HEADER HYDROLASE/HYDROLASE INHIBITOR 19-JUN-14 4TSR TITLE THE COMPLEX STRUCTURE OF MUTANT PHYTASE WITH IHS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC APPA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOANHYDRIDE PHOSPHOHYDROLASE,4-PHYTASE; COMPND 5 EC: 3.1.3.2,3.1.3.26; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS CBS 7435; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 981350 KEYWDS PHYTASE, SYNCHROTRON RADIATION, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.H.WU,C.C.CHEN,C.H.HUANG,R.T.GUO REVDAT 2 27-SEP-23 4TSR 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 2 1 LINK REVDAT 1 06-MAY-15 4TSR 0 JRNL AUTH T.H.WU,C.C.CHEN,C.H.HUANG,R.T.GUO JRNL TITL THE COMPLEX STRUCTURE OF MUTANT PHYTASE WITH IHS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1653 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : -1.12000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.640 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3158 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3018 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4322 ; 1.792 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6941 ; 0.925 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 397 ; 6.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;33.598 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;17.375 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.697 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3556 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 694 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 1.142 ; 1.457 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1593 ; 1.138 ; 1.457 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1989 ; 1.817 ; 2.177 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1990 ; 1.818 ; 2.178 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1564 ; 2.046 ; 1.744 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1560 ; 2.026 ; 1.742 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2328 ; 3.052 ; 2.531 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3806 ; 5.410 ;12.870 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3702 ; 5.242 ;12.512 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 505 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8012 -4.5073 -21.3597 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: 0.0398 REMARK 3 T33: 0.0010 T12: 0.0017 REMARK 3 T13: -0.0023 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.1514 L22: 0.1858 REMARK 3 L33: 0.4034 L12: 0.0091 REMARK 3 L13: -0.0779 L23: 0.1480 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.0110 S13: 0.0044 REMARK 3 S21: 0.0243 S22: 0.0251 S23: -0.0119 REMARK 3 S31: 0.0195 S32: 0.0098 S33: -0.0085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4TSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000202114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23694 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1DKQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M NICL2, 0.1 M HEPES, 20% PEG REMARK 280 3350 AND 2% PEG 8000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.75000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 182 REMARK 465 LYS A 183 REMARK 465 GLN A 184 REMARK 465 ASP A 185 REMARK 465 GLU A 186 REMARK 465 SER A 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 648 O HOH A 669 1.95 REMARK 500 O HOH A 654 O HOH A 669 2.01 REMARK 500 OD1 ASP A 69 O HOH A 703 2.13 REMARK 500 N LEU A 6 O HOH A 814 2.15 REMARK 500 O HOH A 778 O HOH A 893 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 35 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 147 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 236 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 265 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 265 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 105 72.93 -150.70 REMARK 500 ASN A 126 106.70 -174.01 REMARK 500 HIS A 282 149.50 -176.87 REMARK 500 GLN A 287 -125.66 -130.