SER D 6 REMARK 465 GLU D 7 REMARK 465 LEU D 8 REMARK 465 PRO D 9 REMARK 465 ARG D 10 REMARK 465 ARG D 11 REMARK 465 PRO D 12 REMARK 465 LEU D 13 REMARK 465 PRO D 14 REMARK 465 PRO D 15 REMARK 465 ALA D 16 REMARK 465 ALA D 17 REMARK 465 GLN D 18 REMARK 465 GLU D 19 REMARK 465 ARG D 20 REMARK 465 ASP D 21 REMARK 465 ALA D 22 REMARK 465 GLU D 23 REMARK 465 PRO D 24 REMARK 465 ARG D 25 REMARK 465 MET D 309 REMARK 465 GLU D 310 REMARK 465 MET D 311 REMARK 465 ALA D 312 REMARK 465 VAL D 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 72 75.58 -69.63 REMARK 500 ARG A 147 -68.33 -127.07 REMARK 500 PRO B 72 75.15 -69.80 REMARK 500 ARG B 147 -67.96 -127.73 REMARK 500 PRO B 305 -178.12 -64.73 REMARK 500 PRO C 72 75.48 -69.31 REMARK 500 ARG C 147 -73.51 -124.80 REMARK 500 PRO D 72 75.68 -69.74 REMARK 500 ARG D 147 -67.63 -128.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UP2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI TRYPTOPHANASE PURIFIED FROM REMARK 900 ALKALINE STRESSED BACTERIAL CULTURE. DBREF 4UP1 A 1 313 UNP P04818 TYSY_HUMAN 1 313 DBREF 4UP1 B 1 313 UNP P04818 TYSY_HUMAN 1 313 DBREF 4UP1 C 1 313 UNP P04818 TYSY_HUMAN 1 313 DBREF 4UP1 D 1 313 UNP P04818 TYSY_HUMAN 1 313 SEQADV 4UP1 LEU A 2 UNP P04818 PRO 2 ENGINEERED MUTATION SEQADV 4UP1 LEU B 2 UNP P04818 PRO 2 ENGINEERED MUTATION SEQADV 4UP1 LEU C 2 UNP P04818 PRO 2 ENGINEERED MUTATION SEQADV 4UP1 LEU D 2 UNP P04818 PRO 2 ENGINEERED MUTATION SEQRES 1 A 313 MET LEU VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU SEQRES 2 A 313 PRO PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO SEQRES 3 A 313 PRO HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS SEQRES 4 A 313 ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP ARG THR GLY SEQRES 5 A 313 THR GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SEQRES 6 A 313 SER LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG SEQRES 7 A 313 VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE SEQRES 8 A 313 ILE LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS SEQRES 9 A 313 GLY VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE SEQRES 10 A 313 LEU ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP SEQRES 11 A 313 LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY SEQRES 12 A 313 ALA GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN SEQRES 13 A 313 GLY VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS SEQRES 14 A 313 THR ASN PRO ASP ASP ARG ARG ILE ILE MET CYS ALA TRP SEQRES 15 A 313 ASN PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO CYS SEQRES 16 A 313 HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SER GLU LEU SEQRES 17 A 313 SER CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU SEQRES 18 A 313 GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR SEQRES 19 A 313 TYR MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP SEQRES 20 A 313 PHE ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN SEQRES 21 A 313 HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO SEQRES 22 A 313 ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU SEQRES 23 A 313 LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU SEQRES 24 A 313 GLY TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA SEQRES 25 A 313 VAL SEQRES 1 B 313 MET LEU VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU SEQRES 2 B 313 PRO PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO SEQRES 3 B 313 PRO HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS SEQRES 4 B 313 ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP ARG THR GLY SEQRES 5 B 313 THR GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SEQRES 6 B 313 SER LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG SEQRES 7 B 313 VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE SEQRES 8 B 313 ILE LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS SEQRES 9 B 313 GLY VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE SEQRES 10 B 313 LEU ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP SEQRES 11 B 313 LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY SEQRES 12 B 313 ALA GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN SEQRES 13 B 313 GLY VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS SEQRES 14 B 313 THR ASN PRO ASP ASP ARG ARG ILE ILE MET CYS ALA TRP SEQRES 15 B 313 ASN PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO CYS SEQRES 16 B 313 HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SER GLU LEU SEQRES 17 B 313 SER CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU SEQRES 18 B 313 GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR SEQRES 19 B 313 TYR MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP SEQRES 20 B 313 PHE ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN SEQRES 21 B 313 HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO SEQRES 22 B 313 ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU SEQRES 23 B 313 LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU SEQRES 24 B 313 GLY TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA SEQRES 25 B 313 VAL SEQRES 1 C 313 MET LEU VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU SEQRES 2 C 313 PRO PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO SEQRES 3 C 313 PRO HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS SEQRES 4 C 313 ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP ARG THR GLY SEQRES 5 C 313 THR GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SEQRES 6 C 313 SER LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG SEQRES 7 C 313 VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE SEQRES 8 C 313 ILE LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS SEQRES 9 C 313 GLY VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE SEQRES 10 C 313 LEU ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP SEQRES 11 C 313 LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY SEQRES 12 C 313 ALA GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN SEQRES 13 C 313 GLY VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS SEQRES 14 C 313 THR ASN PRO ASP ASP ARG ARG ILE ILE MET CYS ALA TRP SEQRES 15 C 313 ASN PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO CYS SEQRES 16 C 313 HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SER GLU LEU SEQRES 17 C 313 SER CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU SEQRES 18 C 313 GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR SEQRES 19 C 313 TYR MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP SEQRES 20 C 313 PHE ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN SEQRES 21 C 313 HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO SEQRES 22 C 313 ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU SEQRES 23 C 313 LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU SEQRES 24 C 313 GLY TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA SEQRES 25 C 313 VAL SEQRES 1 D 313 MET LEU VAL ALA GLY SER GLU LEU PRO ARG ARG PRO LEU SEQRES 2 D 313 PRO PRO ALA ALA GLN GLU ARG ASP ALA GLU PRO ARG PRO SEQRES 3 D 313 PRO HIS GLY GLU LEU GLN TYR LEU GLY GLN ILE GLN HIS SEQRES 4 D 313 ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP ARG THR GLY SEQRES 5 D 313 THR GLY THR LEU SER VAL PHE GLY MET GLN ALA ARG TYR SEQRES 6 D 313 SER LEU ARG ASP GLU PHE PRO LEU LEU THR THR LYS ARG SEQRES 7 D 313 VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU LEU TRP PHE SEQRES 8 D 313 ILE LYS GLY SER THR ASN ALA LYS GLU LEU SER SER LYS SEQRES 9 D 313 GLY VAL LYS ILE TRP ASP ALA ASN GLY SER ARG ASP PHE SEQRES 10 D 313 LEU ASP SER LEU GLY PHE SER THR ARG GLU GLU GLY ASP SEQRES 11 D 313 LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG HIS PHE GLY SEQRES 12 D 313 ALA GLU TYR ARG ASP MET GLU SER ASP TYR SER GLY GLN SEQRES 13 D 313 GLY VAL ASP GLN LEU GLN ARG VAL ILE ASP THR ILE LYS SEQRES 14 D 313 THR ASN PRO ASP ASP ARG ARG ILE ILE MET CYS ALA TRP SEQRES 15 D 313 ASN PRO ARG ASP LEU PRO LEU MET ALA LEU PRO PRO CYS SEQRES 16 D 313 HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SER GLU LEU SEQRES 17 D 313 SER CYS GLN LEU TYR GLN ARG SER GLY ASP MET GLY LEU SEQRES 18 D 313 GLY VAL PRO PHE ASN ILE ALA SER TYR ALA LEU LEU THR SEQRES 19 D 313 TYR MET ILE ALA HIS ILE THR GLY LEU LYS PRO GLY ASP SEQRES 20 D 313 PHE ILE HIS THR LEU GLY ASP ALA HIS ILE TYR LEU ASN SEQRES 21 D 313 HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN ARG GLU PRO SEQRES 22 D 313 ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG LYS VAL GLU SEQRES 23 D 313 LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE GLN ILE GLU SEQRES 24 D 313 GLY TYR ASN PRO HIS PRO THR ILE LYS MET GLU MET ALA SEQRES 25 D 313 VAL HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 C 401 5 HET SO4 C 402 5 HET SO4 D 401 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 12(O4 S 2-) HELIX 1 1 GLY A 29 GLY A 44 1 16 HELIX 2 2 PHE A 80 LYS A 93 1 14 HELIX 3 3 ASN A 97 SER A 103 1 7 HELIX 4 4 ASP A 110 GLY A 113 5 4 HELIX 5 5 SER A 114 LEU A 121 1 8 HELIX 6 6 VAL A 134 PHE A 142 1 9 HELIX 7 7 ASP A 159 ASN A 171 1 13 HELIX 8 8 ASP A 186 MET A 190 5 5 HELIX 9 9 GLY A 222 THR A 241 1 20 HELIX 10 10 HIS A 261 ARG A 271 1 11 HELIX 11 11 LYS A 287 PHE A 291 5 5 HELIX 12 12 LYS A 292 GLU A 294 5 3 HELIX 13 13 GLY B 29 GLY B 44 1 16 HELIX 14 14 PHE B 80 LYS B 93 1 14 HELIX 15 15 ASN B 97 SER B 103 1 7 HELIX 16 16 ASP B 110 GLY B 113 5 4 HELIX 17 17 SER B 114 LEU B 121 1 8 HELIX 18 18 VAL B 134 PHE B 142 1 9 HELIX 19 19 ASP B 159 ASN B 171 1 13 HELIX 20 20 ASP B 186 MET B 190 5 5 HELIX 21 21 GLY B 222 THR B 241 1 20 HELIX 22 22 HIS B 261 ARG B 271 1 11 HELIX 23 23 LYS B 287 PHE B 291 5 5 HELIX 24 24 LYS B 292 GLU B 294 5 3 HELIX 25 25 GLY C 29 GLY C 44 1 16 HELIX 26 26 PHE C 80 LYS C 93 1 14 HELIX 27 27 ASN C 97 SER C 103 1 7 HELIX 28 28 TRP C 109 GLY C 113 5 5 HELIX 29 29 SER C 114 LEU C 121 1 8 HELIX 30 30 VAL C 134 PHE C 142 1 9 HELIX 31 31 ASP C 159 ASN C 171 1 13 HELIX 32 32 ASP