HEADER OXIDOREDUCTASE 22-MAR-15 4UGI TITLE STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX WITH TITLE 2 N1-(6-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL)ETHYL)PYRIDIN-2-YL)-N1,N2- TITLE 3 DIMETHYLETHANE-1,2-DIAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NOSOXY-LIKE PROTEIN; COMPND 5 EC: 1.14.13.165; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 ATCC: 23857; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NITRIC OXIDE SYNTHASE, OXIDOREDUCTASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.K.HOLDEN,T.L.POULOS REVDAT 5 20-DEC-23 4UGI 1 REMARK REVDAT 4 06-FEB-19 4UGI 1 REMARK REVDAT 3 30-JAN-19 4UGI 1 REMARK REVDAT 2 22-JUL-15 4UGI 1 JRNL REVDAT 1 24-JUN-15 4UGI 0 JRNL AUTH J.K.HOLDEN,D.DEJAM,M.C.LEWIS,H.HUANG,S.KANG,Q.JING,F.XUE, JRNL AUTH 2 R.B.SILVERMAN,T.L.POULOS JRNL TITL INHIBITOR BOUND CRYSTAL STRUCTURES OF BACTERIAL NITRIC OXIDE JRNL TITL 2 SYNTHASE. JRNL REF BIOCHEMISTRY V. 54 4075 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26062720 JRNL DOI 10.1021/ACS.BIOCHEM.5B00431 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9161 - 4.6283 0.99 2718 144 0.1566 0.1859 REMARK 3 2 4.6283 - 3.6743 1.00 2576 146 0.1353 0.1635 REMARK 3 3 3.6743 - 3.2101 1.00 2594 133 0.1643 0.1782 REMARK 3 4 3.2101 - 2.9167 1.00 2555 123 0.1672 0.2121 REMARK 3 5 2.9167 - 2.7077 1.00 2546 130 0.1695 0.2325 REMARK 3 6 2.7077 - 2.5481 1.00 2541 119 0.1564 0.2022 REMARK 3 7 2.5481 - 2.4205 1.00 2491 158 0.1580 0.2223 REMARK 3 8 2.4205 - 2.3151 1.00 2511 151 0.1603 0.2153 REMARK 3 9 2.3151 - 2.2260 1.00 2485 158 0.1651 0.2012 REMARK 3 10 2.2260 - 2.1492 1.00 2532 112 0.1691 0.2161 REMARK 3 11 2.1492 - 2.0820 1.00 2515 121 0.1850 0.2193 REMARK 3 12 2.0820 - 2.0225 1.00 2519 124 0.1946 0.2356 REMARK 3 13 2.0225 - 1.9692 1.00 2479 135 0.1951 0.2250 REMARK 3 14 1.9692 - 1.9212 1.00 2507 148 0.2168 0.2027 REMARK 3 15 1.9212 - 1.8775 1.00 2501 138 0.2320 0.2970 REMARK 3 16 1.8775 - 1.8376 1.00 2467 155 0.2894 0.3083 REMARK 3 17 1.8376 - 1.8008 0.99 2463 135 0.3008 0.3336 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3119 REMARK 3 ANGLE : 1.232 4228 REMARK 3 CHIRALITY : 0.076 434 REMARK 3 PLANARITY : 0.004 541 REMARK 3 DIHEDRAL : 13.932 1155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.6676 19.8184 23.0205 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.1661 REMARK 3 T33: 0.1870 T12: -0.0147 REMARK 3 T13: 0.0261 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 0.9862 L22: 1.6654 REMARK 3 L33: 1.1614 L12: 0.1740 REMARK 3 L13: 0.2056 L23: -0.4803 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: 0.1358 S13: 0.0759 REMARK 3 S21: -0.2047 S22: 0.0813 S23: -0.0615 REMARK 3 S31: -0.0955 S32: 0.0616 S33: -0.0128 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4UGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1290063337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45386 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4D3T REMARK 200 REMARK 200 REMARK: CC ONE HALF FOR FULL DATASET AT 0.998. CC ONE HALF FOR REMARK 200 HIGH RESOLUTION SHELL AT 0.669 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MM BIS-TRIS METHANE, 40 MM CITRIC REMARK 280 ACID, 20% PEG3350, 1.9% 1-PROPANOL, PH 7.