HEADER PROTEIN BINDING, TRANSFERASE 17-FEB-12 4DRF TITLE CRYSTAL STRUCTURE OF BACTERIAL PNKP-C/HEN1-N HETERODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOPHOSPHOESTERASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: C-TERMINAL HALF OF BACTERIAL PNKP; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: METHYLTRANSFERASE TYPE 12; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: N-TERMINAL HALF OF BACTERIAL HEN1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: CTHE_2768; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 10 ORGANISM_TAXID: 203119; SOURCE 11 STRAIN: ATCC 27405 / DSM 1237; SOURCE 12 GENE: CTHE_2767; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA REPAIR, RNA LIGASE, LIGASE-ACTIVATING, PROTEIN BINDING, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.H.HUANG,P.WANG REVDAT 5 28-FEB-24 4DRF 1 REMARK SEQADV REVDAT 4 15-NOV-17 4DRF 1 REMARK REVDAT 3 29-AUG-12 4DRF 1 JRNL REVDAT 2 15-AUG-12 4DRF 1 JRNL REVDAT 1 01-AUG-12 4DRF 0 JRNL AUTH P.WANG,C.M.CHAN,D.CHRISTENSEN,C.ZHANG,K.SELVADURAI,R.H.HUANG JRNL TITL MOLECULAR BASIS OF BACTERIAL PROTEIN HEN1 ACTIVATING THE JRNL TITL 2 LIGASE ACTIVITY OF BACTERIAL PROTEIN PNKP FOR RNA REPAIR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 13248 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22847431 JRNL DOI 10.1073/PNAS.1209805109 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 33610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4101 - 6.2507 0.99 2874 139 0.1787 0.2070 REMARK 3 2 6.2507 - 4.9638 0.99 2871 146 0.1761 0.1916 REMARK 3 3 4.9638 - 4.3371 0.99 2906 150 0.1342 0.1991 REMARK 3 4 4.3371 - 3.9409 0.99 2885 145 0.1566 0.2198 REMARK 3 5 3.9409 - 3.6586 0.99 2866 143 0.1738 0.2036 REMARK 3 6 3.6586 - 3.4430 0.99 2881 147 0.1862 0.2407 REMARK 3 7 3.4430 - 3.2706 0.98 2844 144 0.2021 0.2772 REMARK 3 8 3.2706 - 3.1283 0.98 2816 148 0.2100 0.2990 REMARK 3 9 3.1283 - 3.0079 0.97 2807 136 0.1941 0.2904 REMARK 3 10 3.0079 - 2.9041 0.96 2822 146 0.2247 0.3044 REMARK 3 11 2.9041 - 2.8133 0.95 2729 133 0.2114 0.3524 REMARK 3 12 2.8133 - 2.7329 0.93 2698 136 0.2561 0.3414 REMARK 3 13 2.7329 - 2.6610 0.91 2641 138 0.2436 0.3204 REMARK 3 14 2.6610 - 2.6000 0.87 2449 127 0.2735 0.3934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 38.