HEADER OXIDOREDUCTASE 24-NOV-10 3PP8 TITLE 2.1 ANGSTROM CRYSTAL STRUCTURE OF PUTATIVE OXIDOREDUCTASE (YCDW) FROM TITLE 2 SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-KETOACID REDUCTASE; COMPND 5 EC: 1.1.1.79, 1.1.1.81; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2; SOURCE 6 GENE: GHRA, STM1135, YCDW; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG19C KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE, NAD KEYWDS 3 BINDING DOMAIN, OXIDATION REDUCTION, NAD, NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WAWRZAK,T.SKARINA,Y.WANG,L.PAPAZISI,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 06-SEP-23 3PP8 1 SEQADV LINK REVDAT 2 08-NOV-17 3PP8 1 REMARK REVDAT 1 08-DEC-10 3PP8 0 JRNL AUTH G.MINASOV,Z.WAWRZAK,T.SKARINA,Y.WANG,L.PAPAZISI,A.SAVCHENKO, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.1 ANGSTROM CRYSTAL STRUCTURE OF PUTATIVE OXIDOREDUCTASE JRNL TITL 2 (YCDW) FROM SALMONELLA TYPHIMURIUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 967 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1291 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2449 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : 1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.235 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2532 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1722 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3451 ; 1.396 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4181 ; 0.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 3.508 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;31.600 ;23.590 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;13.422 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2828 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 518 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 1.314 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 623 ; 0.410 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2509 ; 2.144 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 972 ; 3.565 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 942 ; 4.972 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9651 36.2169 71.8632 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.2548 REMARK 3 T33: 0.3356 T12: -0.0378 REMARK 3 T13: 0.0535 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 4.4359 L22: 7.3629 REMARK 3 L33: 4.9667 L12: 3.8589 REMARK 3 L13: 1.7786 L23: 1.9272 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: -0.2814 S13: -0.7142 REMARK 3 S21: -0.3870 S22: 0.2385 S23: -1.3512 REMARK 3 S31: -0.7153 S32: 0.3893 S33: -0.2018 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1160 68.6223 49.2961 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.1441 REMARK 3 T33: 0.0889 T12: 0.0350 REMARK 3 T13: -0.0082 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.9892 L22: 9.5928 REMARK 3 L33: 4.6662 L12: 0.9073 REMARK 3 L13: 0.4046 L23: 5.3444 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.0953 S13: -0.1008 REMARK 3 S21: -0.7811 S22: -0.2100 S23: 0.2619 REMARK 3 S31: -0.5267 S32: -0.3469 S33: 0.2205 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8055 55.3776 44.4945 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.1177 REMARK 3 T33: 0.0735 T12: -0.0278 REMARK 3 T13: 0.0166 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 1.7477 L22: 8.9258 REMARK 3 L33: 3.3335 L12: -0.9234 REMARK 