HEADER ISOMERASE/RNA 28-JUN-13 4LGT TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF RLUB IN COMPLEX WITH A TITLE 2 21-NUCLEOTIDE RNA SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-251; COMPND 5 EC: 5.4.99.22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: STEM-LOOP OF 23S RRNA; COMPND 9 CHAIN: E, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: RLUB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE)3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET47 MODIFIED; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: 21-MER WITH THE SAME SEQUENCE AS STEM-LOOP NT 2587- SOURCE 14 2607 FROM E. COLI 23S RRNA SYNTHESIZED WITH U2605 SUBSTITUTED BY 5- SOURCE 15 FLUOR-U2605 KEYWDS BETA SHEET ALPHA-BETA PROTEIN, RRNA MODIFICATION PEUDOURIDINE KEYWDS 2 SYNTHASE, E. COLI RIBOSOMAL RNA, ISOMERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.CZUDNOCHOWSKI,J.S.FINER-MOORE,R.M.STROUD REVDAT 6 06-DEC-23 4LGT 1 REMARK REVDAT 5 20-SEP-23 4LGT 1 SEQADV LINK REVDAT 4 17-JUL-19 4LGT 1 REMARK LINK REVDAT 3 15-NOV-17 4LGT 1 REMARK REVDAT 2 26-FEB-14 4LGT 1 JRNL REVDAT 1 20-NOV-13 4LGT 0 JRNL AUTH N.CZUDNOCHOWSKI,G.W.ASHLEY,D.V.SANTI,A.ALIAN,J.FINER-MOORE, JRNL AUTH 2 R.M.STROUD JRNL TITL THE MECHANISM OF PSEUDOURIDINE SYNTHASES FROM A COVALENT JRNL TITL 2 COMPLEX WITH RNA, AND ALTERNATE SPECIFICITY FOR U2605 VERSUS JRNL TITL 3 U2604 BETWEEN CLOSE HOMOLOGS. JRNL REF NUCLEIC ACIDS RES. V. 42 2037 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24214967 JRNL DOI 10.1093/NAR/GKT1050 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 126729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4806 - 3.1327 0.94 9419 154 0.1703 0.1967 REMARK 3 2 3.1327 - 2.4866 0.97 9427 157 0.1649 0.1806 REMARK 3 3 2.4866 - 2.1723 0.96 9351 149 0.1514 0.1809 REMARK 3 4 2.1723 - 1.9737 0.96 9320 143 0.1433 0.1876 REMARK 3 5 1.9737 - 1.8322 0.96 9238 149 0.1439 0.1697 REMARK 3 6 1.8322 - 1.7242 0.94 9211 146 0.1443 0.1810 REMARK 3 7 1.7242 - 1.6379 0.94 9027 145 0.1502 0.2008 REMARK 3 8 1.6379 - 1.5666 0.93 8953 143 0.1658 0.1906 REMARK 3 9 1.5666 - 1.5062 0.91 8811 141 0.1871 0.2352 REMARK 3 10 1.5062 - 1.4543 0.90 8724 139 0.2092 0.2580 REMARK 3 11 1.4543 - 1.4088 0.89 8513 134 0.2331 0.2871 REMARK 3 12 1.4088 - 1.3685 0.87 8361 134 0.2578 0.2769 REMARK 3 13 1.3685 - 1.3325 0.86 8250 132 0.2801 0.3018 REMARK 3 14 1.3325 - 1.3000 0.85 8133 125 0.3031 0.3222 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5042 REMARK 3 ANGLE : 1.309 7048 REMARK 3 CHIRALITY : 0.069 815 REMARK 3 PLANARITY : 0.008 768 REMARK 3 DIHEDRAL : 13.488 2053 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115869 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.85400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4LAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% (V/V) POLYPROPYLENE GLYCOL 400, REMARK 280 12% (V/V) 