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.85850 REMARK 3 B22 (A**2) : -2.11520 REMARK 3 B33 (A**2) : 7.97370 REMARK 3 B12 (A**2) : -10.13170 REMARK 3 B13 (A**2) : -2.35520 REMARK 3 B23 (A**2) : 1.12180 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 10111 REMARK 3 ANGLE : 1.284 13657 REMARK 3 CHIRALITY : 0.085 1496 REMARK 3 PLANARITY : 0.006 1736 REMARK 3 DIHEDRAL : 16.230 3808 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.2422 -28.7383 37.5273 REMARK 3 T TENSOR REMARK 3 T11: 0.1566 T22: 0.1329 REMARK 3 T33: 0.1697 T12: 0.0319 REMARK 3 T13: -0.0073 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.1955 L22: 0.0831 REMARK 3 L33: 0.0826 L12: 0.1486 REMARK 3 L13: -0.0377 L23: -0.0341 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.0358 S13: 0.0269 REMARK 3 S21: 0.0050 S22: -0.0087 S23: -0.0073 REMARK 3 S31: 0.0170 S32: 0.0028 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 452:648 OR RESSEQ REMARK 3 660:870 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 452:648 OR RESSEQ REMARK 3 660:870 ) REMARK 3 ATOM PAIRS NUMBER : 3276 REMARK 3 RMSD : 0.053 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B AND (RESSEQ 1:61 OR RESSEQ 73:196 REMARK 3 OR RESSEQ 203:223 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 1:61 OR RESSEQ 73:196 REMARK 3 OR RESSEQ 203:223 ) REMARK 3 ATOM PAIRS NUMBER : 1667 REMARK 3 RMSD : 0.055 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG6000, 0.5M NACL, 25MM CACL2, 5% REMARK 280 METHANOL, 50MM HEPES, 50 MM TRIS-HCL, PH 7.75, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 444 REMARK 465 ILE A 445 REMARK 465 LEU A 446 REMARK 465 ASP A 447 REMARK 465 ILE A 448 REMARK 465 ASN A 449 REMARK 465 ASP A 450 REMARK 465 VAL A 451 REMARK 465 THR A 649 REMARK 465 VAL A 650 REMARK 465 SER A 651 REMARK 465 PHE A 652 REMARK 465 ASP A 653 REMARK 465 VAL A 654 REMARK 465 SER A 655 REMARK 465 ARG A 656 REMARK 465 GLN A 657 REMARK 465 THR A 658 REMARK 465 SER A 659 REMARK 465 ALA B 62 REMARK 465 ARG B 63 REMARK 465 GLY B 64 REMARK 465 LYS B 65 REMARK 465 LYS B 66 REMARK 465 GLY B 67 REMARK 465 SER B 68 REMARK 465 SER B 69 REMARK 465 GLY B 70 REMARK 465 GLU B 71 REMARK 465 GLY B 72 REMARK 465 VAL B 197 REMARK 465 GLY B 198 REMARK 465 GLU B 199 REMARK 465 ASP B 200 REMARK 465 GLU B 201 REMARK 465 ILE B 202 REMARK 465 GLY B 224 REMARK 465 ARG B 225 REMARK 465 TYR B 226 REMARK 465 LEU B 227 REMARK 465 ILE B 228 REMARK 465 ARG B 229 REMARK 465 LYS B 230 REMARK 465 MET C 444 REMARK 465 ILE C 445 REMARK 465 LEU C 446 REMARK 465 ASP C 447 REMARK 465 ILE C 448 REMARK 465 ASN C 449 REMARK 465 ASP C 450 REMARK 