HEADER PROTEIN TRANSPORT 07-SEP-13 4C4P TITLE CRYSTAL STRUCTURE OF WILD-TYPE RAB11 COMPLEXED TO FIP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-11A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-173; COMPND 5 SYNONYM: RAB-11, YL8; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAB11 FAMILY-INTERACTING PROTEIN 2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RAB-BINDING DOMAIN, RESIDUES 410-512; COMPND 11 SYNONYM: RAB11-FIP2, NRIP11; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS PROTEIN TRANSPORT, EFFECTOR, VESICLE TRAFFICKING, ENDOSOMES EXPDTA X-RAY DIFFRACTION AUTHOR A.SULTANA,A.R.KHAN REVDAT 4 16-SEP-15 4C4P 1 SOURCE REVDAT 3 30-OCT-13 4C4P 1 JRNL REVDAT 2 02-OCT-13 4C4P 1 JRNL ATOM REVDAT 1 18-SEP-13 4C4P 0 JRNL AUTH P.LALL,C.P.HORGAN,S.ODA,E.FRANKLIN,A.SULTANA,S.R.HANSCOMB, JRNL AUTH 2 M.W.MCCAFFREY,A.R.KHAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF FIP2 BINDING TO THE JRNL TITL 2 ENDOSOME-LOCALISED RAB25 GTPASE JRNL REF BIOCHIM.BIOPHYS.ACTA V.1834 2679 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 24056041 JRNL DOI 10.1016/J.BBAPAP.2013.09.005 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.000 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.955 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.36 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.94 REMARK 3 NUMBER OF REFLECTIONS : 18980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1826 REMARK 3 R VALUE (WORKING SET) : 0.1804 REMARK 3 FREE R VALUE : 0.2234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9580 - 3.8233 1.00 2724 132 0.1790 0.2070 REMARK 3 2 3.8233 - 3.0359 1.00 2596 145 0.1778 0.2274 REMARK 3 3 3.0359 - 2.6525 1.00 2552 145 0.1879 0.2326 REMARK 3 4 2.6525 - 2.4101 1.00 2545 141 0.1795 0.2268 REMARK 3 5 2.4101 - 2.2374 1.00 2534 136 0.1761 0.2282 REMARK 3 6 2.2374 - 2.1056 1.00 2537 137 0.1794 0.2460 REMARK 3 7 2.1056 - 2.0001 1.00 2513 143 0.1914 0.2351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.22 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1939 REMARK 3 ANGLE : 1.026 2646 REMARK 3 CHIRALITY : 0.051 302 REMARK 3 PLANARITY : 0.003 333 REMARK 3 DIHEDRAL : 15.960 747 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 26.9827 8.3308 21.7740 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.1011 REMARK 3 T33: 0.1204 T12: 0.0375 REMARK 3 T13: 0.0252 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.1525 L22: 1.5268 REMARK 3 L33: 1.2611 L12: -0.2754 REMARK 3 L13: 0.0406 L23: -0.4586 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: 0.0722 S13: 0.2040 REMARK 3 S21: -0.2291 S22: 0.0098 S23: -0.0040 REMARK 3 S31: -0.0550 S32: -0.0813 S33: 0.2179 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-13. REMARK 100 THE PDBE ID CODE IS EBI-58228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18989 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 40.