1-PROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.3K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.47000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.47000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 ALA D 63 REMARK 465 GLU D 64 REMARK 465 GLN D 65 REMARK 465 SER D 251 REMARK 465 A F 2587 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 MET D 1 CG SD CE REMARK 470 LYS D 34 CG CD CE NZ REMARK 470 ARG D 99 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 173 CG CD CE NZ REMARK 470 ARG D 194 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 222 CG CD CE NZ REMARK 470 TYR D 239 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 212 O HOH A 475 1.54 REMARK 500 HH22 ARG D 158 O HOH D 327 1.59 REMARK 500 NH2 ARG D 158 O HOH D 327 2.04 REMARK 500 O HOH A 632 O HOH E 2819 2.06 REMARK 500 OE1 GLU A 163 O HOH A 413 2.08 REMARK 500 O HOH A 534 O HOH A 587 2.10 REMARK 500 O HOH A 573 O HOH A 623 2.10 REMARK 500 O HOH F 2713 O HOH F 2720 2.10 REMARK 500 O HOH E 2754 O HOH E 2782 2.11 REMARK 500 OP2 A F 2602 O HOH F 2729 2.11 REMARK 500 O HOH A 433 O HOH A 467 2.11 REMARK 500 O HOH A 395 O HOH A 459 2.12 REMARK 500 O HOH E 2758 O HOH E 2797 2.13 REMARK 500 O HOH E 2800 O HOH E 2815 2.14 REMARK 500 O ALA D 10 O HOH D 338 2.15 REMARK 500 NH2 ARG A 158 O HOH A 447 2.17 REMARK 500 O HOH A 603 O HOH A 608 2.17 REMARK 500 O HOH A 476 O HOH A 609 2.19 REMARK 500 O HOH E 2744 O HOH E 2818 2.19 REMARK 500 O HOH E 2816 O HOH E 2824 2.19 REMARK 500 O HOH A 425 O HOH A 574 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H61 A E 2587 O HOH A 515 1565 1.56 REMARK 500 OP1 A E 2587 O HOH A 439 4556 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 102 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 178 115.44 -160.91 REMARK 500 ILE A 180 47.11 -91.91 REMARK 500 CYS D 67 93.25 -65.37 REMARK 500 GLU D 178 -145.92 -160.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LAB RELATED DB: PDB REMARK 900 STRUCTURE OF APO RLUB CATALYTIC DOMAIN DBREF 4LGT A 1 251 UNP P37765 RLUB_ECOLI 1 251 DBREF 4LGT D 1 251 UNP P37765 RLUB_ECOLI 1 251 DBREF 4LGT E 2587 2607 PDB 4LGT 4LGT 2587 2607 DBREF 4LGT F 2587 2607 PDB 4LGT 4LGT 2587 2607 SEQADV 4LGT GLY A -3 UNP P37765 EXPRESSION TAG SEQADV 4LGT PRO A -2 UNP P37765 EXPRESSION TAG SEQADV 4LGT GLY A -1 UNP P37765 EXPRESSION TAG SEQADV 4LGT SER A 0 UNP P37765 EXPRESSION TAG SEQADV 4LGT GLY D -3 UNP P37765 EXPRESSION TAG SEQADV 4LGT PRO D -2 UNP P37765 EXPRESSION TAG SEQADV 4LGT GLY D -1 UNP P37765 EXPRESSION TAG SEQADV 4LGT SER D 0 UNP P37765 EXPRESSION TAG SEQRES 1 A 255 GLY PRO GLY SER MET SER GLU LYS LEU GLN LYS VAL LEU SEQRES 2 A 255 ALA ARG ALA GLY HIS GLY SER ARG ARG GLU ILE GLU SER SEQRES 3 A 255 ILE ILE GLU ALA GLY ARG VAL SER VAL ASP GLY LYS ILE SEQRES 4 A 255 ALA LYS LEU GLY ASP ARG VAL GLU VAL THR PRO GLY LEU SEQRES 5 A 255 LYS ILE ARG ILE ASP GLY HIS LEU ILE SER VAL ARG GLU SEQRES 6 A 255 SER ALA GLU GLN ILE CYS ARG VAL LEU ALA TYR TYR LYS SEQRES 7 A 255 PRO GLU GLY GLU LEU CYS THR ARG ASN ASP PRO GLU GLY SEQRES 8 A 255 ARG PRO THR VAL PHE ASP ARG LEU PRO LYS