HEADER STRUCTURAL PROTEIN 07-OCT-09 3K5R TITLE CRYSTAL STRUCTURE OF MOUSE T-CADHERIN EC1 EC2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN 13; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAIN EC1 AND EC2 (UNP RESIDUES 140 TO 355); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CADHERIN, MOUSE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.SHAPIRO,C.CIATTO REVDAT 4 21-FEB-24 3K5R 1 SEQADV REVDAT 3 13-JUL-11 3K5R 1 VERSN REVDAT 2 16-MAR-10 3K5R 1 JRNL REVDAT 1 02-MAR-10 3K5R 0 JRNL AUTH C.CIATTO,F.BAHNA,N.ZAMPIERI,H.C.VANSTEENHOUSE,P.S.KATSAMBA, JRNL AUTH 2 G.AHLSEN,O.J.HARRISON,J.BRASCH,X.JIN,S.POSY,J.VENDOME, JRNL AUTH 3 B.RANSCHT,T.M.JESSELL,B.HONIG,L.SHAPIRO JRNL TITL T-CADHERIN STRUCTURES REVEAL A NOVEL ADHESIVE BINDING JRNL TITL 2 MECHANISM JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 339 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20190755 JRNL DOI 10.1038/NSMB.1781 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2329 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3356 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.359 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3416 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4660 ; 2.064 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 8.538 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.917 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;16.170 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.123 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 544 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2626 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1539 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2361 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 210 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.280 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.369 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2246 ; 1.210 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3584 ; 1.852 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1292 ; 3.059 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1076 ; 4.819 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 70.3343 20.7466 53.3825 REMARK 3 T TENSOR REMARK 3 T11: -0.0714 T22: 0.0214 REMARK 3 T33: -0.1165 T12: -0.0280 REMARK 3 T13: -0.0795 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 5.1514 L22: 4.4310 REMARK 3 L33: 2.7555 L12: 1.2230 REMARK 3 L13: -0.1870 L23: -0.2425 REMARK 3 S TENSOR REMARK 3 S11: 0.3113 S12: -0.7411 S13: -0.1018 REMARK 3 S21: 0.3447 S22: -0.1657 S23: -0.0711 REMARK 3 S31: 0.1459 S32: 0.0047 S33: -0.1455 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 66.1472 15.0964 29.5125 REMARK 3 T TENSOR REMARK 3 T11: -0.1380 T22: -0.1665 REMARK 3 T33: -0.1608 T12: 0.0481 REMARK 3 T13: -0.0392 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 4.5086 L22: 4.0413 REMARK 3 L33: 1.9872 L12: 3.4158 REMARK 3 L13: 0.4613 L23: 0.1995 REMARK 3 S TENSOR REMARK 3 S11: 0.1709 S12: -0.2397 S13: -0.0562 REMARK 3 S21: 0.2738 S22: -0.2297 S23: -0.1646 REMARK 3 S31: 0.0610 S32: -0.0043 S33: 0.0587 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 98 REMARK 3 ORIGIN FOR THE GROUP (A): -36.3752 86.1043 90.2360 REMARK 3 T TENSOR REMARK 3 T11: -0.1009 T22: -0.0429 REMARK 3 T33: -0.1268 T12: 0.0516 REMARK 3 T13: -0.0150 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 2.4535 L22: 5.1738 REMARK 3 L33: 2.7170 L12: 1.4843 REMARK 3 L13: -0.4472 L23: -0.5833 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.2655 S13: -0.0435 REMARK 3 S21: 0.1563 S22: 0.0080 S23: -0.2108 REMARK 3 S31: 0.0579 S32: 0.1819 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 103 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): -39.7391 79.1999 66.5414 REMARK 3 T TENSOR REMARK 3 T11: -0.1304 T22: -0.1389 REMARK 3 T33: -0.1675 T12: 0.0451 REMARK 3 T13: -0.0154 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.5121 L22: 4.3959 REMARK 3 L33: 2.4732 L12: 2.9371 REMARK 3 L13: 0.4669 L23: -0.1401 REMARK 3 S TENSOR REMARK 3 S11: 0.1559 S12: -0.2358 S13: -0.0037 REMARK 3 S21: 0.3164 S22: -0.2200 S23: -0.0538 REMARK 3 S31: 0.0702 