HEADER CELL ADHESION 28-JUN-13 4LGO TITLE CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN 1 OF VOMPD FROM BARTONELLA TITLE 2 QUINTANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: VOMPD; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA QUINTANA; SOURCE 3 ORGANISM_TAXID: 803; SOURCE 4 STRAIN: TOULOUSE; SOURCE 5 GENE: VOMPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, TRIMERIC AUTOTRANSPORTER ADHESIN, KEYWDS 4 AUTOTRANSPORTER ADHESIN, OUTER MEMBRANE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 20-SEP-23 4LGO 1 REMARK SEQADV REVDAT 3 24-JAN-18 4LGO 1 JRNL REVDAT 2 15-NOV-17 4LGO 1 REMARK REVDAT 1 05-MAR-14 4LGO 0 JRNL AUTH D.M.DRANOW,J.ABENDROTH,T.E.EDWARDS,D.LORIMER JRNL TITL CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN 1 OF VOMPD FROM JRNL TITL 2 BARTONELLA QUINTANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 46707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2364 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : 2.71000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.512 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2630 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2596 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3562 ; 1.376 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5936 ; 0.736 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 6.576 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;43.788 ;27.686 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;12.371 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.898 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 425 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3147 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 569 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1417 ; 1.118 ; 1.452 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1416 ; 1.118 ; 1.450 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1768 ; 1.875 ; 2.163 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9388 12.8448 61.3039 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1456 REMARK 3 T33: 0.1418 T12: 0.0469 REMARK 3 T13: 0.0372 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.5927 L22: 0.6320 REMARK 3 L33: 4.0153 L12: -0.1791 REMARK 3 L13: 0.4587 L23: 0.3004 REMARK 3 S TENSOR REMARK 3 S11: 0.1295 S12: -0.3410 S13: 0.1869 REMARK 3 S21: -0.0107 S22: 0.0717 S23: 0.0249 REMARK 3 S31: -0.4342 S32: -0.5393 S33: -0.2012 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1388 4.7226 31.8344 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.0398 REMARK 3 T33: 0.1269 T12: -0.0178 REMARK 3 T13: -0.0252 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4782 L22: 0.2355 REMARK 3 L33: 4.4969 L12: -0.2031 REMARK 3 L13: -0.8197 L23: -0.1554 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.0582 S13: -0.0300 REMARK 3 S21: -0.0649 S22: 0.0130 S23: 0.0941 REMARK 3 S31: 0.2076 S32: -0.1460 S33: -0.0471 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5298 7.4013 2.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.2116 T22: 0.1087 REMARK 3 T33: 0.0859 T12: 0.0719 REMARK 3 T13: -0.0315 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.1911 L22: 4.8256 REMARK 3 L33: 8.2202 L12: 1.1529 REMARK 3 L13: -1.5755 L23: 3.2209 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: 0.1335 S13: -0.0390 REMARK 3 S21: -0.3076 S22: 0.0191 S23: -0.1005 REMARK 3 S31: -0.1980 S32: -0.2946 S33: 0.0024 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 223 B 238 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7464 2.3399 65.8048 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.4717 REMARK 3 T33: 0.1659 T12: -0.0945 REMARK 3 T13: -0.0101 T23: 0.0971 REMARK 3 L TENSOR REMARK 3 L11: 1.7108 L22: 2.5870 REMARK 3 L33: 23.3157 L12: 0.0308 REMARK 3 L13: 1.6476 L23: -1.9835 REMARK 3 S TENSOR REMARK 3 S11: 0.2511 S12: -0.3444 S13: -0.2191 REMARK 3 S21: 0.2103 S22: 