465 VAL C 451 REMARK 465 THR C 649 REMARK 465 VAL C 650 REMARK 465 SER C 651 REMARK 465 PHE C 652 REMARK 465 ASP C 653 REMARK 465 VAL C 654 REMARK 465 SER C 655 REMARK 465 ARG C 656 REMARK 465 GLN C 657 REMARK 465 THR C 658 REMARK 465 SER C 659 REMARK 465 ALA D 62 REMARK 465 ARG D 63 REMARK 465 GLY D 64 REMARK 465 LYS D 65 REMARK 465 LYS D 66 REMARK 465 GLY D 67 REMARK 465 SER D 68 REMARK 465 SER D 69 REMARK 465 GLY D 70 REMARK 465 GLU D 71 REMARK 465 GLY D 72 REMARK 465 VAL D 197 REMARK 465 GLY D 198 REMARK 465 GLU D 199 REMARK 465 ASP D 200 REMARK 465 GLU D 201 REMARK 465 ILE D 202 REMARK 465 GLY D 224 REMARK 465 ARG D 225 REMARK 465 TYR D 226 REMARK 465 LEU D 227 REMARK 465 ILE D 228 REMARK 465 ARG D 229 REMARK 465 LYS D 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 761 O HOH C 921 1.85 REMARK 500 O PRO C 692 O HOH C 913 1.88 REMARK 500 O PRO B 117 O HOH B 424 1.91 REMARK 500 OE1 GLU A 500 O HOH A 937 1.92 REMARK 500 O GLU C 509 O HOH C 910 2.00 REMARK 500 NZ LYS A 824 O HOH A 911 2.01 REMARK 500 NH2 ARG B 47 O HOH B 420 2.05 REMARK 500 NH2 ARG A 631 O HOH A 903 2.07 REMARK 500 ND2 ASN A 647 O HOH A 910 2.07 REMARK 500 O SER A 591 O HOH A 951 2.07 REMARK 500 OD2 ASP A 596 O HOH A 951 2.10 REMARK 500 O TYR D 164 O HOH D 302 2.10 REMARK 500 O LEU A 492 O HOH A 946 2.10 REMARK 500 OE2 GLU C 769 O HOH C 945 2.13 REMARK 500 OD2 ASP C 746 O HOH C 952 2.13 REMARK 500 OE2 GLU A 853 O HOH A 932 2.14 REMARK 500 ND2 ASN A 694 O HOH A 915 2.15 REMARK 500 O HOH C 948 O HOH C 951 2.15 REMARK 500 OD2 ASP B 203 O HOH B 409 2.16 REMARK 500 OG SER C 695 O HOH C 930 2.17 REMARK 500 O HOH A 922 O HOH B 407 2.17 REMARK 500 O ASP A 734 O HOH A 933 2.18 REMARK 500 O PHE C 704 O HOH C 943 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 590 45.35 -57.09 REMARK 500 SER A 591 -23.89 -161.38 REMARK 500 PRO A 610 -153.84 -82.75 REMARK 500 GLN A 622 -68.56 -149.47 REMARK 500 TRP A 691 125.48 -172.57 REMARK 500 ASP B 60 103.18 -46.83 REMARK 500 SER B 86 -158.23 -88.49 REMARK 500 PHE B 97 54.51 -109.80 REMARK 500 ASP B 153 107.26 -163.39 REMARK 500 LEU B 205 -76.16 -66.30 REMARK 500 LYS C 590 45.65 -58.19 REMARK 500 SER C 591 -23.63 -162.30 REMARK 500 PRO C 610 -154.02 -82.97 REMARK 500 GLN C 622 -69.42 -147.20 REMARK 500 TRP C 691 125.43 -172.65 REMARK 500 ASN C 718 170.11 -59.75 REMARK 500 ASP D 60 102.73 -46.90 REMARK 500 SER D 86 -160.00 -89.85 REMARK 500 PHE D 97 55.23 -109.69 REMARK 500 ASP D 153 109.90 -163.09 REMARK 500 LEU D 205 -76.88 -64.