HEADER SIGNALING PROTEIN 29-MAY-14 4TL3 TITLE MECHANISTIC INSIGHTS FROM THE CRYSTAL STRUCTURE OF AN INWARD PROTON- TITLE 2 TRANSPORTING ANABAENA SENSORY RHODOPSIN MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANABAENA SENSORY RHODOPSIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP.; SOURCE 3 ORGANISM_TAXID: 103690; SOURCE 4 STRAIN: PCC 7120 / UTEX 2576; SOURCE 5 GENE: ALR3165; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSMEMBRANE, PHOTORECEPTOR, PROTON PUMP, BACTERIAL RHODOPSIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.H.DONG,H.LUECKE REVDAT 5 27-SEP-23 4TL3 1 COMPND REMARK HETNAM FORMUL REVDAT 5 2 1 ATOM REVDAT 4 11-DEC-19 4TL3 1 REMARK REVDAT 3 06-SEP-17 4TL3 1 SOURCE REMARK REVDAT 2 29-OCT-14 4TL3 1 HETNAM REVDAT 1 16-JUL-14 4TL3 0 JRNL AUTH B.H.DONG,H.LUECKE JRNL TITL MECHANISTIC INSIGHTS FROM THE CRYSTAL STRUCTURE OF AN INWARD JRNL TITL 2 PROTON-TRANSPORTINGANABAENA SENSORY RHODOPSIN MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 26889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1449 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1970 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 475 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.232 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.228 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4118 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5446 ; 1.203 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 4.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;35.234 ;22.245 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 583 ;13.909 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.810 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2788 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 1.033 ; 2.350 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2153 ; 1.709 ; 3.513 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2390 ; 1.365 ; 2.936 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6633 ; 5.606 ;21.788 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 226 B 1 226 314 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4TL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL, ASYMMETRIC REMARK 200 CUT 4.965 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 33.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 1.930 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1XIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, PH 5.6, MAGNESIUM CHLORIDE, REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.63250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.69300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.15050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.69300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.63250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.15050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 57 REMARK 465 GLN A 58 REMARK 465 GLY A 59 REMARK 465 LYS A 60 REMARK 465 VAL A 61 REMARK 465 GLU A 62 REMARK 465 ALA A 63 REMARK 465 ALA A 64 REMARK 465 GLY A 65 REMARK 465 GLN A 66 REMARK 465 GLN B 58 REMARK 465 GLY B 59 REMARK 465 LYS B 60 REMARK 465 VAL B 61 REMARK 465 GLU B 62 REMARK 465 ALA B 63 REMARK 465 ALA B 64 REMARK 465 GLY B 65 REMARK 465 GLN B 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 148 -91.02 -120.40 REMARK 500 ASN B 148 -87.26 -119.