0.3504 S23: 0.1393 REMARK 3 S31: 0.7768 S32: -1.3286 S33: -0.6015 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 239 B 322 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9377 3.7711 40.8003 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.0496 REMARK 3 T33: 0.1349 T12: -0.0177 REMARK 3 T13: -0.0295 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6508 L22: 0.1138 REMARK 3 L33: 3.9930 L12: -0.0785 REMARK 3 L13: -0.3749 L23: -0.0175 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: 0.0155 S13: -0.0238 REMARK 3 S21: -0.0257 S22: 0.0394 S23: 0.0232 REMARK 3 S31: 0.2462 S32: -0.3664 S33: -0.0660 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 323 B 338 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0186 7.5591 5.1752 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.1821 REMARK 3 T33: 0.0220 T12: 0.0434 REMARK 3 T13: -0.0012 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.2349 L22: 5.7532 REMARK 3 L33: 9.4852 L12: 0.1460 REMARK 3 L13: -0.1017 L23: -4.4563 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.3538 S13: -0.0857 REMARK 3 S21: -0.3617 S22: 0.0547 S23: -0.0670 REMARK 3 S31: 0.1492 S32: 0.3536 S33: -0.0748 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 223 C 233 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9981 18.6805 64.3544 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.2874 REMARK 3 T33: 0.1896 T12: 0.1440 REMARK 3 T13: 0.0551 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 5.7261 L22: 5.4710 REMARK 3 L33: 10.7913 L12: 0.2093 REMARK 3 L13: -1.8893 L23: -0.9843 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: -0.6296 S13: 0.2444 REMARK 3 S21: 0.1046 S22: 0.1572 S23: 0.2503 REMARK 3 S31: -0.6980 S32: -0.5104 S33: -0.2417 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 234 C 294 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0825 6.0592 48.9107 REMARK 3 T TENSOR REMARK 3 T11: 0.0178 T22: 0.2225 REMARK 3 T33: 0.1214 T12: -0.0151 REMARK 3 T13: -0.0096 T23: 0.0696 REMARK 3 L TENSOR REMARK 3 L11: 1.5134 L22: 0.2924 REMARK 3 L33: 4.6976 L12: 0.0705 REMARK 3 L13: -0.2985 L23: -0.5227 REMARK 3 S TENSOR REMARK 3 S11: 0.1308 S12: -0.0691 S13: 0.0448 REMARK 3 S21: 0.0059 S22: 0.1842 S23: 0.1031 REMARK 3 S31: 0.0475 S32: -0.9160 S33: -0.3150 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 295 C 339 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3303 4.2618 13.5080 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.0854 REMARK 3 T33: 0.0500 T12: 0.0288 REMARK 3 T13: -0.0257 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.6667 L22: 1.1643 REMARK 3 L33: 4.0908 L12: 0.1164 REMARK 3 L13: 0.0596 L23: 0.8950 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: 0.3169 S13: -0.0453 REMARK 3 S21: -0.1338 S22: -0.0069 S23: 0.0349 REMARK 3 S31: 0.2408 S32: 0.1478 S33: -0.0411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4LGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3D9X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WIZARD3/4_B12: 2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM ACETATE/HCL, PH=4.6, VAPOR DIFFUSION, TEMPERATURE REMARK 280 289K, PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.01500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.01500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 488 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 583 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 205 REMARK 465 ALA A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 MET A 213 REMARK 465 LYS A 214 REMARK 465 ALA A 215 REMARK 465 MET A 216 REMARK 465 LYS A 217 REMARK 465 ASP A 218 REMARK 465 LEU A 219 REMARK 465 VAL A 220 REMARK 465 MET B 205 REMARK 465 ALA B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 MET B 213 REMARK 465 LYS B 214 REMARK 465 ALA B 215 REMARK 465 MET B 216 REMARK 465 LYS B 217 REMARK 465 ASP B 218 REMARK 465 LEU B 219 REMARK 465 VAL B 220 