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 10 PRO B 11 38.71 REMARK 500 PRO D 10 PRO D 11 81.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DQZ RELATED DB: PDB DBREF 4DRF A 445 870 UNP A3DJ38 A3DJ38_CLOTH 445 870 DBREF 4DRF B 1 230 UNP A3DJ37 A3DJ37_CLOTH 1 230 DBREF 4DRF C 445 870 UNP A3DJ38 A3DJ38_CLOTH 445 870 DBREF 4DRF D 1 230 UNP A3DJ37 A3DJ37_CLOTH 1 230 SEQADV 4DRF MET A 444 UNP A3DJ38 INITIATING METHIONINE SEQADV 4DRF MET C 444 UNP A3DJ38 INITIATING METHIONINE SEQRES 1 A 427 MET ILE LEU ASP ILE ASN ASP VAL LEU GLY LYS LYS ILE SEQRES 2 A 427 ILE THR THR ARG LEU MET SER SER ILE THR ILE HIS GLU SEQRES 3 A 427 GLU ASN SER ILE ALA ALA LEU GLU VAL MET SER ARG PHE SEQRES 4 A 427 ALA ALA ASP PRO HIS TRP LEU ILE TYR LEU PRO PRO THR SEQRES 5 A 427 MET SER PRO CYS GLU THR SER LYS LYS GLU GLY MET LEU SEQRES 6 A 427 GLU HIS PRO ILE GLU ALA PHE GLU TYR PHE ARG THR ARG SEQRES 7 A 427 GLY VAL GLY LYS VAL VAL CYS GLU GLN LYS HIS MET GLY SEQRES 8 A 427 SER ARG ALA VAL VAL ILE VAL CYS LYS ASP SER GLN VAL SEQRES 9 A 427 ALA GLU LYS ARG PHE GLY VAL LEU ASP GLY THR ALA GLY SEQRES 10 A 427 ILE CYS TYR THR ARG THR GLY ARG HIS PHE PHE ASP ASP SEQRES 11 A 427 MET GLN LEU GLU ALA GLU LEU ILE ASP ARG VAL ARG LYS SEQRES 12 A 427 VAL LEU ASP LYS SER GLY PHE TRP GLY ASP PHE ASN THR SEQRES 13 A 427 ASP TRP VAL CYS LEU ASP CYS GLU LEU MET PRO TRP SER SEQRES 14 A 427 ALA LYS ALA GLN LYS LEU LEU GLU GLU GLN TYR SER ALA SEQRES 15 A 427 VAL GLY ILE SER GLY ARG VAL VAL LEU ASP GLU ALA VAL SEQRES 16 A 427 LYS LEU LEU LYS GLN ALA SER LEU ASN LYS THR VAL SER SEQRES 17 A 427 PHE ASP VAL SER ARG GLN THR SER GLY LYS ASN ALA ASP SEQRES 18 A 427 ILE ASN GLU LEU LEU GLN ARG PHE THR GLU ARG SER GLU SEQRES 19 A 427 MET MET GLN LYS TYR VAL GLU ALA TYR ARG LYS TYR CYS SEQRES 20 A 427 TRP PRO VAL ASN SER ILE ASP ASP LEU LYS LEU ALA PRO SEQRES 21 A 427 PHE HIS ILE LEU ALA THR GLU GLY LYS VAL HIS SER ASP SEQRES 22 A 427 LYS ASN HIS ILE TRP HIS MET ASP THR ILE ALA LYS TYR SEQRES 23 A 427 CYS THR GLN ASP ASP SER LEU ILE MET ALA THR ASN HIS SEQRES 24 A 427 ILE LEU VAL ASP VAL THR ASP ALA GLU SER VAL ASP LYS SEQRES 25 A 427 GLY ILE LYS TRP TRP GLU ASP LEU THR ALA SER GLY GLY SEQRES 26 A 427 GLU GLY MET VAL VAL LYS PRO TYR ASP PHE ILE VAL LYS SEQRES 27 A 427 ASN GLY ARG GLU LEU LEU GLN PRO ALA VAL LYS CYS ARG SEQRES 28 A 427 GLY ARG GLU TYR LEU ARG ILE ILE TYR GLY PRO GLU TYR SEQRES 29 A 427 THR MET