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 710 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 890 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 891 DISTANCE = 7.23 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 ASP A 90 OD2 87.1 REMARK 620 3 HIS A 303 NE2 78.7 90.1 REMARK 620 4 HOH A 755 O 82.0 165.0 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 113 NE2 REMARK 620 2 HOH A 605 O 85.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 503 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 154 OD1 REMARK 620 2 HIS A 158 NE2 95.9 REMARK 620 3 HOH A 631 O 83.6 96.8 REMARK 620 4 HOH A 656 O 171.7 91.9 92.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 504 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 250 NE2 REMARK 620 2 ASP A 325 OD1 96.9 REMARK 620 3 ASP A 325 OD2 99.7 54.9 REMARK 620 4 THR A 327 O 175.6 87.4 81.7 REMARK 620 5 THR A 327 OG1 112.9 87.6 133.2 68.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHS A 505 DBREF 4TSR A 1 410 UNP P07102 PPA_ECOLI 23 432 SEQADV 4TSR THR A 89 UNP P07102 VAL 111 ENGINEERED MUTATION SEQADV 4TSR VAL A 116 UNP P07102 ALA 138 ENGINEERED MUTATION SEQADV 4TSR ALA A 206 UNP P07102 SER 228 ENGINEERED MUTATION SEQRES 1 A 410 GLN SER GLU PRO GLU LEU LYS LEU GLU SER VAL VAL ILE SEQRES 2 A 410 VAL SER ARG HIS GLY VAL ARG ALA PRO THR LYS ALA THR SEQRES 3 A 410 GLN LEU MET GLN ASP VAL THR PRO ASP ALA TRP PRO THR SEQRES 4 A 410 TRP PRO VAL LYS LEU GLY TRP LEU THR PRO ARG GLY GLY SEQRES 5 A 410 GLU LEU ILE ALA TYR LEU GLY HIS TYR GLN ARG GLN ARG SEQRES 6 A 410 LEU VAL ALA ASP GLY LEU LEU ALA LYS LYS GLY CYS PRO SEQRES 7 A 410 GLN SER GLY GLN VAL ALA ILE ILE ALA ASP THR ASP GLU SEQRES 8 A 410 ARG THR ARG LYS THR GLY GLU ALA PHE ALA ALA GLY LEU SEQRES 9 A 410 ALA PRO ASP CYS ALA ILE THR VAL HIS THR GLN VAL ASP SEQRES 10 A 410 THR SER SER PRO ASP PRO LEU PHE ASN PRO LEU LYS THR SEQRES 11 A 410 GLY VAL CYS GLN LEU ASP ASN ALA ASN VAL THR ASP ALA SEQRES 12 A 410 ILE LEU SER ARG ALA GLY GLY SER ILE ALA ASP PHE THR SEQRES 13 A 410 GLY HIS ARG GLN THR ALA PHE ARG GLU LEU GLU ARG VAL SEQRES 14 A 410 LEU ASN PHE PRO GLN SER ASN LEU CYS LEU LYS ARG GLU SEQRES 15 A 410 LYS GLN ASP GLU SER CYS SER LEU THR GLN ALA LEU PRO SEQRES 16 A 410 SER GLU LEU LYS VAL SER ALA ASP ASN VAL ALA LEU THR SEQRES 17 A 410 GLY ALA VAL SER LEU ALA SER MET LEU THR GLU ILE PHE SEQRES 18 A 410 LEU LEU GLN GLN ALA GLN GLY MET PRO GLU PRO GLY TRP SEQRES 19 A 410 GLY ARG ILE THR ASP SER HIS GLN TRP ASN THR LEU LEU SEQRES 20 A 410 SER LEU HIS ASN ALA GLN PHE TYR LEU LEU GLN ARG THR SEQRES 21 A 410 PRO GLU VAL ALA ARG SER ARG ALA THR PRO LEU LEU ASP SEQRES 22 A 410 LEU ILE LYS THR ALA LEU THR PRO HIS PRO PRO GLN LYS SEQRES 23 A 410 GLN ALA TYR GLY VAL THR LEU PRO THR SER VAL LEU PHE SEQRES 24 A 410 ILE ALA GLY HIS ASP THR ASN LEU ALA ASN LEU GLY GLY SEQRES 25 A 410 ALA LEU GLU LEU ASN TRP THR LEU PRO GLY GLN PRO ASP SEQRES 26 A 410 ASN THR PRO PRO GLY GLY GLU LEU VAL PHE GLU ARG TRP SEQRES 27 A 410 ARG ARG LEU SER ASP ASN SER GLN TRP ILE GLN VAL SER SEQRES 28 A 410 LEU VAL PHE GLN THR LEU GLN GLN MET ARG ASP LYS THR SEQRES 29 A 410 PRO LEU SER LEU ASN THR