HEADER HYDROLASE/HYDROLASE INHIBITOR 17-AUG-10 3OGP TITLE CRYSTAL STRUCTURE OF 6S-98S FIV PROTEASE WITH DARUNAVIR BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIV PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 39-154; COMPND 5 SYNONYM: PROTEASE, RETROPEPSIN; COMPND 6 EC: 3.4.23.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE IMMUNODEFICIENCY VIRUS; SOURCE 3 ORGANISM_COMMON: FIV; SOURCE 4 ORGANISM_TAXID: 11673; SOURCE 5 GENE: POL, PR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS ASPARTYL PROTEASE, HIV-LIKE FIV CHIMERA, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.LIN,A.L.PERRYMAN,J.H.ELDER,C.D.STOUT REVDAT 2 28-MAR-12 3OGP 1 JRNL VERSN REVDAT 1 08-JUN-11 3OGP 0 JRNL AUTH Y.C.LIN,A.L.PERRYMAN,A.J.OLSON,B.E.TORBETT,J.H.ELDER, JRNL AUTH 2 C.D.STOUT JRNL TITL STRUCTURAL BASIS FOR DRUG AND SUBSTRATE SPECIFICITY JRNL TITL 2 EXHIBITED BY FIV ENCODING A CHIMERIC FIV/HIV PROTEASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 540 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 21636894 JRNL DOI 10.1107/S0907444911011681 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1798 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.75000 REMARK 3 B22 (A**2) : 5.75000 REMARK 3 B33 (A**2) : -11.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.479 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2105 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3207 ; 1.285 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 7.923 ; 7.500 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;29.789 ;24.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 344 ;17.646 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2272 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1101 ; 0.637 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1788 ; 1.116 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 782 ; 1.496 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 749 ; 2.226 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.500 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H, -H-K, -L REMARK 3 TWIN FRACTION : 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3OGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB061093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27120 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : 0.34600 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2HAH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.19667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.39333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 TYR B 1 REMARK 465 ASN B 2 REMARK 465 LYS B 3 REMARK 465 VAL B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 80 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 6 95.61 -66.59 REMARK 500 LYS A 46 -128.05 48.28 REMARK 500 ASP A 77 135.87 -37.00 REMARK 500 GLU A 78 -164.14 88.47 REMARK 500 TYR A 80 -52.96 104.81 REMARK 500 LYS A 81 58.38 72.77 REMARK 500 LYS B 46 -123.45 52.84 REMARK 500 GLU B 78 -73.39 59.79 REMARK 500 LYS B 81 49.53 -107.56 REMARK 500 THR B 82 99.98 -54.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 80 LYS A 81 73.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TYR A 80 16.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 421 DISTANCE = 9.92 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 017 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 017 B 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B11 RELATED DB: PDB REMARK 900 WILD TYPE FIV PROTEASE REMARK 900 RELATED ID: 2HAH RELATED DB: PDB REMARK 900 12S MUTANT OF FIV PROTEASE REMARK 900 RELATED ID: 3OGQ RELATED DB: PDB REMARK 900 6S-98S FIV PROTEASE WITH LOPINAVIR BOUND DBREF 3OGP A 1 116 UNP P16088 POL_FIVPE 39 154 DBREF 3OGP B 1 116 UNP P16088 POL_FIVPE 39 154 SEQADV 3OGP VAL A 37 UNP P16088 ILE 75 ENGINEERED MUTATION SEQADV 3OGP MET A 55 UNP P16088 ASN 93 ENGINEERED MUTATION SEQADV 3OGP ILE A 59 UNP P16088 VAL 97 ENGINEERED MUTATION SEQADV 3OGP SER A 98 UNP P16088 ILE 136 ENGINEERED MUTATION SEQADV 