ASP GLU ASN ILE GLU ARG LEU ARG ASN ARG ALA SEQRES 30 A 427 VAL GLY LYS LYS ARG SER LEU ALA LEU ARG GLU PHE SER SEQRES 31 A 427 LEU GLY MET GLU ALA LEU GLU ARG PHE VAL ARG ASN GLU SEQRES 32 A 427 PRO LEU TYR ARG VAL HIS GLU CYS VAL PHE GLY VAL LEU SEQRES 33 A 427 ALA LEU GLU SER GLU PRO VAL ASP PRO ARG LEU SEQRES 1 B 230 MET ILE LEU THR ILE THR TYR THR GLN PRO PRO ALA THR SEQRES 2 B 230 ASP LEU GLY TYR LEU LEU HIS LYS ASN PRO SER ARG PRO SEQRES 3 B 230 GLN THR PHE GLU LEU ASN HIS GLY LYS ALA HIS ILE PHE SEQRES 4 B 230 TYR PRO GLU ALA THR SER GLU ARG CYS THR VAL ALA LEU SEQRES 5 B 230 LEU LEU ASP ILE ASP PRO ILE ASP LEU ALA ARG GLY LYS SEQRES 6 B 230 LYS GLY SER SER GLY GLU GLY GLY LEU PHE ASP TYR VAL SEQRES 7 B 230 ASN ASP ARG PRO TYR VAL SER SER SER PHE MET SER VAL SEQRES 8 B 230 ALA ILE SER ARG VAL PHE GLY THR ALA MET SER GLY LYS SEQRES 9 B 230 CYS LYS GLU LYS PRO GLU LEU ALA ALA ILE LYS LEU PRO SEQRES 10 B 230 LEU LYS ALA LYS ILE MET MET LEU PRO CYS LYS GLY GLY SEQRES 11 B 230 GLU GLU ILE ILE TYR ARG LEU PHE GLU PRO LEU GLY TYR SEQRES 12 B 230 LYS VAL ASP VAL GLU GLY TYR MET LEU ASP GLU LYS PHE SEQRES 13 B 230 PRO GLU TRP GLY LYS SER ARG TYR TYR THR VAL SER LEU SEQRES 14 B 230 GLU GLY GLU VAL ARG VAL ARG ASP LEU LEU ASN HIS ILE SEQRES 15 B 230 TYR VAL LEU ILE PRO VAL LEU ASP SER GLU LYS HIS TYR SEQRES 16 B 230 TRP VAL GLY GLU ASP GLU ILE ASP LYS LEU PHE GLN HIS SEQRES 17 B 230 GLY GLU GLY TRP LEU VAL ASP HIS PRO GLU LYS GLU LEU SEQRES 18 B 230 ILE THR GLY ARG TYR LEU ILE ARG LYS SEQRES 1 C 427 MET ILE LEU ASP ILE ASN ASP VAL LEU GLY LYS LYS ILE SEQRES 2 C 427 ILE THR THR ARG LEU MET SER SER ILE THR ILE HIS GLU SEQRES 3 C 427 GLU ASN SER ILE ALA ALA LEU GLU VAL MET SER ARG PHE SEQRES 4 C 427 ALA ALA ASP PRO HIS TRP LEU ILE TYR LEU PRO PRO THR SEQRES 5 C 427 MET SER PRO CYS GLU THR SER LYS LYS GLU GLY MET LEU SEQRES 6 C 427 GLU HIS PRO ILE GLU ALA PHE GLU TYR PHE ARG THR ARG SEQRES 7 C 427 GLY VAL GLY LYS VAL VAL CYS GLU GLN LYS HIS MET GLY SEQRES 8 C 427 SER ARG ALA VAL VAL ILE VAL CYS LYS ASP SER GLN VAL SEQRES 9 C 427 ALA GLU LYS ARG PHE GLY VAL LEU ASP GLY THR ALA GLY SEQRES 10 C 427 ILE CYS TYR THR ARG THR GLY ARG HIS PHE PHE ASP ASP SEQRES 11 C 427 MET GLN LEU GLU ALA GLU LEU ILE ASP ARG VAL ARG LYS SEQRES 12 C 427 VAL LEU ASP LYS SER GLY PHE TRP GLY ASP PHE ASN THR SEQRES 13 C 427 ASP TRP VAL CYS LEU ASP CYS GLU LEU MET PRO TRP SER SEQRES 14 C 427 ALA LYS ALA GLN LYS LEU LEU GLU GLU GLN TYR