LEU ARG GLY SEQRES 9 A 255 ALA ARG TRP ILE ALA VAL GLY ARG LEU ASP VAL ASN THR SEQRES 10 A 255 OCS GLY LEU LEU LEU PHE THR THR ASP GLY GLU LEU ALA SEQRES 11 A 255 ASN ARG LEU MET HIS PRO SER ARG GLU VAL GLU ARG GLU SEQRES 12 A 255 TYR ALA VAL ARG VAL PHE GLY GLN VAL ASP ASP ALA LYS SEQRES 13 A 255 LEU ARG ASP LEU SER ARG GLY VAL GLN LEU GLU ASP GLY SEQRES 14 A 255 PRO ALA ALA PHE LYS THR ILE LYS PHE SER GLY GLY GLU SEQRES 15 A 255 GLY ILE ASN GLN TRP TYR ASN VAL THR LEU THR GLU GLY SEQRES 16 A 255 ARG ASN ARG GLU VAL ARG ARG LEU TRP GLU ALA VAL GLY SEQRES 17 A 255 VAL GLN VAL SER ARG LEU ILE ARG VAL ARG TYR GLY ASP SEQRES 18 A 255 ILE PRO LEU PRO LYS GLY LEU PRO ARG GLY GLY TRP THR SEQRES 19 A 255 GLU LEU ASP LEU ALA GLN THR ASN TYR LEU ARG GLU LEU SEQRES 20 A 255 VAL GLU LEU PRO PRO GLU THR SER SEQRES 1 E 21 A G A A C G U C G U G A G SEQRES 2 E 21 A C A G U FHU C G SEQRES 1 D 255 GLY PRO GLY SER MET SER GLU LYS LEU GLN LYS VAL LEU SEQRES 2 D 255 ALA ARG ALA GLY HIS GLY SER ARG ARG GLU ILE GLU SER SEQRES 3 D 255 ILE ILE GLU ALA GLY ARG VAL SER VAL ASP GLY LYS ILE SEQRES 4 D 255 ALA LYS LEU GLY ASP ARG VAL GLU VAL THR PRO GLY LEU SEQRES 5 D 255 LYS ILE ARG ILE ASP GLY HIS LEU ILE SER VAL ARG GLU SEQRES 6 D 255 SER ALA GLU GLN ILE CYS ARG VAL LEU ALA TYR TYR LYS SEQRES 7 D 255 PRO GLU GLY GLU LEU CYS THR ARG ASN ASP PRO GLU GLY SEQRES 8 D 255 ARG PRO THR VAL PHE ASP ARG LEU PRO LYS LEU ARG GLY SEQRES 9 D 255 ALA ARG TRP ILE ALA VAL GLY ARG LEU ASP VAL ASN THR SEQRES 10 D 255 OCS GLY LEU LEU LEU PHE THR THR ASP GLY GLU LEU ALA SEQRES 11 D 255 ASN ARG LEU MET HIS PRO SER ARG GLU VAL GLU ARG GLU SEQRES 12 D 255 TYR ALA VAL ARG VAL PHE GLY GLN VAL ASP ASP ALA LYS SEQRES 13 D 255 LEU ARG ASP LEU SER ARG GLY VAL GLN LEU GLU ASP GLY SEQRES 14 D 255 PRO ALA ALA PHE LYS THR ILE LYS PHE SER GLY GLY GLU SEQRES 15 D 255 GLY ILE ASN GLN TRP TYR ASN VAL THR LEU THR GLU GLY SEQRES 16 D 255 ARG ASN ARG GLU VAL ARG ARG LEU TRP GLU ALA VAL GLY SEQRES 17 D 255 VAL GLN VAL SER ARG LEU ILE ARG VAL ARG TYR GLY ASP SEQRES 18 D 255 ILE PRO LEU PRO LYS GLY LEU PRO ARG GLY GLY TRP THR SEQRES 19 D 255 GLU LEU ASP LEU ALA GLN THR ASN TYR LEU ARG GLU LEU SEQRES 20 D 255 VAL GLU LEU PRO PRO GLU THR SER SEQRES 1 F 21 A G A A C G U C G U G A G SEQRES 2 F 21 A C A G U FHU C G MODRES 4LGT OCS A 114 CYS CYSTEINESULFONIC ACID MODRES 4LGT FHU E 2605 U MODRES 4LGT OCS D 114 CYS CYSTEINESULFONIC ACID MODRES 4LGT FHU F 2605 U HET OCS A 114 28 HET FHU E2605 31 HET OCS D 114 28 HET FHU F2605 33 HETNAM OCS CYSTEINESULFONIC ACID HETNAM FHU (5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'- HETNAM 2 FHU MONOPHOSPHATE FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 2 FHU 2(C9 H14 F N2 O10 P) FORMUL 5 HOH *630(H2 O) HELIX 1 1 LEU A 5 ALA A 12 1 8 HELIX 2 2 SER A 16 ALA A 26 1 11 HELIX 3 3 ASP A 122 HIS A 131 1 10 HELIX 4 4 PRO A 132 GLU A 135 5 4 HELIX 5 5 ASP A 149 GLY A 159 1 11 HELIX 6 6 ARG A 194 VAL A 203 1 10 HELIX 7 7 ASP A 233 VAL A 244 1 12 HELIX 