REMARK 465 VAL B 221 REMARK 465 GLY B 222 REMARK 465 ILE B 339 REMARK 465 ALA B 340 REMARK 465 MET C 205 REMARK 465 ALA C 206 REMARK 465 HIS C 207 REMARK 465 HIS C 208 REMARK 465 HIS C 209 REMARK 465 HIS C 210 REMARK 465 HIS C 211 REMARK 465 HIS C 212 REMARK 465 MET C 213 REMARK 465 LYS C 214 REMARK 465 ALA C 215 REMARK 465 MET C 216 REMARK 465 LYS C 217 REMARK 465 ASP C 218 REMARK 465 LEU C 219 REMARK 465 VAL C 220 REMARK 465 VAL C 221 REMARK 465 GLY C 222 REMARK 465 ALA C 340 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 221 CG1 CG2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 ILE A 339 CG1 CG2 CD1 REMARK 470 GLU B 251 CG CD OE1 OE2 REMARK 470 GLU B 334 CG CD OE1 OE2 REMARK 470 LYS C 225 CG CD CE NZ REMARK 470 GLU C 251 CG CD OE1 OE2 REMARK 470 ARG C 322 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 334 CG CD OE1 OE2 REMARK 470 LYS C 336 CG CD CE NZ REMARK 470 ILE C 339 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY C 252 O HOH C 592 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 272 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 230 19.11 59.28 REMARK 500 GLU A 251 -56.76 -23.81 REMARK 500 ILE A 321 -54.55 -121.62 REMARK 500 ASN B 229 -117.05 51.70 REMARK 500 ILE B 321 -55.68 -120.95 REMARK 500 ASN C 229 -122.41 45.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BAQUA.17833.B RELATED DB: TARGETTRACK DBREF 4LGO A 214 340 UNP Q64HT0 Q64HT0_BARQI 214 340 DBREF 4LGO B 214 340 UNP Q64HT0 Q64HT0_BARQI 214 340 DBREF 4LGO C 214 340 UNP Q64HT0 Q64HT0_BARQI 214 340 SEQADV 4LGO MET A 205 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO ALA A 206 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS A 207 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS A 208 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS A 209 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS A 210 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS A 211 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS A 212 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO MET A 213 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO MET B 205 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO ALA B 206 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS B 207 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS B 208 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS B 209 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS B 210 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS B 211 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS B 212 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO MET B 213 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO MET C 205 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO ALA C 206 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS C 207 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS C 208 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS C 209 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS C 210 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS C 211 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO HIS C 212 UNP Q64HT0 EXPRESSION TAG SEQADV 4LGO MET C 213 UNP Q64HT0 EXPRESSION TAG SEQRES 1 A 136 MET ALA HIS HIS HIS HIS HIS HIS MET LYS ALA MET LYS SEQRES 2 A 136 ASP LEU VAL VAL GLY ALA TRP LYS LEU VAL VAL ASN ASP SEQRES 3 A 136 GLU ASN PRO ILE ASP VAL ASN ALA GLY SER THR VAL LYS SEQRES 4 A 136 PHE VAL GLY VAL LYS ALA GLU GLU GLY ASN GLU ASP SER SEQRES 5 A 136 LYS ASN ILE LYS ILE THR THR GLY ASN ASN ASN GLU VAL SEQRES 6 A 136 LYS PHE ASP LEU ASN ASP ILE ILE ARG VAL LYS ARG VAL SEQRES 7 A 136 ILE ALA GLY LYS ALA ASN VAL SER GLU VAL GLY PHE VAL SEQRES 8 A 136 ILE THR GLY GLY PRO ASN MET THR VAL GLY GLY ILE ASN SEQRES 9 A 136 ALA GLY ASN LYS LYS ILE THR GLY VAL ALA ASN GLY ILE SEQRES 10 A 136 ARG GLU ASN ASP ALA VAL ASN VAL SER GLN LEU ASN GLU SEQRES 11 A 136 LEU LYS ASN GLN ILE ALA