HEADER HYDROLASE 06-MAY-11 3RVA TITLE CRYSTAL STRUCTURE OF ORGANOPHOSPHORUS ACID ANHYDROLASE FROM TITLE 2 ALTEROMONAS MACLEODII COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORGANOPHOSPHORUS ACID ANHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.8.2, 3.4.13.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALTEROMONAS MACLEODII; SOURCE 3 ORGANISM_TAXID: 28108; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-30(+) KEYWDS ORGANOPHOSPHORUS ACID ANHYDROLASE, PITA-BREAD FOLD, BINUCLEAR METAL KEYWDS 2 CENTER, BI-FUNCTIONAL, PROLIDASE, NERVE AGENTS, XAA-PRO DIPEPTIDES, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.STEPANKOVA,T.KOVAL,L.H.OSTERGAARD,J.DUSKOVA,T.SKALOVA,J.HASEK, AUTHOR 2 J.DOHNALEK REVDAT 4 13-SEP-23 3RVA 1 REMARK LINK REVDAT 3 31-JAN-18 3RVA 1 JRNL REVDAT 2 10-APR-13 3RVA 1 JRNL REVDAT 1 09-MAY-12 3RVA 0 JRNL AUTH A.STEPANKOVA,J.DUSKOVA,T.SKALOVA,J.HASEK,T.KOVAL, JRNL AUTH 2 L.H.OSTERGAARD,J.DOHNALEK JRNL TITL ORGANOPHOSPHORUS ACID ANHYDROLASE FROM ALTEROMONAS JRNL TITL 2 MACLEODII: STRUCTURAL STUDY AND FUNCTIONAL RELATIONSHIP TO JRNL TITL 3 PROLIDASES. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 346 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23545636 JRNL DOI 10.1107/S1744309113002674 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0111 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : CCP4 6.1.3 STEREOCHEMISTRY LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 47975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RFREE THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2371 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3274 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3579 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 464 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3776 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2543 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5151 ; 1.337 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6204 ; 0.870 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 9.504 ; 5.043 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;32.397 ;24.279 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;12.064 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.682 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4249 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 778 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN GENERATED AND USED REMARK 3 ONLY IN REFINEMENT. STRUCTURE SOLUTION AND REFINEMENT WERE REMARK 3 PERFORMED USING FREE R FOR CROSS-VALIDATION THROUGHOUT: FREE R = REMARK 3 0.185 (FREE R = 0.2610 FOR THE HIGHEST RESOLUTION SHELL) FROM A REMARK 3 RANDOM TEST SET COMPRISING 5% OF REFLECTIONS (47975 TOTAL). REMARK 3 FINAL REFINEMENT WAS PERFORMED USING ALL REFLECTIONS. REMARK 4 REMARK 4 3RVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : KMC-1, SI (111) REMARK 200 OPTICS : 2 MIRRORS AND A DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3L24 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 1.344 M POTASSIUM PHOSPHATE DIBASIC, PH 8.