HEADER DNA BINDING PROTEIN 02-JAN-08 3BUA TITLE CRYSTAL STRUCTURE OF TRF2 TRFH DOMAIN AND APOLLO PEPTIDE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERIC REPEAT-BINDING FACTOR 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: TRFH DOMAIN, DIMERIZATION DOMAIN; COMPND 5 SYNONYM: TTAGGG REPEAT-BINDING FACTOR 2, TELOMERIC DNA- COMPND 6 BINDING PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA CROSS-LINK REPAIR 1B PROTEIN; COMPND 10 CHAIN: E, F, G, H; COMPND 11 FRAGMENT: UNP RESIDUES 495-530; COMPND 12 SYNONYM: HSNM1B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TERF2, TRBF2, TRF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 28B-SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: DCLRE1B, SNM1B; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET 28B-SUMO KEYWDS TRF2 TRFH DOMAIN DIMERIZATION DOMAIN APOLLO PEPTIDE, KEYWDS 2 ALTERNATIVE SPLICING, CELL CYCLE, CHROMOSOMAL PROTEIN, DNA- KEYWDS 3 BINDING, NUCLEUS, PHOSPHOPROTEIN, TELOMERE, DNA DAMAGE, DNA KEYWDS 4 REPAIR, POLYMORPHISM, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,Y.YANG,M.VAN OVERBEEK,J.R.DONIGIAN,P.BACIU,T.DE AUTHOR 2 LANGE,M.LEI REVDAT 3 24-FEB-09 3BUA 1 VERSN REVDAT 2 04-MAR-08 3BUA 1 JRNL REVDAT 1 19-FEB-08 3BUA 0 JRNL AUTH Y.CHEN,Y.YANG,M.VAN OVERBEEK,J.R.DONIGIAN,P.BACIU, JRNL AUTH 2 T.DE LANGE,M.LEI JRNL TITL A SHARED DOCKING MOTIF IN TRF1 AND TRF2 USED FOR JRNL TITL 2 DIFFERENTIAL RECRUITMENT OF TELOMERIC PROTEINS. JRNL REF SCIENCE V. 319 1092 2008 JRNL REFN ISSN 0036-8075 JRNL PMID 18202258 JRNL DOI 10.1126/SCIENCE.1151804 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 30645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3069 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.63 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.25 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.99 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3BUA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB045963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97869 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31885 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.800 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H6P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (NH4)2SO4 2.6 M DTT 1 MM MES 0.05 REMARK 280 M PH 5.6 MGAC2 10 MM, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.22000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.61000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.61000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 42 REMARK 465 ALA A 43 REMARK 465 GLY B 42 REMARK 465 ALA B 43 REMARK 465 GLY C 42 REMARK 465 ALA C 43 REMARK 465 GLY D 42 REMARK 465 ALA D 43 REMARK 465 SER E 495 REMARK 465 GLU E 496 REMARK 465 PHE E 511 REMARK 465 PHE