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEE A 303 REMARK 610 PEE A 304 REMARK 610 PEE A 305 REMARK 610 PEE A 306 REMARK 610 PEE A 308 REMARK 610 PEE A 309 REMARK 610 PEE A 310 REMARK 610 PEE A 311 REMARK 610 PEE A 312 REMARK 610 PEE A 313 REMARK 610 PEE A 314 REMARK 610 PEE A 315 REMARK 610 PEE A 316 REMARK 610 PEE A 317 REMARK 610 PEE A 319 REMARK 610 PEE A 321 REMARK 610 PEE B 302 REMARK 610 PEE B 303 REMARK 610 PEE B 304 REMARK 610 PEE B 305 REMARK 610 PEE B 306 REMARK 610 PEE B 307 REMARK 610 PEE B 308 REMARK 610 PEE B 309 REMARK 610 PEE B 310 REMARK 610 PEE B 312 REMARK 610 PEE B 313 REMARK 610 PEE B 314 REMARK 610 PEE B 315 REMARK 610 PEE B 317 REMARK 610 PEE B 318 REMARK 610 PEE B 319 REMARK 610 PEE B 320 REMARK 610 PEE B 321 REMARK 610 PEE B 322 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEE B 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET B 301 DBREF 4TL3 A 1 226 UNP Q8YSC4 Q8YSC4_NOSS1 1 226 DBREF 4TL3 B 1 226 UNP Q8YSC4 Q8YSC4_NOSS1 1 226 SEQADV 4TL3 GLU A 217 UNP Q8YSC4 ASP 217 ENGINEERED MUTATION SEQADV 4TL3 GLU B 217 UNP Q8YSC4 ASP 217 ENGINEERED MUTATION SEQRES 1 A 226 MET ASN LEU GLU SER LEU LEU HIS TRP ILE TYR VAL ALA SEQRES 2 A 226 GLY MET THR ILE GLY ALA LEU HIS PHE TRP SER LEU SER SEQRES 3 A 226 ARG ASN PRO ARG GLY VAL PRO GLN TYR GLU TYR LEU VAL SEQRES 4 A 226 ALA MET PHE ILE PRO ILE TRP SER GLY LEU ALA TYR MET SEQRES 5 A 226 ALA MET ALA ILE ASP GLN GLY LYS VAL GLU ALA ALA GLY SEQRES 6 A 226 GLN ILE ALA HIS TYR ALA ARG TYR ILE ASP TRP MET VAL SEQRES 7 A 226 THR THR PRO LEU LEU LEU LEU SER LEU SER TRP THR ALA SEQRES 8 A 226 MET GLN PHE ILE LYS LYS ASP TRP THR LEU ILE GLY PHE SEQRES 9 A 226 LEU MET SER THR GLN ILE VAL VAL ILE THR SER GLY LEU SEQRES 10 A 226 ILE ALA ASP LEU SER GLU ARG ASP TRP VAL ARG TYR LEU SEQRES 11 A 226 TRP TYR ILE CYS GLY VAL CYS ALA PHE LEU ILE ILE LEU SEQRES 12 A 226 TRP GLY ILE TRP ASN PRO LEU ARG ALA LYS THR ARG THR SEQRES 13 A 226 GLN SER SER GLU LEU ALA ASN LEU TYR ASP LYS LEU VAL SEQRES 14 A 226 THR TYR PHE THR VAL LEU TRP ILE GLY TYR PRO ILE VAL SEQRES 15 A 226 TRP ILE ILE GLY PRO SER GLY PHE GLY TRP ILE ASN GLN SEQRES 16 A 226 THR ILE ASP THR PHE LEU PHE CYS LEU LEU PRO PHE PHE SEQRES 17 A 226 SER LYS VAL GLY PHE SER PHE LEU GLU LEU HIS GLY LEU SEQRES 18 A 226 ARG ASN LEU ASN ASP SEQRES 1 B 226 MET ASN LEU GLU SER LEU LEU HIS TRP ILE TYR VAL ALA SEQRES 2 B 226 GLY MET THR ILE GLY ALA LEU HIS PHE TRP SER LEU SER SEQRES 3 B 226 ARG ASN PRO ARG GLY VAL PRO GLN TYR GLU TYR LEU VAL SEQRES 4 B 226 ALA MET PHE ILE PRO ILE TRP SER GLY LEU ALA TYR MET SEQRES 5 B 226 ALA MET ALA ILE ASP GLN GLY LYS VAL GLU ALA ALA GLY SEQRES 6 B 226 GLN ILE ALA HIS TYR ALA ARG TYR ILE ASP TRP MET VAL SEQRES 7 B 226 THR THR PRO LEU LEU LEU LEU SER LEU SER TRP THR ALA SEQRES 8 B 226 MET GLN PHE ILE LYS LYS ASP TRP THR LEU ILE GLY PHE SEQRES 9 B 226 LEU MET SER THR GLN ILE VAL VAL ILE THR SER GLY LEU SEQRES 10 B 226 ILE ALA ASP LEU SER GLU ARG ASP TRP VAL ARG TYR LEU SEQRES 11 B 226 TRP TYR ILE CYS GLY VAL CYS ALA PHE LEU ILE ILE LEU SEQRES 12 B 226 TRP GLY ILE TRP ASN PRO LEU ARG ALA LYS THR ARG THR SEQRES 13 B 226 GLN SER SER GLU LEU ALA ASN LEU TYR ASP LYS LEU VAL SEQRES 14 B 226 THR TYR PHE THR VAL LEU TRP ILE GLY TYR PRO ILE VAL SEQRES 15 B 226 TRP ILE ILE GLY PRO SER GLY PHE GLY TRP ILE ASN GLN SEQRES 16 B 226 THR ILE ASP THR PHE LEU PHE CYS LEU LEU PRO PHE PHE SEQRES 17 B 226 SER LYS VAL GLY PHE SER PHE LEU GLU LEU HIS GLY LEU