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.22000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.50650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.22000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.50650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2291 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2204 O HOH A 2205 2.08 REMARK 500 O HOH A 2045 O HOH A 2205 2.14 REMARK 500 O HOH A 2209 O HOH A 2212 2.15 REMARK 500 NZ LYS A 259 O HOH A 2227 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 117 -69.19 -103.36 REMARK 500 LYS A 118 40.98 -108.48 REMARK 500 ALA A 233 71.67 -159.06 REMARK 500 ARG A 247 -66.38 -126.13 REMARK 500 ARG A 254 -124.88 -118.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 66 SG REMARK 620 2 HEM A 901 NA 94.6 REMARK 620 3 HEM A 901 NB 91.6 87.8 REMARK 620 4 HEM A 901 NC 95.1 169.7 88.6 REMARK 620 5 HEM A 901 ND 100.2 89.6 168.0 91.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SKO A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 912 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UG5 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(2-(5-(2-(2-AMINO-6-METHYLPYRIDIN- 4-YL)ETHYL)PYRIDIN-3-YL) REMARK 900 ETHYL)-4-METHYLPYRIDIN-2- AMINE REMARK 900 RELATED ID: 4UG6 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-(PYRIDINE-3,5-DIYLDIETHANE-2,1- DIYL)BIS(4-METHYLPYRIDIN- REMARK 900 2-AMINE) REMARK 900 RELATED ID: 4UG7 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3,5-BIS(2-(6-AMINO-4-METHYLPYRIDIN- 2-YL)ETHYL)BENZONITRILE REMARK 900 RELATED ID: 4UG8 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(5-((3R,4R)-4-((6-AZANYL-4-METHYL -PYRIDIN-2-YL)METHYL) REMARK 900 PYRROLIDIN-3-YL)OXYPENTYL)-4- METHYL-PYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UG9 RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-((4-(3-AMINOPROPYL)BENZENE-1,3- DIYL)DIETHANE-2,1-DIYL) REMARK 900 BIS(4-METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4UGA RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-((3-(((2-(3-FLUOROPHENYL)ETHYL)AMINO )METHYL)PHENOXY)METHYL)- REMARK 900 4-METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGB RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(((5-(((2-(3-FLUOROPHENYL)ETHYL)AMINO )METHYL)PYRIDIN-3-YL) REMARK 900 OXY)METHYL)-4-METHYLPYRIDIN-2- AMINE REMARK 900 RELATED ID: 4UGC RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6,6'-(((2S)-3-AMINOPROPANE-1,2-DIYL) BIS(OXYMETHANEDIYL))BIS(4- REMARK 900 METHYLPYRIDIN-2-AMINE) REMARK 900 RELATED ID: 4UGD RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-((((2S)-1-AMINO-4-((6-AMINO-4- METHYLPYRIDIN-2-YL)METHOXY) REMARK 900 BUTAN-2-YL)OXY)METHYL)-4 -METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGE RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 4-METHYL-6-((3-(PIPERIDIN-4-YLMETHOXY) PHENOXY)METHYL)PYRIDIN- REMARK 900 2-AMINE REMARK 900 RELATED ID: 4UGF RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-((((3S, 5R)-5-(((6-AMINO-4- METHYLPYRIDIN-2-YL)METHOXY) REMARK 900 METHYL)PYRROLIDIN-3-YL)OXY )METHYL)-4-METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGG RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH (R)-6-(2-AMINO-2-(3-(2-(6-AMINO-4 -METHYLPYRIDIN-2-YL)ETHYL) REMARK 900 PHENYL)ETHYL)-4-METHYLPYRIDIN -2-AMINE REMARK 900 RELATED ID: 4UGH RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(3-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)PHENYL)-N1,N2- REMARK 900 DIMETHYLETHANE-1,2-DIAMINE REMARK 900 RELATED ID: 4UGJ RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 3-(2-(6-AMINO-4-METHYLPYRIDIN-2-YL) ETHYL)-5-(METHYL(2- REMARK 900 (METHYLAMINO)ETHYL)AMINO)BENZONITRILE REMARK 900 RELATED ID: 4UGK RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH 6-(2-(5-(2-(DIMETHYLAMINO)ETHYL)PYRIDIN -3-YL)ETHYL)-4- REMARK 900 METHYLPYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGL RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(3-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)-5-FLUOROPHENYL)- REMARK 900 N1-CYCLOPROPYL-N2-METHYLETHANE -1,2-DIAMINE REMARK 900 RELATED ID: 4UGM RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N,N'-(ETHANE-1,2-DIYLDIBENZENE-3,1- DIYL)DITHIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGN RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH (S)-N-(3-(((PYRROLIDIN-2-YLMETHYL)AMINO )METHYL)PHENYL) REMARK 900 THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGO RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(4-(2-(ETHYL(3-(((E)-IMINO(THIOPHEN -2-YL)METHYL)AMINO) REMARK 900 BENZYL)AMINO)ETHYL)PHENYL) THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGP RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N',N'-(((2R)-3-AMINOPROPANE-1,2-DIYL ) REMARK 900 BIS(OXYMETHANEDIYLBENZENE-3,1-DIYL))DITHIOPHENE-2- CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGQ RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N,N''-(((2S)-3-AMINOPROPANE-1,2-DIYL ) REMARK 900 BIS(OXYMETHANEDIYLBENZENE-3,1-DIYL))DITHIOPHENE-2- CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGR RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(3-(((2S,4S)-4-((3-((C-THIOPHEN-2 -YLCARBONIMIDOYL)AMINO) REMARK 900 PHENYL)METHOXY)PYRROLIDIN-2-YL) METHOXYMETHYL)PHENYL)THIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGS RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N,N'-(ETHANE-1,2-DIYLBIS(OXYBENZENE-3 ,1-DIYL))DITHIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGT RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(3-((PYRROLIDIN-3-YLOXY)METHYL)PHENYL )THIOPHENE-2- REMARK 900 CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGU RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N'-(4-(((2S,4R)-4-(3-((C-THIOPHEN-2 -YLCARBONIMIDOYL)AMINO) REMARK 900 PHENOXY)PYRROLIDIN-2-YL)METHOXY) PHENYL)THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGV RELATED DB: PDB REMARK 900 STRUCTURE OF Y357F BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN REMARK 900 