SER ALA SEQRES 15 C 427 VAL GLY ILE SER GLY ARG VAL VAL LEU ASP GLU ALA VAL SEQRES 16 C 427 LYS LEU LEU LYS GLN ALA SER LEU ASN LYS THR VAL SER SEQRES 17 C 427 PHE ASP VAL SER ARG GLN THR SER GLY LYS ASN ALA ASP SEQRES 18 C 427 ILE ASN GLU LEU LEU GLN ARG PHE THR GLU ARG SER GLU SEQRES 19 C 427 MET MET GLN LYS TYR VAL GLU ALA TYR ARG LYS TYR CYS SEQRES 20 C 427 TRP PRO VAL ASN SER ILE ASP ASP LEU LYS LEU ALA PRO SEQRES 21 C 427 PHE HIS ILE LEU ALA THR GLU GLY LYS VAL HIS SER ASP SEQRES 22 C 427 LYS ASN HIS ILE TRP HIS MET ASP THR ILE ALA LYS TYR SEQRES 23 C 427 CYS THR GLN ASP ASP SER LEU ILE MET ALA THR ASN HIS SEQRES 24 C 427 ILE LEU VAL ASP VAL THR ASP ALA GLU SER VAL ASP LYS SEQRES 25 C 427 GLY ILE LYS TRP TRP GLU ASP LEU THR ALA SER GLY GLY SEQRES 26 C 427 GLU GLY MET VAL VAL LYS PRO TYR ASP PHE ILE VAL LYS SEQRES 27 C 427 ASN GLY ARG GLU LEU LEU GLN PRO ALA VAL LYS CYS ARG SEQRES 28 C 427 GLY ARG GLU TYR LEU ARG ILE ILE TYR GLY PRO GLU TYR SEQRES 29 C 427 THR MET ASP GLU ASN ILE GLU ARG LEU ARG ASN ARG ALA SEQRES 30 C 427 VAL GLY LYS LYS ARG SER LEU ALA LEU ARG GLU PHE SER SEQRES 31 C 427 LEU GLY MET GLU ALA LEU GLU ARG PHE VAL ARG ASN GLU SEQRES 32 C 427 PRO LEU TYR ARG VAL HIS GLU CYS VAL PHE GLY VAL LEU SEQRES 33 C 427 ALA LEU GLU SER GLU PRO VAL ASP PRO ARG LEU SEQRES 1 D 230 MET ILE LEU THR ILE THR TYR THR GLN PRO PRO ALA THR SEQRES 2 D 230 ASP LEU GLY TYR LEU LEU HIS LYS ASN PRO SER ARG PRO SEQRES 3 D 230 GLN THR PHE GLU LEU ASN HIS GLY LYS ALA HIS ILE PHE SEQRES 4 D 230 TYR PRO GLU ALA THR SER GLU ARG CYS THR VAL ALA LEU SEQRES 5 D 230 LEU LEU ASP ILE ASP PRO ILE ASP LEU ALA ARG GLY LYS SEQRES 6 D 230 LYS GLY SER SER GLY GLU GLY GLY LEU PHE ASP TYR VAL SEQRES 7 D 230 ASN ASP ARG PRO TYR VAL SER SER SER PHE MET SER VAL SEQRES 8 D 230 ALA ILE SER ARG VAL PHE GLY THR ALA MET SER GLY LYS SEQRES 9 D 230 CYS LYS GLU LYS PRO GLU LEU ALA ALA ILE LYS LEU PRO SEQRES 10 D 230 LEU LYS ALA LYS ILE MET MET LEU PRO CYS LYS GLY GLY SEQRES 11 D 230 GLU GLU ILE ILE TYR ARG LEU PHE GLU PRO LEU GLY TYR SEQRES 12 D 230 LYS VAL ASP VAL GLU GLY TYR MET LEU ASP GLU LYS PHE SEQRES 13 D 230 PRO GLU TRP GLY LYS SER ARG TYR TYR THR VAL SER LEU SEQRES 14 D 230 GLU GLY GLU VAL ARG VAL ARG ASP LEU LEU ASN HIS ILE SEQRES 15 D 230 TYR VAL LEU ILE PRO VAL LEU ASP SER GLU LYS HIS TYR SEQRES 16 D 230 TRP VAL GLY GLU ASP GLU ILE ASP LYS LEU PHE GLN HIS SEQRES 17 D 230 GLY GLU GLY TRP LEU VAL ASP HIS PRO GLU LYS GLU LEU SEQRES 