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.88500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.88500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -55.87367 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.70702 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 677 O HOH A 678 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 75 -56.43 -126.13 REMARK 500 ASN A 219 -132.08 54.85 REMARK 500 HIS A 226 46.35 -105.87 REMARK 500 HIS A 366 59.64 -141.69 REMARK 500 PHE A 389 79.53 -119.39 REMARK 500 ASN A 443 -120.42 -106.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 455 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 2 N REMARK 620 2 GLN A 3 N 78.9 REMARK 620 3 HIS A 4 ND1 101.5 157.9 REMARK 620 4 HIS A 4 N 156.0 82.3 90.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 452 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 244 OD2 REMARK 620 2 ASP A 244 OD1 55.8 REMARK 620 3 ASP A 255 OD1 140.9 87.5 REMARK 620 4 GLU A 423 OE1 109.4 102.6 89.9 REMARK 620 5 HOH A 460 O 102.2 155.1 109.6 95.6 REMARK 620 6 HOH A 857 O 85.7 92.4 82.7 162.9 72.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 453 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 255 OD2 REMARK 620 2 HIS A 339 NE2 91.4 REMARK 620 3 GLU A 384 OE2 167.5 83.5 REMARK 620 4 GLU A 423 OE2 93.9 131.9 81.2 REMARK 620 5 HOH A 460 O 106.3 121.7 86.0 102.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 455 DBREF 3RVA A 1 451 PDB 3RVA 3RVA 1 451 SEQRES 1 A 451 MET SER GLN HIS LYS ALA THR TYR GLN GLN HIS ILE GLU SEQRES 2 A 451 GLU LEU GLN ALA ARG THR ARG GLU ALA LEU GLN ARG GLU SEQRES 3 A 451 GLY LEU ASP GLY LEU VAL ILE HIS SER GLY GLN GLY LYS SEQRES 4 A 451 ARG LEU PHE LEU ASP ASP ASN HIS TYR PRO PHE LYS VAL SEQRES 5 A 451 ASN PRO GLN PHE LYS ALA TRP VAL PRO VAL ILE ASP ASN SEQRES 6 A 451 PRO ASN CYS TRP LEU VAL VAL ASN GLY VAL ASP LYS PRO SEQRES 7 A 451 THR LEU ILE PHE TYR ARG PRO GLU ASP PHE TRP HIS LYS SEQRES 8 A 451 VAL PRO PRO GLU PRO ASN ASP PHE TRP THR ASP SER PHE SEQRES 9 A 451 ASP ILE LYS LEU LEU GLN GLN ALA ASP ALA VAL GLU LYS SEQRES 10 A 451 PHE LEU PRO TYR ASP LYS SER ARG PHE ALA TYR VAL GLY SEQRES 11 A 451 GLU TYR ILE GLU VAL ALA LYS ALA LEU GLY PHE ASP ASN SEQRES 12 A 451 VAL ASN PRO ASP ARG VAL LEU HIS TYR LEU HIS TYR GLN SEQRES 13 A 451 ARG ALA TYR LYS THR ASP TYR GLU LEU ASP CYS MET ARG SEQRES 14 A 451 GLU ALA ASN LYS LEU ALA VAL ALA GLY HIS LYS ALA ALA SEQRES 15 A 451 GLU GLN ALA PHE ARG GLU GLY LYS SER GLU PHE ASP ILE SEQRES 16 A 451 ASN LEU ALA TYR ALA ALA ALA SER ARG GLN GLY ASP ASN SEQRES 17 A 451 ASP VAL PRO TYR THR SER ILE VAL ALA LEU ASN GLU HIS SEQRES 18 A 451 ALA SER ILE LEU HIS TYR MET GLN CSO ASP THR VAL ALA SEQRES 19 A 451 PRO LYS GLU SER ARG SER PHE LEU ILE ASP ALA GLY ALA SEQRES 20 A 451 ASN TYR HIS GLY TYR ALA ALA ASP ILE THR ARG THR TYR SEQRES 21 A 451 ALA GLN GLU GLY VAL HIS ASN SER ALA MET PHE ARG ASP SEQRES 22 A 451 LEU ILE GLN ALA VAL ASP LYS VAL THR LEU THR LEU VAL SEQRES 23 A 451 ASP SER LEU LYS PRO GLY VAL ALA TYR THR ASP ILE HIS SEQRES 24 A 451 LEU LEU ALA HIS ASP GLY ILE ALA GLN ILE LEU HIS ASP SEQRES 25 A 451 THR GLY MET VAL ASN LEU THR PRO PRO GLU ILE VAL GLU SEQRES 26 A 451 MET GLY ILE THR ARG THR PHE PHE PRO HIS GLY ILE GLY SEQRES 27 A 451 HIS PHE LEU GLY LEU GLN VAL HIS ASP VAL GLY GLY LEU SEQRES 28 A 451 VAL ASN ASP ASP ARG GLY THR PRO LYS PRO ALA PRO ASP SEQRES 29 A 451 ASP HIS PRO PHE LEU ARG CYS THR ARG MET VAL GLU ALA