COMPLEX WITH ARGININE AND 5,6,7,8- TETRAHYDROBIOPTERIN REMARK 900 RELATED ID: 4UGW RELATED DB: PDB REMARK 900 STRUCTURE OF Y357F BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN REMARK 900 COMPLEX WITH 6-(5-((3R,4R)-4-((6- AZANYL-4-METHYL-PYRIDIN-2-YL) REMARK 900 METHYL)PYRROLIDIN-3-YL )OXYPENTYL)-4-METHYL-PYRIDIN-2-AMINE REMARK 900 RELATED ID: 4UGX RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N-(3-((ETHYL(2-(3-FLUOROPHENYL)ETHYL) AMINO)METHYL)PHENYL) REMARK 900 THIOPHENE-2-CARBOXIMIDAMIDE REMARK 900 RELATED ID: 4UGY RELATED DB: PDB REMARK 900 STRUCTURE OF BACILLUS SUBTILIS NITRIC OXIDE SYNTHASE IN COMPLEX REMARK 900 WITH N1-(5-(2-(6-AMINO-4-METHYLPYRIDIN-2- YL)ETHYL)PYRIDIN-3-YL)-N1, REMARK 900 N2-DIMETHYLETHANE-1,2- DIAMINE DBREF 4UGI A 1 363 UNP O34453 NOSO_BACSU 1 363 SEQADV 4UGI ALA A 25 UNP O34453 GLU 25 ENGINEERED MUTATION SEQADV 4UGI ALA A 26 UNP O34453 GLU 26 ENGINEERED MUTATION SEQADV 4UGI ALA A 316 UNP O34453 GLU 316 ENGINEERED MUTATION SEQRES 1 A 363 MET GLU GLU LYS GLU ILE LEU TRP ASN GLU ALA LYS ALA SEQRES 2 A 363 PHE ILE ALA ALA CYS TYR GLN GLU LEU GLY LYS ALA ALA SEQRES 3 A 363 GLU VAL LYS ASP ARG LEU ALA ASP ILE LYS SER GLU ILE SEQRES 4 A 363 ASP LEU THR GLY SER TYR VAL HIS THR LYS GLU GLU LEU SEQRES 5 A 363 GLU HIS GLY ALA LYS MET ALA TRP ARG ASN SER ASN ARG SEQRES 6 A 363 CYS ILE GLY ARG LEU PHE TRP ASN SER LEU ASN VAL ILE SEQRES 7 A 363 ASP ARG ARG ASP VAL ARG THR LYS GLU GLU VAL ARG ASP SEQRES 8 A 363 ALA LEU PHE HIS HIS ILE GLU THR ALA THR ASN ASN GLY SEQRES 9 A 363 LYS ILE ARG PRO THR ILE THR ILE PHE PRO PRO GLU GLU SEQRES 10 A 363 LYS GLY GLU LYS GLN VAL GLU ILE TRP ASN HIS GLN LEU SEQRES 11 A 363 ILE ARG TYR ALA GLY TYR GLU SER ASP GLY GLU ARG ILE SEQRES 12 A 363 GLY ASP PRO ALA SER CYS SER LEU THR ALA ALA CYS GLU SEQRES 13 A 363 GLU LEU GLY TRP ARG GLY GLU ARG THR ASP PHE ASP LEU SEQRES 14 A 363 LEU PRO LEU ILE PHE ARG MET LYS GLY ASP GLU GLN PRO SEQRES 15 A 363 VAL TRP TYR GLU LEU PRO ARG SER LEU VAL ILE GLU VAL SEQRES 16 A 363 PRO ILE THR HIS PRO ASP ILE GLU ALA PHE SER ASP LEU SEQRES 17 A 363 GLU LEU LYS TRP TYR GLY VAL PRO ILE ILE SER ASP MET SEQRES 18 A 363 LYS LEU GLU VAL GLY GLY ILE HIS TYR ASN ALA ALA PRO SEQRES 19 A 363 PHE ASN GLY TRP TYR MET GLY THR GLU ILE GLY ALA ARG SEQRES 20 A 363 ASN LEU ALA ASP GLU LYS ARG TYR ASP LYS LEU LYS LYS SEQRES 21 A 363 VAL ALA SER VAL ILE GLY ILE ALA ALA ASP TYR ASN THR SEQRES 22 A 363 ASP LEU TRP LYS ASP GLN ALA LEU VAL GLU LEU ASN LYS SEQRES 23 A 363 ALA VAL LEU HIS SER TYR LYS LYS GLN GLY VAL SER ILE SEQRES 24 A 363 VAL ASP HIS HIS THR ALA ALA SER GLN PHE LYS ARG PHE SEQRES 25 A 363 GLU GLU GLN ALA GLU GLU ALA GLY ARG LYS LEU THR GLY SEQRES 26 A 363 ASP TRP THR TRP LEU ILE PRO PRO ILE SER PRO ALA ALA SEQRES 27 A 363 THR HIS ILE PHE HIS ARG SER TYR ASP ASN SER ILE VAL SEQRES 28 A 363 LYS PRO ASN TYR PHE TYR GLN ASP LYS PRO TYR GLU HET HEM A 901 43 HET CL A 903 1 HET SKO A 904 22 HET IMD A 905 5 HET GOL A 906 6 HET GOL A 907 6 HET GOL A 908 6 HET POL A 909 4 HET POL A 910 4 HET POL A 912 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CL