18 D 230 ILE THR GLY ARG TYR LEU ILE ARG LYS HET GOL B 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *154(H2 O) HELIX 1 1 HIS A 468 ARG A 481 1 14 HELIX 2 2 HIS A 510 THR A 520 1 11 HELIX 3 3 ASP A 544 PHE A 552 1 9 HELIX 4 4 ASP A 573 LYS A 590 1 18 HELIX 5 5 GLY A 592 ASN A 598 1 7 HELIX 6 6 LYS A 614 GLN A 616 5 3 HELIX 7 7 LYS A 617 GLN A 622 1 6 HELIX 8 8 GLN A 622 ASN A 647 1 26 HELIX 9 9 ASP A 664 LYS A 688 1 25 HELIX 10 10 SER A 695 LEU A 699 5 5 HELIX 11 11 ASN A 718 THR A 731 1 14 HELIX 12 12 ASP A 749 THR A 764 1 16 HELIX 13 13 LEU A 799 GLY A 804 1 6 HELIX 14 14 MET A 809 ARG A 817 1 9 HELIX 15 15 VAL A 821 ARG A 844 1 24 HELIX 16 16 PRO A 847 SER A 863 1 17 HELIX 17 17 THR B 13 HIS B 20 1 8 HELIX 18 18 GLY B 73 TYR B 77 5 5 HELIX 19 19 ASP B 80 VAL B 84 5 5 HELIX 20 20 SER B 86 PHE B 97 1 12 HELIX 21 21 GLY B 98 GLY B 103 5 6 HELIX 22 22 GLU B 110 ILE B 114 5 5 HELIX 23 23 GLY B 129 GLU B 139 1 11 HELIX 24 24 PRO B 140 GLY B 142 5 3 HELIX 25 25 PHE B 156 TRP B 159 5 4 HELIX 26 26 ARG B 174 ASP B 190 1 17 HELIX 27 27 GLU B 192 TRP B 196 5 5 HELIX 28 28 GLU B 218 THR B 223 1 6 HELIX 29 29 HIS C 468 ARG C 481 1 14 HELIX 30 30 HIS C 510 THR C 520 1 11 HELIX 31 31 ASP C 544 PHE C 552 1 9 HELIX 32 32 ASP C 573 LYS C 590 1 18 HELIX 33 33 GLY C 592 ASN C 598 1 7 HELIX 34 34 LYS C 614 GLN C 616 5 3 HELIX 35 35 LYS C 617 GLN C 622 1 6 HELIX 36 36 GLN C 622 ASN C 647 1 26 HELIX 37 37 ASP C 664 LYS C 688 1 25 HELIX 38 38 SER C 695 LEU C 699 5 5 HELIX 39 39 ASN C 718 THR C 731 1 14 HELIX 40 40 ASP C 749 THR C 764 1 16 HELIX 41 41 LEU C 799 GLY C 804 1 6 HELIX 42 42 MET C 809 ARG C 817 1 9 HELIX 43 43 VAL C 821 ARG C 844 1 24 HELIX 44 44 PRO C 847 SER C 863 1 17 HELIX 45 45 THR D 13 HIS D 20 1 8 HELIX 46 46 GLY D 73 TYR D 77 5 5 HELIX 47 47 ASP D 80 VAL D 84 5 5 HELIX 48 48 SER D 86 PHE D 97 1 12 HELIX 49 49 GLY D 98 GLY D 103 5 6 HELIX 50 50 GLU D 110 ILE D 114 5 5 HELIX 51 51 GLY D 129 GLU D 139 1 11 HELIX 52 52 PRO D 140 GLY D 142 5 3 HELIX 53 53 PHE D 156 TRP D 159 5 4 HELIX 54 54 ARG D 174 ASP D 190 1 17 HELIX 55 55 GLU D 192 TRP D 196 5 5 HELIX 56 56 GLU D 218 THR D 223 1 6 SHEET 1 A 2 LYS A 455 ILE A 457 0 SHEET 2 A 2 ILE A 465 ILE A 467 -1 O ILE A 467 N LYS A 455 SHEET 1 B 5 SER A 497 PRO A 498 0 SHEET 2 B 5 VAL A 791 ARG A 794 1 O LYS A 792 N SER A 497 SHEET 3 B 5 GLY A 770 PRO A 775 -1 N VAL A 773 O VAL A 791 SHEET 4 B 5 LYS A 525 LYS A 531 -1 N GLU A 529 O VAL A 772 SHEET 5 B 5 HIS