SEQRES 30 A 451 ARG GLN VAL PHE THR ILE GLU PRO GLY LEU TYR PHE ILE SEQRES 31 A 451 ASP SER LEU LEU ARG ASP LEU LYS ALA THR PRO ALA SER SEQRES 32 A 451 LYS TYR ILE ASN TRP ASP THR ILE ASP ALA TYR LYS PRO SEQRES 33 A 451 PHE GLY GLY ILE ARG ILE GLU ASP ASN ILE ILE VAL HIS SEQRES 34 A 451 ARG ASP LYS ASN GLU ASN MET THR ARG ASP LEU ASP LEU SEQRES 35 A 451 ASN LEU GLU HIS HIS HIS HIS HIS HIS MODRES 3RVA CSO A 230 CYS S-HYDROXYCYSTEINE HET CSO A 230 7 HET MN A 452 1 HET MN A 453 1 HET PO4 A 454 5 HET NI A 455 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION HETNAM NI NICKEL (II) ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 MN 2(MN 2+) FORMUL 4 PO4 O4 P 3- FORMUL 5 NI NI 2+ FORMUL 6 HOH *464(H2 O) HELIX 1 1 GLN A 3 GLY A 27 1 25 HELIX 2 2 ASN A 53 ALA A 58 1 6 HELIX 3 3 TRP A 100 PHE A 104 5 5 HELIX 4 4 GLN A 111 LEU A 119 5 9 HELIX 5 5 ASP A 122 SER A 124 5 3 HELIX 6 6 TYR A 132 GLY A 140 1 9 HELIX 7 7 PRO A 146 ALA A 158 1 13 HELIX 8 8 THR A 161 GLU A 188 1 28 HELIX 9 9 SER A 191 ARG A 204 1 14 HELIX 10 10 GLU A 220 ILE A 224 5 5 HELIX 11 11 ASN A 267 LEU A 289 1 23 HELIX 12 12 ALA A 294 THR A 313 1 20 HELIX 13 13 THR A 319 MET A 326 1 8 HELIX 14 14 ILE A 328 PHE A 333 1 6 HELIX 15 15 ILE A 390 ALA A 399 1 10 HELIX 16 16 THR A 400 ILE A 406 5 7 HELIX 17 17 ASN A 407 LYS A 415 1 9 HELIX 18 18 MET A 436 LEU A 440 1 5 SHEET 1 A 5 ASP A 105 LEU A 109 0 SHEET 2 A 5 THR A 79 TYR A 83 1 N PHE A 82 O LYS A 107 SHEET 3 A 5 TRP A 69 VAL A 72 -1 N TRP A 69 O ILE A 81 SHEET 4 A 5 GLY A 30 HIS A 34 -1 N ILE A 33 O LEU A 70 SHEET 5 A 5 PHE A 126 VAL A 129 1 O VAL A 129 N VAL A 32 SHEET 1 B 3 ILE A 215 LEU A 218 0 SHEET 2 B 3 SER A 240 TYR A 249 -1 O ASP A 244 N ILE A 215 SHEET 3 B 3 TYR A 252 ALA A 261 -1 O ARG A 258 N ILE A 243 SHEET 1 C 3 VAL A 380 ILE A 383 0 SHEET 2 C 3 ASP A 424 VAL A 428 -1 O ILE A 426 N PHE A 381 SHEET 3 C 3 ASN A 433 ASN A 435 -1 O GLU A 434 N ILE A 427 SHEET 1 D 2 GLY A 386 TYR A 388 0 SHEET 2 D 2 GLY A 419 ARG A 421 -1 O ILE A 420 N LEU A 387 LINK C GLN A 229 N CSO A 230 1555 1555 1.33 LINK C CSO A 230 N ASP A 231 1555 1555 1.33 LINK N SER A 2 NI NI A 455 1555 1555 2.41 LINK N GLN A 3 NI NI A 455 1555 1555 2.08 LINK ND1 HIS A 4 NI NI A 455 1555 1555 2.09 LINK N HIS A 4 NI NI A 455 1555 1555 2.10 LINK OD2 ASP A 244 MN MN A 452 1555 1555 2.39 LINK OD1 ASP A 244 MN MN A 452 1555 1555 2.42 LINK OD1 ASP A 255 MN MN A 452 1555 1555 2.16 LINK OD2 ASP A 255 MN MN A 453 1555 1555 2.20 LINK NE2 HIS A 339 MN MN A 453 1555 1555 2.20 LINK OE2 GLU A 384 MN MN A 453 1555 1555 2.59 LINK OE1 GLU A 423 MN MN A 452 1555 1555 2.28 LINK OE2 GLU A 423 MN MN A 453 1555 1555 1.99 LINK MN MN A 452 O HOH A 460 1555 1555 2.28 LINK MN MN A 452 O HOH A 857 1555 1555 2.46 LINK MN MN A 453 O HOH A 460 1555 1555 2.20 SITE 1 AC1 7 ASP A 244 ASP A 255 THR A 257 GLU A 423 SITE 2 AC1 7 MN A 453 HOH A 460 HOH A 857 SITE 1 AC2 8 ASP A 255 HIS A 339 THR A 382 GLU A 384 SITE 2 AC2 8 GLU A 423 MN A 452 HOH A 459 HOH A 460 SITE 1 AC3 3 LYS A 91 HIS A 221 HOH A 801 SITE 1 AC4 4 SER A 2 GLN A 3 HIS A 4 ASP A 76 CRYST1 133.770 49.190 97.340 90.00 125.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007476 0.000000 0.005240 0.00000 SCALE2 0.000000 0.020329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012546 0.00000