8 8 LEU D 5 ALA D 12 1 8 HELIX 9 9 SER D 16 ALA D 26 1 11 HELIX 10 10 ASP D 122 HIS D 131 1 10 HELIX 11 11 PRO D 132 GLU D 135 5 4 HELIX 12 12 ASP D 149 GLY D 159 1 11 HELIX 13 13 ARG D 194 VAL D 203 1 10 HELIX 14 14 ASP D 233 VAL D 244 1 12 SHEET 1 A 2 GLU A 3 LYS A 4 0 SHEET 2 A 2 ARG A 41 VAL A 42 -1 O VAL A 42 N GLU A 3 SHEET 1 B 4 LYS A 34 ILE A 35 0 SHEET 2 B 4 VAL A 29 VAL A 31 -1 N VAL A 31 O LYS A 34 SHEET 3 B 4 ILE A 50 ILE A 52 -1 O ARG A 51 N SER A 30 SHEET 4 B 4 HIS A 55 LEU A 56 -1 O HIS A 55 N ILE A 52 SHEET 1 C 4 ILE A 104 ALA A 105 0 SHEET 2 C 4 OCS A 114 THR A 120 -1 O THR A 120 N ILE A 104 SHEET 3 C 4 GLN A 206 TYR A 215 1 O ARG A 212 N LEU A 116 SHEET 4 C 4 ILE A 218 PRO A 219 -1 O ILE A 218 N TYR A 215 SHEET 1 D 7 THR A 171 GLU A 178 0 SHEET 2 D 7 ASN A 181 LEU A 188 -1 O TRP A 183 N GLY A 176 SHEET 3 D 7 ARG A 138 PHE A 145 -1 N VAL A 142 O TYR A 184 SHEET 4 D 7 GLN A 206 TYR A 215 -1 O GLN A 206 N PHE A 145 SHEET 5 D 7 OCS A 114 THR A 120 1 N LEU A 116 O ARG A 212 SHEET 6 D 7 VAL A 69 LYS A 74 -1 N LYS A 74 O GLY A 115 SHEET 7 D 7 TRP A 229 GLU A 231 -1 O THR A 230 N ALA A 71 SHEET 1 E 2 VAL A 160 LEU A 162 0 SHEET 2 E 2 GLY A 165 ALA A 167 -1 O ALA A 167 N VAL A 160 SHEET 1 F 2 GLU D 3 LYS D 4 0 SHEET 2 F 2 ARG D 41 VAL D 42 -1 O VAL D 42 N GLU D 3 SHEET 1 G 4 LYS D 34 ILE D 35 0 SHEET 2 G 4 VAL D 29 VAL D 31 -1 N VAL D 31 O LYS D 34 SHEET 3 G 4 ILE D 50 ILE D 52 -1 O ARG D 51 N SER D 30 SHEET 4 G 4 HIS D 55 ILE D 57 -1 O ILE D 57 N ILE D 50 SHEET 1 H 4 ILE D 104 ALA D 105 0 SHEET 2 H 4 OCS D 114 THR D 120 -1 O THR D 120 N ILE D 104 SHEET 3 H 4 GLN D 206 TYR D 215 1 O ARG D 212 N OCS D 114 SHEET 4 H 4 ILE D 218 PRO D 219 -1 O ILE D 218 N TYR D 215 SHEET 1 I 7 THR D 171 GLY D 176 0 SHEET 2 I 7 ASN D 181 LEU D 188 -1 O TRP D 183 N GLY D 176 SHEET 3 I 7 ARG D 138 PHE D 145 -1 N VAL D 144 O GLN D 182 SHEET 4 I 7 GLN D 206 TYR D 215 -1 O ILE D 211 N ALA D 141 SHEET 5 I 7 OCS D 114 THR D 120 1 N OCS D 114 O ARG D 212 SHEET 6 I 7 VAL D 69 LYS D 74 -1 N LEU D 70 O PHE D 119 SHEET 7 I 7 TRP D 229 GLU D 231 -1 O THR D 230 N ALA D 71 SHEET 1 J 2 VAL D 160 LEU D 162 0 SHEET 2 J 2 GLY D 165 ALA D 167 -1 O ALA D 167 N VAL D 160 LINK C THR A 113 N AOCS A 114 1555 1555 1.31 LINK C THR A 113 N BOCS A 114 1555 1555 1.34 LINK C AOCS A 114 N GLY A 115 1555 1555 1.32 LINK C BOCS A 114 N GLY A 115 1555 1555 1.33 LINK OH TYR A 140 C6 FHU E2605 1555 1555 1.45 LINK O3' U E2604 P FHU E2605 1555 1555 1.61 LINK O3' FHU E2605 P C E2606 1555 1555 1.60 LINK C THR D 113 N AOCS D 114 1555 1555 1.32 LINK C THR D 113 N BOCS D 114 1555 1555 1.34 LINK C AOCS D 114 N GLY D 115 1555 1555 1.33 LINK C BOCS D 114 N GLY D 115 1555 1555 1.33 LINK O3' U F2604 P FHU F2605 1555 1555 1.61 LINK O3' FHU F2605 P C F2606 1555 1555 1.60 CRYST1 80.940 42.200 169.430 90.00 102.61 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012355 0.000000 0.002764 0.00000 SCALE2 0.000000 0.023697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006048 0.00000