3OGP VAL A 99 UNP P16088 GLN 137 ENGINEERED MUTATION SEQADV 3OGP ASN A 100 UNP P16088 PRO 138 ENGINEERED MUTATION SEQADV 3OGP VAL B 37 UNP P16088 ILE 75 ENGINEERED MUTATION SEQADV 3OGP MET B 55 UNP P16088 ASN 93 ENGINEERED MUTATION SEQADV 3OGP ILE B 59 UNP P16088 VAL 97 ENGINEERED MUTATION SEQADV 3OGP SER B 98 UNP P16088 ILE 136 ENGINEERED MUTATION SEQADV 3OGP VAL B 99 UNP P16088 GLN 137 ENGINEERED MUTATION SEQADV 3OGP ASN B 100 UNP P16088 PRO 138 ENGINEERED MUTATION SEQRES 1 A 116 TYR ASN LYS VAL GLY THR THR THR THR LEU GLU LYS ARG SEQRES 2 A 116 PRO GLU ILE LEU ILE PHE VAL ASN GLY TYR PRO ILE LYS SEQRES 3 A 116 PHE LEU LEU ASP THR GLY ALA ASP ILE THR VAL LEU ASN SEQRES 4 A 116 ARG ARG ASP PHE GLN VAL LYS ASN SER ILE GLU ASN GLY SEQRES 5 A 116 ARG GLN MET MET ILE GLY ILE GLY GLY GLY LYS ARG GLY SEQRES 6 A 116 THR ASN TYR ILE ASN VAL HIS LEU GLU ILE ARG ASP GLU SEQRES 7 A 116 ASN TYR LYS THR GLN CYS ILE PHE GLY ASN VAL CYS VAL SEQRES 8 A 116 LEU GLU ASP ASN SER LEU SER VAL ASN LEU LEU GLY ARG SEQRES 9 A 116 ASP ASN MET ILE LYS PHE ASN ILE ARG LEU VAL MET SEQRES 1 B 116 TYR ASN LYS VAL GLY THR THR THR THR LEU GLU LYS ARG SEQRES 2 B 116 PRO GLU ILE LEU ILE PHE VAL ASN GLY TYR PRO ILE LYS SEQRES 3 B 116 PHE LEU LEU ASP THR GLY ALA ASP ILE THR VAL LEU ASN SEQRES 4 B 116 ARG ARG ASP PHE GLN VAL LYS ASN SER ILE GLU ASN GLY SEQRES 5 B 116 ARG GLN MET MET ILE GLY ILE GLY GLY GLY LYS ARG GLY SEQRES 6 B 116 THR ASN TYR ILE ASN VAL HIS LEU GLU ILE ARG ASP GLU SEQRES 7 B 116 ASN TYR LYS THR GLN CYS ILE PHE GLY ASN VAL CYS VAL SEQRES 8 B 116 LEU GLU ASP ASN SER LEU SER VAL ASN LEU LEU GLY ARG SEQRES 9 B 116 ASP ASN MET ILE LYS PHE ASN ILE ARG LEU VAL MET HET 017 A 200 38 HET DMS A 202 4 HET 017 B 200 38 HETNAM 017 (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3- HETNAM 2 017 [[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2- HETNAM 3 017 HYDROXYPROPYLCARBAMATE HETNAM DMS DIMETHYL SULFOXIDE HETSYN 017 DARUNAVIR, TMC114, UIC-94017 FORMUL 3 017 2(C27 H37 N3 O7 S) FORMUL 4 DMS C2 H6 O S FORMUL 6 HOH *158(H2 O) HELIX 1 1 ARG A 41 PHE A 43 5 3 HELIX 2 2 GLY A 103 ILE A 108 1 6 HELIX 3 3 ARG B 41 PHE B 43 5 3 HELIX 4 4 GLY B 103 PHE B 110 1 8 SHEET 1 A 4 THR A 7 THR A 8 0 SHEET 2 A 4 ARG B 113 VAL B 115 -1 O LEU B 114 N THR A 8 SHEET 3 A 4 ARG A 113 VAL A 115 -1 N VAL A 115 O ARG B 113 SHEET 4 A 4 THR B 7 THR B 8 -1 O THR B 8 N LEU A 114 SHEET 1 B 8 ILE A 49 GLY A 58 0 SHEET 2 B 8 GLY A 61 ILE A 75 -1 O ILE A 69 N ILE A 49 SHEET 3 B 8 GLN A 83 LEU A 92 -1 O ILE A 85 N LEU A 73 SHEET 4 B 8 VAL A 37 ASN A 39 1 N LEU A 38 O LEU A 92 SHEET 5 B 8 ASN A 100 LEU A 102 -1 O LEU A 101 N VAL A 37 SHEET 6 B 8 TYR A 23 LEU A 29 1 N LEU A 28 O LEU A 102 SHEET 7 B 8 GLU A 15 VAL A 20 -1 N ILE A 16 O PHE A 27 SHEET 8 B 8 GLY A 61 ILE A 75 -1 O GLU A 74 N PHE A 19 SHEET 1 C 8 ILE B 49 ILE B 57 0 SHEET 2 C 8 GLY B 62 ILE B 75 -1 O LYS B 63 N MET B 56 SHEET 3 C 8 GLN B 83 LEU B 92 -1 O VAL B 91 N THR B 66 SHEET 4 C 8 VAL B 37 ASN B 39 1 N LEU B 38 O LEU B 92 SHEET 5 C 8 ASN B 100 LEU B 102 -1 O LEU B 101 N VAL B 37 SHEET 6 C 8 TYR B 23 LEU B 29 1 N LEU B 28 O ASN B 100 SHEET 7 C 8 GLU B 15 VAL B 20 -1 N VAL B 20 O TYR B 23 SHEET 8 C 8 GLY B 62 ILE B 75 -1 O GLU B 74 N PHE B 19 SITE 1 AC1 18 ASP A 30 GLY A 32 ALA A 33 ASP A 34 SITE 2 AC1 18 ILE A 35 ILE A 57 GLY A 58 ILE A 59 SITE 3 AC1 18 HOH A 204 ASP B 30 GLY B 32 ALA B 33 SITE 4 AC1 18 ILE B 35 GLY B 58 ILE B 59 LEU B 101 SITE 5 AC1 18 HOH B 203 HOH B 434 SITE 1 AC2 5 GLY A 22 TYR A 23 VAL A 45 ILE A 49 SITE 2 AC2 5 GLU A 50 SITE 1 AC3 21 LEU A 28 ASP A 30 GLY A 32 ALA A 33 SITE 2 AC3 21 ILE A 35 MET A 56 GLY A 58 ILE A 59 SITE 3 AC3 21 LEU A 101 ASP B 30 GLY B 32 ALA B 33 SITE 4 AC3 21 ASP B 34 ILE B 35 MET B 56 ILE B 57 SITE 5 AC3 21 GLY B 58 ILE B 59 LEU B 101 HOH B 203 SITE 6 AC3 21 HOH B 434 CRYST1 81.170 81.170 33.590 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012320 0.007113 0.000000 0.00000 SCALE2 0.000000 0.014226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029771 0.00000