E 512 REMARK 465 GLN E 513 REMARK 465 ALA E 514 REMARK 465 GLY E 515 REMARK 465 TYR E 516 REMARK 465 SER E 517 REMARK 465 SER E 518 REMARK 465 ARG E 519 REMARK 465 ARG E 520 REMARK 465 PHE E 521 REMARK 465 ASP E 522 REMARK 465 GLN E 523 REMARK 465 GLN E 524 REMARK 465 VAL E 525 REMARK 465 GLU E 526 REMARK 465 LYS E 527 REMARK 465 TYR E 528 REMARK 465 HIS E 529 REMARK 465 LYS E 530 REMARK 465 SER F 495 REMARK 465 GLU F 496 REMARK 465 PHE F 497 REMARK 465 ASN F 510 REMARK 465 PHE F 511 REMARK 465 PHE F 512 REMARK 465 GLN F 513 REMARK 465 ALA F 514 REMARK 465 GLY F 515 REMARK 465 TYR F 516 REMARK 465 SER F 517 REMARK 465 SER F 518 REMARK 465 ARG F 519 REMARK 465 ARG F 520 REMARK 465 PHE F 521 REMARK 465 ASP F 522 REMARK 465 GLN F 523 REMARK 465 GLN F 524 REMARK 465 VAL F 525 REMARK 465 GLU F 526 REMARK 465 LYS F 527 REMARK 465 TYR F 528 REMARK 465 HIS F 529 REMARK 465 LYS F 530 REMARK 465 PHE G 511 REMARK 465 PHE G 512 REMARK 465 GLN G 513 REMARK 465 ALA G 514 REMARK 465 GLY G 515 REMARK 465 TYR G 516 REMARK 465 SER G 517 REMARK 465 SER G 518 REMARK 465 ARG G 519 REMARK 465 ARG G 520 REMARK 465 PHE G 521 REMARK 465 ASP G 522 REMARK 465 GLN G 523 REMARK 465 GLN G 524 REMARK 465 VAL G 525 REMARK 465 GLU G 526 REMARK 465 LYS G 527 REMARK 465 TYR G 528 REMARK 465 HIS G 529 REMARK 465 LYS G 530 REMARK 465 SER H 495 REMARK 465 GLU H 496 REMARK 465 PHE H 497 REMARK 465 ARG H 498 REMARK 465 PHE H 511 REMARK 465 PHE H 512 REMARK 465 GLN H 513 REMARK 465 ALA H 514 REMARK 465 GLY H 515 REMARK 465 TYR H 516 REMARK 465 SER H 517 REMARK 465 SER H 518 REMARK 465 ARG H 519 REMARK 465 ARG H 520 REMARK 465 PHE H 521 REMARK 465 ASP H 522 REMARK 465 GLN H 523 REMARK 465 GLN H 524 REMARK 465 VAL H 525 REMARK 465 GLU H 526 REMARK 465 LYS H 527 REMARK 465 TYR H 528 REMARK 465 HIS H 529 REMARK 465 LYS H 530 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP C 230 N ALA C 232 2.02 REMARK 500 O LYS C 184 N PRO C 186 2.09 REMARK 500 N VAL D 97 O HOH D 570 2.12 REMARK 500 CB PRO G 508 OD1 ASN G 510 2.18 REMARK 500 O GLY F 499 N LEU F 502 2.18 REMARK 500 O MET B 182 N LYS B 184 2.19 REMARK 500 O LYS D 179 OG SER D 183 2.19 REMARK 500 O PRO C 186 N THR C 188 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 100 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ASP A 185 N - CA - C ANGL. DEV. = 20.5 DEGREES REMARK 500 LEU A 244 CA - CB - CG ANGL. DEV. = 30.6 DEGREES REMARK 500 ASP B 185 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 PRO B 186 C - N - CA ANGL. DEV. = -12.1 DEGREES REMARK 500 GLU D 233 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 VAL G 509 CB - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 72 73.19 -104.14 REMARK 500 HIS A 95 -10.75 -48.22 REMARK 500 GLU A 170 72.42 -101.29 REMARK 500 LYS A 184 -128.44 -79.94 REMARK 500 ASP A 185 -25.16 -153.08 REMARK 500 PRO A 186 -147.32 -50.60 REMARK 500 THR A 187 -39.93 -28.95 REMARK 500 THR A 188 -1.11 -48.23 REMARK 500 ARG B 72 75.47 -105.18 REMARK 500 VAL B 97 -13.14 -145.99 REMARK 500 THR B 144 72.09 41.20 REMARK 500 SER B 183 0.11 -28.46 REMARK 500 LYS B 184 -157.55 -70.30 REMARK 500 ASP B 185 28.34 -143.94 REMARK 500 PRO B 186 -97.43 -54.66 REMARK 500 GLN B 189 -38.00 -15.85 REMARK 500 ALA B 232 122.03 -34.60 REMARK 500 GLU C 45 -5.76 -50.81 REMARK 500 ALA C 46 -71.97 -67.39 REMARK 500 ARG C 72 64.64 -100.31 REMARK 500 GLU C 94 -63.20 -23.54 REMARK 500 HIS C 95 -53.53 -29.05 REMARK 500 VAL C 97 -5.05 -147.59 REMARK 500 GLU C 170 70.58 -101.93 REMARK 500 SER C 183 -55.69 -131.07 REMARK 500 LYS C 184 -90.31 -77.94 REMARK 500 ASP C 185 52.99 10.92 REMARK 500 PRO C 186 -96.23 -34.01 REMARK 500 THR C 187 8.14 -44.30 REMARK 500 HIS C 228 35.36 -98.35 REMARK 500 LEU C 229 -163.48 -125.32 REMARK 500 ASP C 231 52.58 -42.05 REMARK 500 LYS C 242 -2.90 -54.29 REMARK 500 SER D 183 43.70 -64.01 REMARK 500 LYS D 184 -75.31 -140.63 REMARK 500 ASP D 185 -167.69 -50.19 REMARK 500 PRO D 186 -79.26 -90.05 REMARK 500 THR D 187 14.52 -60.44 REMARK 500 ASN D 203 66.30 -69.68 REMARK 500 SER D 227 1.74 -68.03 REMARK 500 ASP D 230 -164.54 -62.72 REMARK 500 ALA D 232 -166.36 -178.26 REMARK 500 LYS D 242 -6.23 -59.72 REMARK 500 LEU D 244 43.37 -74.93 REMARK 500 LEU E 505 110.90 -36.99 REMARK 500 LEU F 505 121.40 -36.08 REMARK 500 GLU G 496 -155.51 -95.30 REMARK 500 PHE G 497 99.41 -47.56 REMARK 500 VAL G 509 -72.78 -96.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BU8 RELATED DB: PDB REMARK 900 RELATED ID: 3BQO RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE SER 495 IN CHAIN E,F,G,H CAME FROM A PROTEASE REMARK 999 SPECIFIC DIGESTION. IT IS A RESIDUAL RESIDUE AFTER DIGESTION. DBREF 3BUA A 42 245 UNP Q15554 TERF2_HUMAN 42 245 DBREF 3BUA B 42 245 UNP Q15554 TERF2_HUMAN 42 245 DBREF 3BUA C 42 245 UNP Q15554 TERF2_HUMAN 42 245 DBREF 3BUA D 42 245 UNP Q15554 TERF2_HUMAN 42 245 DBREF 3BUA E 495 530 UNP Q9H816 DCR1B_HUMAN 495 530 DBREF 3BUA F 495 530 UNP Q9H816 DCR1B_HUMAN 495 530 DBREF 3BUA G 495 530 UNP Q9H816 DCR1B_HUMAN 495 530 DBREF 3BUA H 495 530 UNP Q9H816 DCR1B_HUMAN 495 530 SEQADV 3BUA SER E 495 UNP Q9H816 THR 495 SEE REMARK 999 SEQADV 3BUA SER F 495 UNP Q9H816 THR 495 SEE REMARK 999 SEQADV 3BUA SER G 495 UNP Q9H816 THR 495 SEE REMARK 999 SEQADV 3BUA SER H 495 UNP Q9H816 THR 495 SEE REMARK 999 SEQRES 1 A 204 GLY ALA GLY GLU ALA ARG LEU GLU GLU ALA VAL ASN ARG SEQRES 2 A 204 TRP VAL LEU LYS PHE TYR PHE HIS GLU ALA LEU ARG ALA SEQRES 3 A 204 PHE ARG GLY SER ARG TYR GLY ASP PHE ARG GLN ILE ARG SEQRES 4 A 204 ASP ILE MET GLN ALA LEU LEU VAL ARG PRO LEU GLY LYS SEQRES 5 A 204 GLU HIS THR VAL