S32: 0.1103 S33: 0.0641 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.67000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% SATURATED AMMONIUM SULFATE, 33MM REMARK 280 NA CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 53.85800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.09493 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 75.56600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 53.85800 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.09493 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 75.56600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 53.85800 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.09493 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.56600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 53.85800 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.09493 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.56600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 53.85800 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.09493 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.56600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 53.85800 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.09493 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.56600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.18986 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 151.13200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 62.18986 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 151.13200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 62.18986 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 151.13200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 62.18986 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 151.13200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 62.18986 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 151.13200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 62.18986 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 151.13200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 265 O HOH A 265 10545 1.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 47 CG LYS A 47 CD 0.217 REMARK 500 LYS A 47 CD LYS A 47 CE 0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 29 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 29 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 PRO B 46 C - N - CA ANGL. DEV. = 31.6 DEGREES REMARK 500 PRO B 46 C - N - CD ANGL. DEV. = -30.3 DEGREES REMARK 500 LEU B 184 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 88.54 -155.97 REMARK 500 VAL A 42 -87.63 -118.88 REMARK 500 ASP A 81 175.65 -51.52 REMARK 500 LEU A 87 -61.70 -105.46 REMARK 500 PHE A 132 -167.93 61.00 REMARK 500 ASP A 133 -76.99 -78.13 REMARK 500 ALA A 134 116.36 83.27 REMARK 500 ASP A 135 -10.98 93.86 REMARK 500 PRO A 137 114.72 -38.87 REMARK 500 ASP B 26 98.49 -160.27 REMARK 500 ARG B 29 132.73 -30.92 REMARK 500 VAL B 42 -83.83 -120.14 REMARK 500 ASP B 45 140.46 -39.62 REMARK 500 PRO B 46 62.22 26.73 REMARK 500 GLU B 109 -168.44 -102.33 REMARK 500 PRO B 111 139.22 -36.44 REMARK 500 PHE B 132 -170.40 64.35 REMARK 500 ASP B 133 -70.01 -62.65 REMARK 500 ALA B 134 124.80 89.44 REMARK 500 PRO B 137 117.20 -33.13 REMARK 500 ASP B 154 34.86 -98.70 REMARK 500 ARG B 181 -38.95 -130.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 137 ALA A 138 -144.85 REMARK 500 ASP B 45 PRO B 46 -99.97 REMARK 500 GLY B 110 PRO B 111 32.67 REMARK 500 PRO B 137 ALA B 138 -138.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K5S RELATED DB: PDB DBREF 3K5R A 2 217 UNP Q8VDK4 Q8VDK4_MOUSE 140 355 DBREF 3K5R B 2 217 UNP Q8VDK4 Q8VDK4_MOUSE 140 355 SEQADV 3K5R SER A 0 UNP Q8VDK4 EXPRESSION TAG SEQADV 3K5R GLY A 1 UNP Q8VDK4 EXPRESSION TAG SEQADV 3K5R SER B 0 UNP Q8VDK4 EXPRESSION TAG SEQADV 3K5R GLY B 1 UNP Q8VDK4 EXPRESSION TAG SEQRES 1 A 218 SER GLY ILE VAL VAL SER PRO ILE LEU ILE PRO GLU ASN SEQRES 2 A 218 GLN ARG GLN PRO PHE PRO ARG ASP VAL GLY LYS VAL VAL SEQRES 3 A 218 ASP SER ASP ARG PRO GLU GLY SER LYS PHE ARG LEU THR SEQRES 4 A 218 GLY LYS GLY VAL ASP GLN ASP PRO LYS GLY THR PHE ARG SEQRES 5 A 218 