3 L13: -0.0159 L23: 3.2510 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.1722 S13: -0.1598 REMARK 3 S21: -0.2496 S22: -0.1197 S23: -0.0339 REMARK 3 S31: 0.0182 S32: -0.1328 S33: 0.1039 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 280 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3766 41.8095 69.3173 REMARK 3 T TENSOR REMARK 3 T11: 0.3956 T22: 0.2464 REMARK 3 T33: 0.1446 T12: 0.0539 REMARK 3 T13: 0.0076 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 6.2747 L22: 7.5079 REMARK 3 L33: 6.6706 L12: 2.9158 REMARK 3 L13: -1.6067 L23: 0.2453 REMARK 3 S TENSOR REMARK 3 S11: 0.3796 S12: 0.3276 S13: 0.3878 REMARK 3 S21: -0.6438 S22: -0.0859 S23: 0.4163 REMARK 3 S31: -0.7837 S32: -0.5926 S33: -0.2936 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18836 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3KBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 0.3M SODIUM REMARK 280 CHLORIDE, 10MM HEPES (PH 7.5). SCREEN SOLUTION: 0.2M SODIUM REMARK 280 ACETATE, 0.1M BIS-TRIS (PH 6.5), 0.01M GLYCOLIC ACID, 30% PEG REMARK 280 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.52150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.52150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.24750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.68550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.24750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.68550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.52150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.24750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.68550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.52150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.24750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.68550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 139.37100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 111.04300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 91 REMARK 465 ASP A 92 REMARK 465 ARG A 310 REMARK 465 GLY A 311 REMARK 465 TYR A 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -1 33.04 -146.97 REMARK 500 PHE A 137 61.38 -110.41 REMARK 500 ALA A 226 -87.15 -106.72 REMARK 500 ARG A 308 47.96 -100.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KBO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PUTATIVE OXIDOREDUCTASE (YCDW) FROM SALMONELLA REMARK 900 TYPHIMURIUM IN COMPLEX WITH NADP. REMARK 900 RELATED ID: IDP00951 RELATED DB: TARGETDB DBREF 3PP8 A 1 312 UNP Q8ZQ30 GHRA_SALTY 1 312 SEQADV 3PP8 SER A -2 UNP Q8ZQ30 EXPRESSION TAG SEQADV 3PP8 ASN A -1 UNP Q8ZQ30 EXPRESSION TAG SEQADV 3PP8 ALA A 0 UNP Q8ZQ30 EXPRESSION TAG SEQRES 1 A 315 SER ASN ALA MSE GLU ILE ILE PHE TYR HIS PRO THR PHE SEQRES 2 A 315 ASN ALA ALA TRP TRP VAL ASN ALA LEU GLU LYS ALA LEU SEQRES 3 A 315 PRO HIS ALA ARG VAL ARG GLU TRP LYS VAL GLY ASP ASN SEQRES 4 A 315 ASN PRO ALA ASP TYR ALA LEU VAL TRP GLN PRO PRO VAL SEQRES 5 A 315 GLU MSE LEU ALA GLY ARG ARG LEU LYS ALA VAL PHE VAL SEQRES 6 A 315 LEU GLY ALA GLY VAL ASP ALA ILE LEU SER LYS LEU ASN SEQRES 7 A 315 ALA HIS PRO GLU MSE LEU ASP ALA SER ILE PRO LEU PHE SEQRES 8 A 315 ARG LEU GLU ASP THR GLY MSE GLY LEU GLN MSE GLN GLU SEQRES 9 A 315 TYR ALA VAL SER GLN VAL LEU HIS TRP PHE ARG ARG PHE SEQRES 10 A 315 ASP ASP TYR GLN ALA LEU LYS ASN GLN ALA LEU TRP LYS SEQRES 11 A 315 PRO LEU PRO GLU TYR THR ARG GLU GLU PHE SER VAL GLY SEQRES 12 