SEQRES 18 B 226 ARG ASN LEU ASN ASP HET RET A 301 20 HET PEE A 303 14 HET PEE A 304 8 HET PEE A 305 11 HET PEE A 306 17 HET PEE A 308 12 HET PEE A 309 17 HET PEE A 310 17 HET PEE A 311 11 HET PEE A 312 15 HET PEE A 313 11 HET PEE A 314 17 HET PEE A 315 8 HET PEE A 316 6 HET PEE A 317 14 HET PEE A 319 18 HET PEE A 321 8 HET RET B 301 20 HET PEE B 302 15 HET PEE B 303 11 HET PEE B 304 15 HET PEE B 305 9 HET PEE B 306 12 HET PEE B 307 15 HET PEE B 308 11 HET PEE B 309 12 HET PEE B 310 9 HET PEE B 312 18 HET PEE B 313 5 HET PEE B 314 14 HET PEE B 315 6 HET PEE B 317 12 HET PEE B 318 16 HET PEE B 319 18 HET PEE B 320 6 HET PEE B 321 10 HET PEE B 322 17 HETNAM RET RETINAL HETNAM PEE 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE HETSYN PEE DOPE FORMUL 3 RET 2(C20 H28 O) FORMUL 4 PEE 35(C41 H78 N O8 P) FORMUL 40 HOH *109(H2 O) HELIX 1 AA1 ASN A 2 ASN A 28 1 27 HELIX 2 AA2 PRO A 33 ILE A 56 1 24 HELIX 3 AA3 HIS A 69 MET A 92 1 24 HELIX 4 AA4 ASP A 98 SER A 122 1 25 HELIX 5 AA5 ARG A 124 ASN A 148 1 25 HELIX 6 AA6 ASN A 148 LYS A 153 1 6 HELIX 7 AA7 THR A 154 GLN A 157 5 4 HELIX 8 AA8 SER A 158 GLY A 186 1 29 HELIX 9 AA9 ASN A 194 VAL A 211 1 18 HELIX 10 AB1 VAL A 211 ASP A 226 1 16 HELIX 11 AB2 ASN B 2 ASN B 28 1 27 HELIX 12 AB3 PRO B 33 ASP B 57 1 25 HELIX 13 AB4 HIS B 69 MET B 92 1 24 HELIX 14 AB5 ASP B 98 SER B 122 1 25 HELIX 15 AB6 ARG B 124 ASN B 148 1 25 HELIX 16 AB7 ASN B 148 LYS B 153 1 6 HELIX 17 AB8 THR B 154 GLN B 157 5 4 HELIX 18 AB9 SER B 158 GLY B 186 1 29 HELIX 19 AC1 ASN B 194 VAL B 211 1 18 HELIX 20 AC2 VAL B 211 ASP B 226 1 16 LINK NZ LYS A 210 C15 RET A 301 1555 1555 1.35 LINK NZ LYS B 210 C15 RET B 301 1555 1555 1.35 SITE 1 AC1 9 TRP A 76 THR A 80 LEU A 83 VAL A 112 SITE 2 AC1 9 TYR A 132 PHE A 139 TRP A 176 TYR A 179 SITE 3 AC1 9 LYS A 210 SITE 1 AC2 3 MET A 1 TRP A 9 THR A 16 SITE 1 AC3 2 LYS A 167 PEE A 317 SITE 1 AC4 1 PHE A 42 SITE 1 AC5 3 TYR A 70 MET A 77 TRP B 126 SITE 1 AC6 1 PEE B 304 SITE 1 AC7 1 TRP A 46 SITE 1 AC8 3 TRP A 99 THR A 100 SER A 107 SITE 1 AC9 2 TRP A 23 ARG A 27 SITE 1 AD1 3 TRP A 23 ILE A 45 GLY A 48 SITE 1 AD2 1 TRP A 147 SITE 1 AD3 1 TRP A 126 SITE 1 AD4 2 GLY A 178 PEE B 312 SITE 1 AD5 2 PHE A 208 PEE A 304 SITE 1 AD6 5 PEE A 321 TRP B 99 THR B 100 SER B 107 SITE 2 AD6 5 PEE B 302 SITE 1 AD7 4 TRP A 144 ASN A 148 PRO A 149 PEE A 319 SITE 1 AD8 4 PEE A 319 MET B 77 TRP B 99 PEE B 310 SITE 1 AD9 1 PEE B 318 SITE 1 AE1 5 ILE A 17 PHE A 207 PHE A 215 PEE A 308 SITE 2 AE1 5 TRP B 192 SITE 1 AE2 1 THR B 170 SITE 1 AE3 2 TRP B 147 ARG B 151 SITE 1 AE4 3 MET B 1 TRP B 9 THR B 16 SITE 1 AE5 2 PHE B 42 TRP B 46 SITE 1 AE6 5 LEU A 3 THR A 196 PHE A 200 TRP B 23 SITE 2 AE6 5 ARG B 27 SITE 1 AE7 4 TRP A 126 TRP A 131 TYR B 70 PEE B 302 SITE 1 AE8 3 VAL A 174 PEE A 315 MET B 1 SITE 1 AE9 1 TYR B 171 SITE 1 AF1 1 ILE B 141 SITE 1 AF2 5 PHE B 94 LEU B 224 ASN B 225 HOH B 628 SITE 2 AF2 5 HOH B 643 SITE 1 AF3 5 TRP A 192 ILE B 17 PHE B 215 HIS B 219 SITE 2 AF3 5 PEE B 303 SITE 1 AF4 2 LEU B 205 PEE B 320 SITE 1 AF5 2 VAL B 174 PEE B 319 SITE 1 AF6 2 TYR B 129 ILE B 133 SITE 1 AF7 18 TYR B 11 SER B 47 ASP B 75 TRP B 76 SITE 2 AF7 18 THR B 79 THR B 80 VAL B 112 PHE B 139 SITE 3 AF7 18 TRP B 176 TYR B 179 TRP B 183 PRO B 206 SITE 4 AF7 18 PHE B 207 PHE B 208 SER B 209 VAL B 211 SITE 5 AF7 18 SER B 214 HOH B 502 CRYST1 55.265 104.301 111.386 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008978 0.00000