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.9 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.62000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.24000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.24000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.62000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 6 REMARK 465 GLY B 406 REMARK 465 ALA B 407 REMARK 465 MET B 408 REMARK 465 ALA B 409 REMARK 465 ALA B 410 REMARK 465 LYS B 411 REMARK 465 PHE B 412 REMARK 465 ARG B 413 REMARK 465 ALA B 414 REMARK 465 SER B 415 REMARK 465 ASN B 416 REMARK 465 ILE B 417 REMARK 465 MET B 418 REMARK 465 PRO B 419 REMARK 465 SER B 420 REMARK 465 SER B 421 REMARK 465 SER B 422 REMARK 465 PHE B 423 REMARK 465 HIS B 424 REMARK 465 MET B 425 REMARK 465 SER B 426 REMARK 465 PRO B 427 REMARK 465 THR B 428 REMARK 465 SER B 429 REMARK 465 ASN B 430 REMARK 465 GLU B 431 REMARK 465 ASP B 432 REMARK 465 LEU B 433 REMARK 465 ARG B 434 REMARK 465 LYS B 435 REMARK 465 ILE B 436 REMARK 465 PRO B 437 REMARK 465 ASP B 438 REMARK 465 SER B 439 REMARK 465 ASN B 440 REMARK 465 PRO B 441 REMARK 465 PHE B 442 REMARK 465 ASP B 443 REMARK 465 ALA B 444 REMARK 465 THR B 445 REMARK 465 ALA B 446 REMARK 465 GLY B 447 REMARK 465 ARG B 504 REMARK 465 LYS B 505 REMARK 465 ALA B 506 REMARK 465 GLY B 507 REMARK 465 LYS B 508 REMARK 465 PHE B 509 REMARK 465 SER B 510 REMARK 465 ASN B 511 REMARK 465 SER B 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 448 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 173 CB CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 72 O HOH A 2072 2.08 REMARK 500 HH11 ARG A 72 O HOH A 2072 1.30 REMARK 500 O SER B 503 O HOH B 2045 2.19 REMARK 500 O HOH A 2004 O HOH B 2035 1.95 REMARK 500 O HOH A 2005 O HOH A 2016 1.90 REMARK 500 O HOH B 2004 O HOH B 2016 2.01 REMARK 500 O HOH B 2035 O HOH A 2081 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 467 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 125 40.45 70.57 REMARK 500 SER A 158 -6.51 84.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1175 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 25 OG REMARK 620 2 THR A 43 OG1 79.9 REMARK 620 3 GNP A1174 O1G 173.7 94.5 REMARK 620 4 GNP A1174 O2B 92.1 170.5 93.1 REMARK 620 5 HOH A2022 O 90.1 89.9 93.0 95.3 REMARK 620 6 HOH A2024 O 88.6 89.6 88.3 85.1 178.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1175 REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINALLY AND C-TERMINALLY TRUNCATED RAB11A, WITH A FEW REMARK 999 NON-NATIVE RESIDUES AT N-TERMINUS FROM CLONING SITE. FIP2 REMARK 999 CONSISTS OF C-TERMINAL RAB-BINDING DOMAIN. DBREF 4C4P A 1 173 UNP P62491 RB11A_HUMAN 1 173 DBREF 4C4P B 410 512 UNP Q7L804 RFIP2_HUMAN 410 512 SEQADV 4C4P GLY B 406 UNP Q7L804 EXPRESSION TAG SEQADV 4C4P ALA B 407 UNP Q7L804 EXPRESSION TAG SEQADV 4C4P MET B 408 UNP Q7L804 EXPRESSION TAG SEQADV 4C4P ALA B 409 UNP Q7L804 EXPRESSION TAG SEQRES 1 A 173 MET GLY THR ARG ASP ASP GLU TYR ASP TYR LEU PHE LYS SEQRES 2 A 173 VAL VAL LEU ILE GLY ASP SER GLY VAL GLY LYS SER ASN SEQRES 3 A 173 LEU LEU SER ARG PHE THR ARG ASN GLU PHE ASN