A 742 ASP A 746 -1 O VAL A 745 N VAL A 526 SHEET 1 C 5 GLY A 560 THR A 564 0 SHEET 2 C 5 SER A 535 CYS A 542 -1 N VAL A 538 O TYR A 563 SHEET 3 C 5 TRP A 601 MET A 609 -1 O LEU A 604 N VAL A 539 SHEET 4 C 5 LYS A 700 THR A 709 -1 O PHE A 704 N ASP A 605 SHEET 5 C 5 LYS A 712 VAL A 713 -1 O LYS A 712 N THR A 709 SHEET 1 D 8 LYS A 661 ASN A 662 0 SHEET 2 D 8 GLN B 27 LEU B 31 -1 O THR B 28 N LYS A 661 SHEET 3 D 8 GLY B 34 ALA B 43 -1 O ALA B 36 N PHE B 29 SHEET 4 D 8 CYS B 48 ILE B 56 -1 O THR B 49 N GLU B 42 SHEET 5 D 8 ILE B 2 TYR B 7 -1 N LEU B 3 O LEU B 52 SHEET 6 D 8 LEU B 116 PRO B 126 -1 O LYS B 119 N THR B 6 SHEET 7 D 8 LYS B 161 VAL B 173 -1 O GLY B 171 N LEU B 118 SHEET 8 D 8 LYS B 144 MET B 151 -1 N ASP B 146 O SER B 168 SHEET 1 E 2 LYS A 781 ASN A 782 0 SHEET 2 E 2 GLU A 785 LEU A 786 -1 O GLU A 785 N ASN A 782 SHEET 1 F 2 LYS C 455 ILE C 457 0 SHEET 2 F 2 ILE C 465 ILE C 467 -1 O ILE C 467 N LYS C 455 SHEET 1 G 5 SER C 497 PRO C 498 0 SHEET 2 G 5 VAL C 791 ARG C 794 1 O LYS C 792 N SER C 497 SHEET 3 G 5 GLY C 770 PRO C 775 -1 N VAL C 773 O VAL C 791 SHEET 4 G 5 LYS C 525 LYS C 531 -1 N GLU C 529 O VAL C 772 SHEET 5 G 5 HIS C 742 ASP C 746 -1 O VAL C 745 N VAL C 526 SHEET 1 H 5 GLY C 560 THR C 564 0 SHEET 2 H 5 SER C 535 CYS C 542 -1 N VAL C 538 O TYR C 563 SHEET 3 H 5 TRP C 601 MET C 609 -1 O LEU C 604 N VAL C 539 SHEET 4 H 5 LYS C 700 THR C 709 -1 O PHE C 704 N ASP C 605 SHEET 5 H 5 LYS C 712 VAL C 713 -1 O LYS C 712 N THR C 709 SHEET 1 I 8 LYS C 661 ASN C 662 0 SHEET 2 I 8 GLN D 27 LEU D 31 -1 O THR D 28 N LYS C 661 SHEET 3 I 8 GLY D 34 ALA D 43 -1 O ALA D 36 N PHE D 29 SHEET 4 I 8 CYS D 48 ILE D 56 -1 O LEU D 53 N HIS D 37 SHEET 5 I 8 ILE D 2 TYR D 7 -1 N ILE D 5 O VAL D 50 SHEET 6 I 8 LEU D 116 PRO D 126 -1 O LYS D 119 N THR D 6 SHEET 7 I 8 LYS D 161 VAL D 173 -1 O GLY D 171 N LEU D 118 SHEET 8 I 8 LYS D 144 MET D 151 -1 N ASP D 146 O SER D 168 SHEET 1 J 2 LYS C 781 ASN C 782 0 SHEET 2 J 2 GLU C 785 LEU C 786 -1 O GLU C 785 N ASN C 782 CISPEP 1 MET A 609 PRO A 610 0 1.48 CISPEP 2 SER A 766 GLY A 767 0 7.11 CISPEP 3 MET C 609 PRO C 610 0 2.13 CISPEP 4 SER C 766 GLY C 767 0 7.21 SITE 1 AC1 7 ASP A 716 PHE B 206 GLY B 209 GLU B 210 SITE 2 AC1 7 GLY B 211 LEU B 213 VAL B 214 CRYST1 59.667 59.707 101.542 81.27 87.67 88.39 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016760 -0.000471 -0.000618 0.00000 SCALE2 0.000000 0.016755 -0.002556 0.00000 SCALE3 0.000000 0.000000 0.009970 0.00000