CHLORIDE ION HETNAM SKO N'-[6-[2-(6-AZANYL-4-METHYL-PYRIDIN-2-YL)ETHYL]PYRIDIN- HETNAM 2 SKO 2-YL]-N,N'-DIMETHYL-ETHANE-1,2-DIAMINE HETNAM IMD IMIDAZOLE HETNAM GOL GLYCEROL HETNAM POL N-PROPANOL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN POL 1-PROPONOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CL CL 1- FORMUL 4 SKO C17 H25 N5 FORMUL 5 IMD C3 H5 N2 1+ FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 POL 3(C3 H8 O) FORMUL 12 HOH *313(H2 O) HELIX 1 1 GLU A 2 LEU A 22 1 21 HELIX 2 2 LYS A 24 ALA A 26 5 3 HELIX 3 3 GLU A 27 GLY A 43 1 17 HELIX 4 4 THR A 48 ASN A 62 1 15 HELIX 5 5 GLY A 68 LEU A 75 5 8 HELIX 6 6 THR A 85 ASN A 102 1 18 HELIX 7 7 ASN A 103 LYS A 105 5 3 HELIX 8 8 SER A 148 LEU A 158 1 11 HELIX 9 9 PRO A 188 VAL A 192 5 5 HELIX 10 10 ILE A 202 GLU A 209 5 8 HELIX 11 11 GLY A 241 ALA A 246 1 6 HELIX 12 12 LYS A 257 ILE A 265 1 9 HELIX 13 13 TYR A 271 ASP A 274 5 4 HELIX 14 14 LEU A 275 GLY A 296 1 22 HELIX 15 15 ASP A 301 ALA A 319 1 19 HELIX 16 16 ASP A 326 ILE A 331 1 6 HELIX 17 17 SER A 335 THR A 339 5 5 HELIX 18 18 THR A 339 ARG A 344 5 6 SHEET 1 AA 4 ASN A 76 ASP A 79 0 SHEET 2 AA 4 THR A 109 ILE A 112 1 O ILE A 110 N ILE A 78 SHEET 3 AA 4 PHE A 235 ASN A 236 -1 O ASN A 236 N THR A 109 SHEET 4 AA 4 ILE A 217 ILE A 218 -1 O ILE A 218 N PHE A 235 SHEET 1 AB 3 VAL A 123 ILE A 125 0 SHEET 2 AB 3 LEU A 172 MET A 176 -1 O ARG A 175 N GLU A 124 SHEET 3 AB 3 VAL A 183 TYR A 185 -1 O VAL A 183 N PHE A 174 SHEET 1 AC 2 GLY A 135 SER A 138 0 SHEET 2 AC 2 GLU A 141 GLY A 144 -1 O GLU A 141 N SER A 138 SHEET 1 AD 2 GLU A 194 PRO A 196 0 SHEET 2 AD 2 LYS A 211 TYR A 213 -1 O TRP A 212 N VAL A 195 SHEET 1 AE 3 ILE A 228 TYR A 230 0 SHEET 2 AE 3 LYS A 222 VAL A 225 -1 O LEU A 223 N TYR A 230 SHEET 3 AE 3 ASN A 354 PHE A 356 -1 O ASN A 354 N GLU A 224 SHEET 1 AF 2 TYR A 239 MET A 240 0 SHEET 2 AF 2 ILE A 299 VAL A 300 1 N VAL A 300 O TYR A 239 LINK SG CYS A 66 FE HEM A 901 1555 1555 2.54 CISPEP 1 LYS A 352 PRO A 353 0 -0.89 SITE 1 AC1 15 TRP A 60 SER A 63 ARG A 65 CYS A 66 SITE 2 AC1 15 PHE A 235 ASN A 236 GLY A 237 TRP A 238 SITE 3 AC1 15 GLU A 243 TYR A 355 TYR A 357 SKO A 904 SITE 4 AC1 15 GOL A 906 HOH A2045 HOH A2311 SITE 1 AC2 3 GLN A 129 TYR A 239 ASN A 248 SITE 1 AC3 10 HIS A 128 ILE A 218 GLY A 237 TRP A 238 SITE 2 AC3 10 TYR A 239 GLU A 243 TRP A 329 TYR A 357 SITE 3 AC3 10 HEM A 901 HOH A2111 SITE 1 AC4 5 THR A 328 TRP A 329 PHE A 342 POL A 910 SITE 2 AC4 5 HOH A2312 SITE 1 AC5 7 MET A 221 TYR A 355 PHE A 356 TYR A 357 SITE 2 AC5 7 HEM A 901 HOH A2035 HOH A2313 SITE 1 AC6 9 GLU A 156 TRP A 160 ARG A 161 SER A 298 SITE 2 AC6 9 ILE A 299 HOH A2133 HOH A2134 HOH A2138 SITE 3 AC6 9 HOH A2258 SITE 1 AC7 6 VAL A 183 TRP A 184 TYR A 185 ASP A 270 SITE 2 AC7 6 ASN A 272 HOH A2236 SITE 1 AC8 5 GLY A 144 ASP A 166 ARG A 254 LYS A 257 SITE 2 AC8 5 HOH A2124 SITE 1 AC9 5 TRP A 327 THR A 328 ARG A 344 IMD A 905 SITE 2 AC9 5 HOH A2300 SITE 1 BC1 3 ASP A 79 ARG A 81 HOH A2055 CRYST1 80.440 95.013 63.030 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015865 0.00000