PRO PRO GLY GLU VAL LYS LEU SEQRES 30 A 410 THR LEU ALA GLY CYS GLU GLU ARG ASN ALA GLN GLY MET SEQRES 31 A 410 CYS SER LEU ALA GLY PHE THR GLN ILE VAL ASN GLU ALA SEQRES 32 A 410 ARG ILE PRO ALA CYS SER LEU HET NI A 501 1 HET NI A 502 1 HET NI A 503 1 HET NI A 504 1 HET IHS A 505 36 HETNAM NI NICKEL (II) ION HETNAM IHS D-MYO-INOSITOL-HEXASULPHATE FORMUL 2 NI 4(NI 2+) FORMUL 6 IHS C6 H12 O24 S6 FORMUL 7 HOH *299(H2 O) HELIX 1 AA1 THR A 26 VAL A 32 1 7 HELIX 2 AA2 THR A 48 ASP A 69 1 22 HELIX 3 AA3 ASP A 90 ALA A 105 1 16 HELIX 4 AA4 ASP A 136 ALA A 148 1 13 HELIX 5 AA5 SER A 151 HIS A 158 1 8 HELIX 6 AA6 ARG A 159 ASN A 171 1 13 HELIX 7 AA7 PHE A 172 GLN A 174 5 3 HELIX 8 AA8 SER A 175 ARG A 181 1 7 HELIX 9 AA9 SER A 189 LEU A 194 1 6 HELIX 10 AB1 THR A 208 GLN A 227 1 20 HELIX 11 AB2 GLU A 231 ARG A 236 5 6 HELIX 12 AB3 ASP A 239 GLN A 258 1 20 HELIX 13 AB4 THR A 260 ALA A 268 1 9 HELIX 14 AB5 ALA A 268 THR A 280 1 13 HELIX 15 AB6 ALA A 288 GLY A 290 5 3 HELIX 16 AB7 HIS A 303 GLU A 315 1 13 HELIX 17 AB8 THR A 356 ASP A 362 1 7 HELIX 18 AB9 LEU A 393 ARG A 404 1 12 HELIX 19 AC1 ILE A 405 SER A 409 5 5 SHEET 1 AA1 7 VAL A 112 HIS A 113 0 SHEET 2 AA1 7 VAL A 83 ALA A 87 1 N ILE A 85 O HIS A 113 SHEET 3 AA1 7 VAL A 297 GLY A 302 1 O PHE A 299 N ILE A 86 SHEET 4 AA1 7 LYS A 7 ARG A 16 1 N SER A 15 O GLY A 302 SHEET 5 AA1 7 GLU A 332 ARG A 340 -1 O PHE A 335 N VAL A 12 SHEET 6 AA1 7 SER A 345 PHE A 354 -1 O VAL A 353 N GLU A 332 SHEET 7 AA1 7 GLY A 373 LYS A 376 -1 O VAL A 375 N LEU A 352 SHEET 1 AA2 7 VAL A 112 HIS A 113 0 SHEET 2 AA2 7 VAL A 83 ALA A 87 1 N ILE A 85 O HIS A 113 SHEET 3 AA2 7 VAL A 297 GLY A 302 1 O PHE A 299 N ILE A 86 SHEET 4 AA2 7 LYS A 7 ARG A 16 1 N SER A 15 O GLY A 302 SHEET 5 AA2 7 GLU A 332 ARG A 340 -1 O PHE A 335 N VAL A 12 SHEET 6 AA2 7 SER A 345 PHE A 354 -1 O VAL A 353 N GLU A 332 SHEET 7 AA2 7 CYS A 391 SER A 392 -1 O CYS A 391 N ILE A 348 SHEET 1 AA3 2 LEU A 198 VAL A 200 0 SHEET 2 AA3 2 VAL A 205 LEU A 207 -1 O ALA A 206 N LYS A 199 SHEET 1 AA4 2 GLN A 285 LYS A 286 0 SHEET 2 AA4 2 THR A 292 LEU A 293 -1 O LEU A 293 N GLN A 285 SSBOND 1 CYS A 77 CYS A 108 1555 1555 2.08 SSBOND 2 CYS A 133 CYS A 408 1555 1555 2.08 SSBOND 3 CYS A 382 CYS A 391 1555 1555 2.11 LINK OD2 ASP A 88 NI NI A 501 1555 1555 2.26 LINK OD2 ASP A 90 NI NI A 501 1555 1555 2.43 LINK NE2 HIS A 113 NI NI A 502 1555 1555 2.19 LINK OD1 ASP A 154 NI NI A 503 1555 1555 2.23 LINK NE2 HIS A 158 NI NI A 503 1555 1555 2.13 LINK NE2 HIS A 250 NI NI A 504 1555 1555 2.58 LINK NE2 HIS A 303 NI NI A 501 1555 1555 2.41 LINK OD1 ASP A 325 NI NI A 504 1555 1555 2.20 LINK OD2 ASP A 325 NI NI A 504 1555 1555 2.47 LINK O THR A 327 NI NI A 504 1555 1555 2.56 LINK OG1 THR A 327 NI NI A 504 1555 1555 2.49 LINK NI NI A 501 O HOH A 755 1555 1555 2.47 LINK NI NI A 502 O HOH A 605 1555 1555 2.44 LINK NI NI A 503 O HOH A 631 1555 1555 2.14 LINK NI NI A 503 O HOH A 656 1555 1555 2.36 CISPEP 1 LEU A 293 PRO A 294 0 -5.44 SITE 1 AC1 5 ASP A 88 ASP A 90 HIS A 303 IHS A 505 SITE 2 AC1 5 HOH A 755 SITE 1 AC2 2 HIS A 113 HOH A 605 SITE 1 AC3 4 ASP A 154 HIS A 158 HOH A 631 HOH A 656 SITE 1 AC4 6 ARG A 16 GLU A 219 HIS A 250 ASP A 304 SITE 2 AC4 6 ASP A 325 THR A 327 SITE 1 AC5 13 ARG A 16 HIS A 17 ARG A 20 THR A 23 SITE 2 AC5 13 LYS A 24 ARG A 92 MET A 216 HIS A 250 SITE 3 AC5 13 PHE A 254 HIS A 303 ASP A 304 NI A 501 SITE 4 AC5 13 HOH A 898 CRYST1 63.796 47.500 65.632 90.00 100.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015675 0.000000 0.002907 0.00000 SCALE2 0.000000 0.021053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015496 0.00000