ILE ASN GLU ASN THR GLY SER VAL SER VAL THR ARG THR SEQRES 6 A 218 LEU ASP ARG GLU THR ILE ALA THR TYR GLN LEU TYR VAL SEQRES 7 A 218 GLU THR THR ASP ALA SER GLY LYS THR LEU GLU GLY PRO SEQRES 8 A 218 VAL PRO LEU GLU VAL ILE VAL ILE ASP GLN ASN ASP ASN SEQRES 9 A 218 ARG PRO ILE PHE ARG GLU GLY PRO TYR ILE GLY HIS VAL SEQRES 10 A 218 MET GLU GLY SER PRO THR GLY THR THR VAL MET ARG MET SEQRES 11 A 218 THR ALA PHE ASP ALA ASP ASP PRO ALA THR ASP ASN ALA SEQRES 12 A 218 LEU LEU ARG TYR ASN ILE ARG GLN GLN THR PRO ASP LYS SEQRES 13 A 218 PRO SER PRO ASN MET PHE TYR ILE ASP PRO GLU LYS GLY SEQRES 14 A 218 ASP ILE VAL THR VAL VAL SER PRO ALA LEU LEU ASP ARG SEQRES 15 A 218 GLU THR LEU GLU ASN PRO LYS TYR GLU LEU ILE ILE GLU SEQRES 16 A 218 ALA GLN ASP MET ALA GLY LEU ASP VAL GLY LEU THR GLY SEQRES 17 A 218 THR ALA THR ALA THR ILE VAL ILE ASP ASP SEQRES 1 B 218 SER GLY ILE VAL VAL SER PRO ILE LEU ILE PRO GLU ASN SEQRES 2 B 218 GLN ARG GLN PRO PHE PRO ARG ASP VAL GLY LYS VAL VAL SEQRES 3 B 218 ASP SER ASP ARG PRO GLU GLY SER LYS PHE ARG LEU THR SEQRES 4 B 218 GLY LYS GLY VAL ASP GLN ASP PRO LYS GLY THR PHE ARG SEQRES 5 B 218 ILE ASN GLU ASN THR GLY SER VAL SER VAL THR ARG THR SEQRES 6 B 218 LEU ASP ARG GLU THR ILE ALA THR TYR GLN LEU TYR VAL SEQRES 7 B 218 GLU THR THR ASP ALA SER GLY LYS THR LEU GLU GLY PRO SEQRES 8 B 218 VAL PRO LEU GLU VAL ILE VAL ILE ASP GLN ASN ASP ASN SEQRES 9 B 218 ARG PRO ILE PHE ARG GLU GLY PRO TYR ILE GLY HIS VAL SEQRES 10 B 218 MET GLU GLY SER PRO THR GLY THR THR VAL MET ARG MET SEQRES 11 B 218 THR ALA PHE ASP ALA ASP ASP PRO ALA THR ASP ASN ALA SEQRES 12 B 218 LEU LEU ARG TYR ASN ILE ARG GLN GLN THR PRO ASP LYS SEQRES 13 B 218 PRO SER PRO ASN MET PHE TYR ILE ASP PRO GLU LYS GLY SEQRES 14 B 218 ASP ILE VAL THR VAL VAL SER PRO ALA LEU LEU ASP ARG SEQRES 15 B 218 GLU THR LEU GLU ASN PRO LYS TYR GLU LEU ILE ILE GLU SEQRES 16 B 218 ALA GLN ASP MET ALA GLY LEU ASP VAL GLY LEU THR GLY SEQRES 17 B 218 THR ALA THR ALA THR ILE VAL ILE ASP ASP FORMUL 3 HOH *194(H2 O) HELIX 1 1 ALA A 138 ALA A 142 5 5 HELIX 2 2 SER A 175 LEU A 179 5 5 HELIX 3 3 ASP A 180 LEU A 184 5 5 HELIX 4 4 ALA B 138 ALA B 142 5 5 HELIX 5 5 SER B 175 LEU B 179 5 5 SHEET 1 A 4 ILE A 7 PRO A 10 0 SHEET 2 A 4 THR A 86 ILE A 98 1 O ILE A 96 N ILE A 7 SHEET 3 A 4 THR A 72 THR A 80 -1 N THR A 79 O LEU A 87 SHEET 4 A 4 LYS A 34 GLY A 39 -1 N ARG A 36 O GLU A 78 SHEET 1 B 3 ARG A 19 LYS A 23 0 SHEET 2 B 3 SER A 58 VAL A 61 -1 O VAL A 59 N VAL A 21 SHEET 3 B 3 PHE A 50 ILE A 52 -1 N ARG A 51 O SER A 60 SHEET 1 C 4 TYR A 112 MET A 117 0 SHEET 2 C 4 THR A 206 ASP A 216 1 O THR A 212 N GLY A 114 SHEET 3 C 4 LYS A 188 ASP A 197 -1 N LEU A 191 O ALA A 211 SHEET 4 C 4 LEU A 144 THR A 152 -1 N ASN A 147 O GLU A 194 SHEET 1 D 3 THR A 125 ARG A 128 0 SHEET 2 D 3 ASP A 169 THR A 172 -1 O ILE A 170 N VAL A 126 SHEET 3 D 3 PHE A 161 ILE A 163 -1 N TYR A 162 O VAL A 171 SHEET 1 E 4 ILE B 7 PRO B 10 0 SHEET 2 E 4 THR B 86 ILE B 98 1 O ILE B 96 N ILE B 7 SHEET 3 E 4 THR B 72 THR B 80 -1 N THR B 79 O LEU B 87 SHEET 4 E 4 LYS B 34 GLY B 39 -1 N ARG B 36 O GLU B 78 SHEET 1 F 3 ARG B 19 LYS B 23 0 SHEET 2 F 3 SER B 58 VAL B 61 -1 O VAL B 59 N VAL B 21 SHEET 3 F 3 PHE B 50 ILE B 52 -1 N ARG B 51 O SER B 60 SHEET 1 G 4 TYR B 112 MET B 117 0 SHEET 2 G 4 THR B 206 ASP B 216 1 O THR B 212 N GLY B 114 SHEET 3 G 4 LYS B 188 ASP B 197 -1 N LEU B 191 O ALA B 211 SHEET 4 G 4 LEU B 144 THR B 152 -1 N THR B 152 O GLU B 190 SHEET 1 H 3 THR B 125 ARG B 128 0 SHEET 2 H 3 ASP B 169 THR B 172 -1 O ILE B 170 N VAL B 126 SHEET 3 H 3 PHE B 161 ILE B 163 -1 N TYR B 162 O VAL B 171 CISPEP 1 GLN A 15 PRO A 16 0 -4.33 CISPEP 2 PHE A 17 PRO A 18 0 0.68 CISPEP 3 ASP A 45 PRO A 46 0 4.99 CISPEP 4 GLY A 110 PRO A 111 0 0.89 CISPEP 5 THR A 152 PRO A 153 0 1.57 CISPEP 6 LYS A 155 PRO A 156 0 3.69 CISPEP 7 GLN B 15 PRO B 16 0 4.67 CISPEP 8 PHE B 17 PRO B 18 0 4.58 CISPEP 9 THR B 152 PRO B 153 0 -1.82 CISPEP 10 LYS B 155 PRO B 156 0 0.67 CRYST1 107.716 107.716 226.698 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009284 0.005360 0.000000 0.00000 SCALE2 0.000000 0.010720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004411 0.00000