SEQRES 1 B 136 MET ALA HIS HIS HIS HIS HIS HIS MET LYS ALA MET LYS SEQRES 2 B 136 ASP LEU VAL VAL GLY ALA TRP LYS LEU VAL VAL ASN ASP SEQRES 3 B 136 GLU ASN PRO ILE ASP VAL ASN ALA GLY SER THR VAL LYS SEQRES 4 B 136 PHE VAL GLY VAL LYS ALA GLU GLU GLY ASN GLU ASP SER SEQRES 5 B 136 LYS ASN ILE LYS ILE THR THR GLY ASN ASN ASN GLU VAL SEQRES 6 B 136 LYS PHE ASP LEU ASN ASP ILE ILE ARG VAL LYS ARG VAL SEQRES 7 B 136 ILE ALA GLY LYS ALA ASN VAL SER GLU VAL GLY PHE VAL SEQRES 8 B 136 ILE THR GLY GLY PRO ASN MET THR VAL GLY GLY ILE ASN SEQRES 9 B 136 ALA GLY ASN LYS LYS ILE THR GLY VAL ALA ASN GLY ILE SEQRES 10 B 136 ARG GLU ASN ASP ALA VAL ASN VAL SER GLN LEU ASN GLU SEQRES 11 B 136 LEU LYS ASN GLN ILE ALA SEQRES 1 C 136 MET ALA HIS HIS HIS HIS HIS HIS MET LYS ALA MET LYS SEQRES 2 C 136 ASP LEU VAL VAL GLY ALA TRP LYS LEU VAL VAL ASN ASP SEQRES 3 C 136 GLU ASN PRO ILE ASP VAL ASN ALA GLY SER THR VAL LYS SEQRES 4 C 136 PHE VAL GLY VAL LYS ALA GLU GLU GLY ASN GLU ASP SER SEQRES 5 C 136 LYS ASN ILE LYS ILE THR THR GLY ASN ASN ASN GLU VAL SEQRES 6 C 136 LYS PHE ASP LEU ASN ASP ILE ILE ARG VAL LYS ARG VAL SEQRES 7 C 136 ILE ALA GLY LYS ALA ASN VAL SER GLU VAL GLY PHE VAL SEQRES 8 C 136 ILE THR GLY GLY PRO ASN MET THR VAL GLY GLY ILE ASN SEQRES 9 C 136 ALA GLY ASN LYS LYS ILE THR GLY VAL ALA ASN GLY ILE SEQRES 10 C 136 ARG GLU ASN ASP ALA VAL ASN VAL SER GLN LEU ASN GLU SEQRES 11 C 136 LEU LYS ASN GLN ILE ALA HET EDO B 401 4 HET EDO C 401 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *281(H2 O) HELIX 1 1 ASN A 328 ILE A 339 1 12 HELIX 2 2 ASN B 328 GLN B 338 1 11 HELIX 3 3 ASN C 328 ILE C 339 1 12 SHEET 1 A 5 ILE A 234 VAL A 236 0 SHEET 2 A 5 TRP A 224 VAL A 228 -1 N TRP A 224 O VAL A 236 SHEET 3 A 5 THR B 241 GLY B 246 1 O VAL B 242 N LYS A 225 SHEET 4 A 5 VAL C 269 LEU C 273 1 O VAL C 269 N LYS B 243 SHEET 5 A 5 ILE C 259 THR C 263 -1 N THR C 262 O LYS C 270 SHEET 1 B 5 ILE B 259 THR B 263 0 SHEET 2 B 5 VAL B 269 LEU B 273 -1 O LYS B 270 N THR B 262 SHEET 3 B 5 THR A 241 GLY A 246 1 N LYS A 243 O VAL B 269 SHEET 4 B 5 TRP C 224 VAL C 228 1 O LYS C 225 N VAL A 242 SHEET 5 B 5 ILE C 234 VAL C 236 -1 O VAL C 236 N TRP C 224 SHEET 1 C 5 ILE A 259 THR A 263 0 SHEET 2 C 5 GLU A 268 LEU A 273 -1 O LYS A 270 N THR A 262 SHEET 3 C 5 THR C 241 GLY C 246 1 O LYS C 243 N VAL A 269 SHEET 4 C 5 TRP B 224 VAL B 228 1 N VAL B 227 O VAL C 242 SHEET 5 C 5 ILE B 234 VAL B 236 -1 O VAL B 236 N TRP B 224 SHEET 1 D 7 ILE A 276 ARG A 278 0 SHEET 2 D 7 ARG C 281 ALA C 284 1 O ILE C 283 N ILE A 277 SHEET 3 D 7 ALA C 287 SER C 290 -1 O ALA C 287 N ALA C 284 SHEET 4 D 7 GLY C 293 ILE C 296 -1 O VAL C 295 N ASN C 288 SHEET 5 D 7 ASN C 301 THR C 303 -1 O MET C 302 N PHE C 294 SHEET 6 D 7 GLY C 306 LYS C 312 -1 O GLY C 306 N THR C 303 SHEET 7 D 7 ILE B 314 VAL B 317 1 N THR B 315 O ALA C 309 SHEET 1 E 7 ILE B 276 ARG B 278 0 SHEET 2 E 7 ARG A 281 ALA A 284 1 N ILE A 283 O ILE B 277 SHEET 3 E 7 ALA A 287 SER A 290 -1 O ALA A 287 N ALA A 284 SHEET 4 E 7 GLY A 293 ILE A 296 -1 O VAL A 295 N ASN A 288 SHEET 5 E 7 ASN A 301 THR A 303 -1 O MET A 302 N PHE A 294 SHEET 6 E 7 GLY A 306 LYS A 312 -1 O ASN A 308 N ASN A 301 SHEET 7 E 7 THR C 315 VAL C 317 1 O THR C 315 N ALA A 309 SHEET 1 F 7 ILE A 314 VAL A 317 0 SHEET 2 F 7 GLY B 306 LYS B 312 1 O ALA B 309 N THR A 315 SHEET 3 F 7 ASN B 301 THR B 303 -1 N THR B 303 O GLY B 306 SHEET 4 F 7 GLY B 293 ILE B 296 -1 N PHE B 294 O MET B 302 SHEET 5 F 7 ALA B 287 SER B 290 -1 N ASN B 288 O VAL B 295 SHEET 6 F 7 ARG B 281 ALA B 284 -1 N ALA B 284 O ALA B 287 SHEET 7 F 7 ILE C 276 ARG C 278 1 O ILE C 277 N ILE B 283 SITE 1 AC1 4 ASN A 266 ARG B 281 GLU B 291 ILE C 276 SITE 1 AC2 3 ILE A 276 ARG C 281 HOH C 528 CRYST1 120.030 37.110 109.780 90.00 119.43 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008331 0.000000 0.004699 0.00000 SCALE2 0.000000 0.026947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010458 0.00000