LEU GLU SEQRES 4 A 173 SER LYS SER THR ILE GLY VAL GLU PHE ALA THR ARG SER SEQRES 5 A 173 ILE GLN VAL ASP GLY LYS THR ILE LYS ALA GLN ILE TRP SEQRES 6 A 173 ASP THR ALA GLY GLN GLU ARG TYR ARG ALA ILE THR SER SEQRES 7 A 173 ALA TYR TYR ARG GLY ALA VAL GLY ALA LEU LEU VAL TYR SEQRES 8 A 173 ASP ILE ALA LYS HIS LEU THR TYR GLU ASN VAL GLU ARG SEQRES 9 A 173 TRP LEU LYS GLU LEU ARG ASP HIS ALA ASP SER ASN ILE SEQRES 10 A 173 VAL ILE MET LEU VAL GLY ASN LYS SER ASP LEU ARG HIS SEQRES 11 A 173 LEU ARG ALA VAL PRO THR ASP GLU ALA ARG ALA PHE ALA SEQRES 12 A 173 GLU LYS ASN GLY LEU SER PHE ILE GLU THR SER ALA LEU SEQRES 13 A 173 ASP SER THR ASN VAL GLU ALA ALA PHE GLN THR ILE LEU SEQRES 14 A 173 THR GLU ILE TYR SEQRES 1 B 107 GLY ALA MET ALA ALA LYS PHE ARG ALA SER ASN ILE MET SEQRES 2 B 107 PRO SER SER SER PHE HIS MET SER PRO THR SER ASN GLU SEQRES 3 B 107 ASP LEU ARG LYS ILE PRO ASP SER ASN PRO PHE ASP ALA SEQRES 4 B 107 THR ALA GLY TYR ARG SER LEU THR TYR GLU GLU VAL LEU SEQRES 5 B 107 GLN GLU LEU VAL LYS HIS LYS GLU LEU LEU ARG ARG LYS SEQRES 6 B 107 ASP THR HIS ILE ARG GLU LEU GLU ASP TYR ILE ASP ASN SEQRES 7 B 107 LEU LEU VAL ARG VAL MET GLU GLU THR PRO SER ILE LEU SEQRES 8 B 107 ARG VAL PRO TYR GLU PRO SER ARG LYS ALA GLY LYS PHE SEQRES 9 B 107 SER ASN SER HET GNP A1174 41 HET MG A1175 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *176(H2 O) HELIX 1 1 GLY A 23 ASN A 34 1 12 HELIX 2 2 ILE A 76 ARG A 82 1 7 HELIX 3 3 LYS A 95 ASN A 101 1 7 HELIX 4 4 ASN A 101 ALA A 113 1 13 HELIX 5 5 LEU A 128 ARG A 132 5 5 HELIX 6 6 PRO A 135 ASN A 146 1 12 HELIX 7 7 ASN A 160 GLU A 171 1 12 HELIX 8 8 THR B 452 THR B 492 1 41 HELIX 9 9 PRO B 493 ILE B 495 5 3 SHEET 1 AA 7 SER A 149 GLU A 152 0 SHEET 2 AA 7 VAL A 118 ASN A 124 1 O ILE A 119 N SER A 149 SHEET 3 AA 7 ALA A 84 ASP A 92 1 O VAL A 85 N VAL A 118 SHEET 4 AA 7 TYR A 10 ILE A 17 1 O LYS A 13 N VAL A 85 SHEET 5 AA 7 LYS A 58 THR A 67 1 O LYS A 61 N PHE A 12 SHEET 6 AA 7 VAL A 46 VAL A 55 -1 O GLU A 47 N ASP A 66 SHEET 7 AA 7 ARG B 497 VAL B 498 1 O VAL B 498 N THR A 50 LINK O1G GNP A1174 MG MG A1175 1555 1555 1.94 LINK O2B GNP A1174 MG MG A1175 1555 1555 2.04 LINK MG MG A1175 O HOH A2022 1555 1555 2.08 LINK MG MG A1175 OG1 THR A 43 1555 1555 2.08 LINK MG MG A1175 O HOH A2024 1555 1555 2.07 LINK MG MG A1175 OG SER A 25 1555 1555 2.05 CISPEP 1 VAL B 498 PRO B 499 0 -2.83 SITE 1 AC1 28 SER A 20 GLY A 21 VAL A 22 GLY A 23 SITE 2 AC1 28 LYS A 24 SER A 25 ASN A 26 PHE A 36 SITE 3 AC1 28 ASN A 37 LEU A 38 SER A 40 SER A 42 SITE 4 AC1 28 THR A 43 ALA A 68 GLY A 69 ASN A 124 SITE 5 AC1 28 LYS A 125 ASP A 127 LEU A 128 SER A 154 SITE 6 AC1 28 ALA A 155 LEU A 156 MG A1175 HOH A2022 SITE 7 AC1 28 HOH A2024 HOH A2041 HOH A2130 HOH A2131 SITE 1 AC2 5 SER A 25 THR A 43 GNP A1174 HOH A2022 SITE 2 AC2 5 HOH A2024 CRYST1 64.560 64.560 112.860 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015489 0.008943 0.000000 0.00000 SCALE2 0.000000 0.017886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008861 0.00000