C 186 MET C 190 5 5 HELIX 33 33 LEU C 221 THR C 241 1 21 HELIX 34 34 HIS C 261 ARG C 271 1 11 HELIX 35 35 LYS C 287 PHE C 291 5 5 HELIX 36 36 LYS C 292 GLU C 294 5 3 HELIX 37 37 GLY D 29 GLY D 44 1 16 HELIX 38 38 PHE D 80 LYS D 93 1 14 HELIX 39 39 ASN D 97 SER D 103 1 7 HELIX 40 40 TRP D 109 GLY D 113 5 5 HELIX 41 41 SER D 114 LEU D 121 1 8 HELIX 42 42 VAL D 134 PHE D 142 1 9 HELIX 43 43 ASP D 159 ASN D 171 1 13 HELIX 44 44 ASP D 186 MET D 190 5 5 HELIX 45 45 LEU D 221 THR D 241 1 21 HELIX 46 46 HIS D 261 ARG D 271 1 11 HELIX 47 47 LYS D 287 PHE D 291 5 5 HELIX 48 48 LYS D 292 GLU D 294 5 3 SHEET 1 AA 6 VAL A 45 ASP A 48 0 SHEET 2 AA 6 GLY A 54 SER A 66 -1 O THR A 55 N LYS A 47 SHEET 3 AA 6 LYS A 244 TYR A 258 -1 O PHE A 248 N TYR A 65 SHEET 4 AA 6 GLU A 207 ASP A 218 1 O LEU A 208 N GLY A 246 SHEET 5 AA 6 HIS A 196 VAL A 204 -1 N ALA A 197 O TYR A 213 SHEET 6 AA 6 ILE A 178 CYS A 180 -1 O MET A 179 N CYS A 199 SHEET 1 AB 2 LYS A 278 ILE A 281 0 SHEET 2 AB 2 PHE A 296 GLU A 299 -1 O GLN A 297 N ARG A 280 SHEET 1 BA 6 VAL B 45 ASP B 48 0 SHEET 2 BA 6 GLY B 54 SER B 66 -1 O THR B 55 N LYS B 47 SHEET 3 BA 6 LYS B 244 TYR B 258 -1 O PHE B 248 N TYR B 65 SHEET 4 BA 6 GLU B 207 ASP B 218 1 O LEU B 208 N GLY B 246 SHEET 5 BA 6 HIS B 196 VAL B 204 -1 N ALA B 197 O TYR B 213 SHEET 6 BA 6 ILE B 178 CYS B 180 -1 O MET B 179 N CYS B 199 SHEET 1 BB 2 LYS B 278 ILE B 281 0 SHEET 2 BB 2 PHE B 296 GLU B 299 -1 O GLN B 297 N ARG B 280 SHEET 1 CA 6 VAL C 45 ASP C 48 0 SHEET 2 CA 6 GLY C 54 SER C 66 -1 O THR C 55 N LYS C 47 SHEET 3 CA 6 LYS C 244 TYR C 258 -1 O PHE C 248 N TYR C 65 SHEET 4 CA 6 GLU C 207 ASP C 218 1 O LEU C 208 N GLY C 246 SHEET 5 CA 6 HIS C 196 VAL C 204 -1 N ALA C 197 O TYR C 213 SHEET 6 CA 6 ILE C 178 CYS C 180 -1 O MET C 179 N CYS C 199 SHEET 1 CB 2 LYS C 278 ILE C 281 0 SHEET 2 CB 2 PHE C 296 GLU C 299 -1 O GLN C 297 N ARG C 280 SHEET 1 DA 6 VAL D 45 ASP D 48 0 SHEET 2 DA 6 GLY D 54 SER D 66 -1 O THR D 55 N LYS D 47 SHEET 3 DA 6 LYS D 244 TYR D 258 -1 O PHE D 248 N TYR D 65 SHEET 4 DA 6 GLU D 207 ASP D 218 1 O LEU D 208 N GLY D 246 SHEET 5 DA 6 HIS D 196 VAL D 204 -1 N ALA D 197 O TYR D 213 SHEET 6 DA 6 ILE D 178 CYS D 180 -1 O MET D 179 N CYS D 199 SHEET 1 DB 2 LYS D 278 ILE D 281 0 SHEET 2 DB 2 PHE D 296 GLU D 299 -1 O GLN D 297 N ARG D 280 SITE 1 AC1 5 ARG A 50 LEU A 192 ARG A 215 ARG B 175 SITE 2 AC1 5 ARG B 176 SITE 1 AC2 10 TYR A 135 TRP A 139 MET A 179 CYS A 180 SITE 2 AC2 10 ALA A 181 HIS A 196 ALA A 197 LEU A 198 SITE 3 AC2 10 CYS A 199 TYR A 230 SITE 1 AC3 4 ARG A 42 CYS A 43 GLY A 44 VAL A 45 SITE 1 AC4 1 PHE A 225 SITE 1 AC5 4 ARG A 175 ARG A 176 ARG B 50 ARG B 215 SITE 1 AC6 6 ARG B 46 GLY B 52 THR B 53 GLY B 54 SITE 2 AC6 6 LEU D 41 LYS D 266 SITE 1 AC7 3 ARG B 46 LYS B 47 ASP B 48 SITE 1 AC8 9 TYR B 135 TRP B 139 MET B 179 ALA B 181 SITE 2 AC8 9 HIS B 196 ALA B 197 LEU B 198 CYS B 199 SITE 3 AC8 9 TYR B 230 SITE 1 AC9 4 LYS B 77 GLY B 220 HIS B 261 PRO B 264 SITE 1 BC1 4 ARG C 175 ARG C 176 ARG D 50 ARG D 215 SITE 1 BC2 4 ASP C 173 ARG D 46 LYS D 47 ASP D 48 SITE 1 BC3 4 ARG C 50 ARG C 215 ARG D 175 ARG D 176 CRYST1 91.790 106.460 101.500 90.00 108.99 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010894 0.000000 0.003749 0.00000 SCALE2 0.000000 0.009393 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010419 0.00000