A 315 ILE MSE GLY ALA GLY VAL LEU GLY ALA LYS VAL ALA GLU SEQRES 13 A 315 SER LEU GLN ALA TRP GLY PHE PRO LEU ARG CYS TRP SER SEQRES 14 A 315 ARG SER ARG LYS SER TRP PRO GLY VAL GLU SER TYR VAL SEQRES 15 A 315 GLY ARG GLU GLU LEU ARG ALA PHE LEU ASN GLN THR ARG SEQRES 16 A 315 VAL LEU ILE ASN LEU LEU PRO ASN THR ALA GLN THR VAL SEQRES 17 A 315 GLY ILE ILE ASN SER GLU LEU LEU ASP GLN LEU PRO ASP SEQRES 18 A 315 GLY ALA TYR VAL LEU ASN LEU ALA ARG GLY VAL HIS VAL SEQRES 19 A 315 GLN GLU ALA ASP LEU LEU ALA ALA LEU ASP SER GLY LYS SEQRES 20 A 315 LEU LYS GLY ALA MSE LEU ASP VAL PHE SER GLN GLU PRO SEQRES 21 A 315 LEU PRO GLN GLU SER PRO LEU TRP ARG HIS PRO ARG VAL SEQRES 22 A 315 ALA MSE THR PRO HIS ILE ALA ALA VAL THR ARG PRO ALA SEQRES 23 A 315 GLU ALA ILE ASP TYR ILE SER ARG THR ILE THR GLN LEU SEQRES 24 A 315 GLU LYS GLY GLU PRO VAL THR GLY GLN VAL ASP ARG ALA SEQRES 25 A 315 ARG GLY TYR MODRES 3PP8 MSE A 1 MET SELENOMETHIONINE MODRES 3PP8 MSE A 51 MET SELENOMETHIONINE MODRES 3PP8 MSE A 80 MET SELENOMETHIONINE MODRES 3PP8 MSE A 95 MET SELENOMETHIONINE MODRES 3PP8 MSE A 99 MET SELENOMETHIONINE MODRES 3PP8 MSE A 142 MET SELENOMETHIONINE MODRES 3PP8 MSE A 249 MET SELENOMETHIONINE MODRES 3PP8 MSE A 272 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 51 8 HET MSE A 80 8 HET MSE A 95 8 HET MSE A 99 8 HET MSE A 142 8 HET MSE A 249 8 HET MSE A 272 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 HOH *82(H2 O) HELIX 1 1 ASN A 11 LEU A 23 1 13 HELIX 2 2 PRO A 48 ALA A 53 1 6 HELIX 3 3 VAL A 67 HIS A 77 1 11 HELIX 4 4 MSE A 95 ARG A 112 1 18 HELIX 5 5 ARG A 113 GLN A 123 1 11 HELIX 6 6 GLY A 145 ALA A 157 1 13 HELIX 7 7 GLY A 180 GLN A 190 1 11 HELIX 8 8 THR A 201 VAL A 205 5 5 HELIX 9 9 ASN A 209 ASP A 214 1 6 HELIX 10 10 ARG A 227 VAL A 231 5 5 HELIX 11 11 GLN A 232 SER A 242 1 11 HELIX 12 12 SER A 262 HIS A 267 5 6 HELIX 13 13 ARG A 281 GLY A 299 1 19 SHEET 1 A 5 ALA A 26 GLU A 30 0 SHEET 2 A 5 MSE A 1 TYR A 6 1 N ILE A 3 O ARG A 27 SHEET 3 A 5 TYR A 41 VAL A 44 1 O LEU A 43 N ILE A 4 SHEET 4 A 5 ALA A 59 VAL A 62 1 O PHE A 61 N ALA A 42 SHEET 5 A 5 LEU A 87 ARG A 89 1 O PHE A 88 N VAL A 62 SHEET 1 B 7 GLU A 176 VAL A 179 0 SHEET 2 B 7 LEU A 162 SER A 166 1 N CYS A 164 O TYR A 178 SHEET 3 B 7 VAL A 139 MSE A 142 1 N ILE A 141 O ARG A 163 SHEET 4 B 7 VAL A 193 ASN A 196 1 O VAL A 193 N GLY A 140 SHEET 5 B 7 ALA A 220 ASN A 224 1 O TYR A 221 N LEU A 194 SHEET 6 B 7 LEU A 245 LEU A 250 1 O MSE A 249 N VAL A 222 SHEET 7 B 7 VAL A 270 MSE A 272 1 O ALA A 271 N LEU A 250 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C AGLU A 50 N MSE A 51 1555 1555 1.33 LINK C BGLU A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N LEU A 52 1555 1555 1.34 LINK C GLU A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N LEU A 81 1555 1555 1.32 LINK C GLY A 94 N MSE A 95 1555 1555 1.35 LINK C MSE A 95 N GLY A 96 1555 1555 1.32 LINK C GLN A 98 N MSE A 99 1555 1555 1.31 LINK C MSE A 99 N GLN A 100 1555 1555 1.32 LINK C ILE A 141 N MSE A 142 1555 1555 1.32 LINK C MSE A 142 N GLY A 143 1555 1555 1.33 LINK C ALA A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N LEU A 250 1555 1555 1.33 LINK C ALA A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N THR A 273 1555 1555 1.33 CISPEP 1 SER A -2 ASN A -1 0 0.62 CISPEP 2 GLU A 256 PRO A 257 0 -1.96 CRYST1 40.495 139.371 111.043 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009006 0.00000