SER ARG LEU LEU ARG VAL MET GLN CYS SEQRES 6 A 204 LEU SER ARG ILE GLU GLU GLY GLU ASN LEU ASP CYS SER SEQRES 7 A 204 PHE ASP MET GLU ALA GLU LEU THR PRO LEU GLU SER ALA SEQRES 8 A 204 ILE ASN VAL LEU GLU MET ILE LYS THR GLU PHE THR LEU SEQRES 9 A 204 THR GLU ALA VAL VAL GLU SER SER ARG LYS LEU VAL LYS SEQRES 10 A 204 GLU ALA ALA VAL ILE ILE CYS ILE LYS ASN LYS GLU PHE SEQRES 11 A 204 GLU LYS ALA SER LYS ILE LEU LYS LYS HIS MET SER LYS SEQRES 12 A 204 ASP PRO THR THR GLN LYS LEU ARG ASN ASP LEU LEU ASN SEQRES 13 A 204 ILE ILE ARG GLU LYS ASN LEU ALA HIS PRO VAL ILE GLN SEQRES 14 A 204 ASN PHE SER TYR GLU THR PHE GLN GLN LYS MET LEU ARG SEQRES 15 A 204 PHE LEU GLU SER HIS LEU ASP ASP ALA GLU PRO TYR LEU SEQRES 16 A 204 LEU THR MET ALA LYS LYS ALA LEU LYS SEQRES 1 B 204 GLY ALA GLY GLU ALA ARG LEU GLU GLU ALA VAL ASN ARG SEQRES 2 B 204 TRP VAL LEU LYS PHE TYR PHE HIS GLU ALA LEU ARG ALA SEQRES 3 B 204 PHE ARG GLY SER ARG TYR GLY ASP PHE ARG GLN ILE ARG SEQRES 4 B 204 ASP ILE MET GLN ALA LEU LEU VAL ARG PRO LEU GLY LYS SEQRES 5 B 204 GLU HIS THR VAL SER ARG LEU LEU ARG VAL MET GLN CYS SEQRES 6 B 204 LEU SER ARG ILE GLU GLU GLY GLU ASN LEU ASP CYS SER SEQRES 7 B 204 PHE ASP MET GLU ALA GLU LEU THR PRO LEU GLU SER ALA SEQRES 8 B 204 ILE ASN VAL LEU GLU MET ILE LYS THR GLU PHE THR LEU SEQRES 9 B 204 THR GLU ALA VAL VAL GLU SER SER ARG LYS LEU VAL LYS SEQRES 10 B 204 GLU ALA ALA VAL ILE ILE CYS ILE LYS ASN LYS GLU PHE SEQRES 11 B 204 GLU LYS ALA SER LYS ILE LEU LYS LYS HIS MET SER LYS SEQRES 12 B 204 ASP PRO THR THR GLN LYS LEU ARG ASN ASP LEU LEU ASN SEQRES 13 B 204 ILE ILE ARG GLU LYS ASN LEU ALA HIS PRO VAL ILE GLN SEQRES 14 B 204 ASN PHE SER TYR GLU THR PHE GLN GLN LYS MET LEU ARG SEQRES 15 B 204 PHE LEU GLU SER HIS LEU ASP ASP ALA GLU PRO TYR LEU SEQRES 16 B 204 LEU THR MET ALA LYS LYS ALA LEU LYS SEQRES 1 C 204 GLY ALA GLY GLU ALA ARG LEU GLU GLU ALA VAL ASN ARG SEQRES 2 C 204 TRP VAL LEU LYS PHE TYR PHE HIS GLU ALA LEU ARG ALA SEQRES 3 C 204 PHE ARG GLY SER ARG TYR GLY ASP PHE ARG GLN ILE ARG SEQRES 4 C 204 ASP ILE MET GLN ALA LEU LEU VAL ARG PRO LEU GLY LYS SEQRES 5 C 204 GLU HIS THR VAL SER ARG LEU LEU ARG VAL MET GLN CYS SEQRES 6 C 204 LEU SER ARG ILE GLU GLU GLY GLU ASN LEU ASP CYS SER SEQRES 7 C 204 PHE ASP MET GLU ALA GLU LEU THR PRO LEU GLU SER ALA SEQRES 8 C 204 ILE ASN VAL LEU GLU MET ILE LYS THR GLU PHE THR LEU SEQRES 9 C 204 THR GLU ALA VAL VAL GLU SER SER ARG LYS LEU VAL LYS SEQRES 10 C 204 GLU ALA ALA VAL ILE ILE CYS ILE LYS ASN LYS GLU PHE SEQRES 11 C 204 GLU LYS ALA SER LYS ILE LEU LYS LYS HIS MET SER LYS SEQRES 12 C 204 ASP PRO THR THR GLN LYS LEU ARG ASN ASP LEU LEU ASN SEQRES 13 C 204 ILE ILE ARG GLU LYS ASN LEU ALA HIS PRO VAL ILE GLN SEQRES 14 C 204 ASN PHE SER TYR GLU THR PHE GLN GLN LYS MET LEU ARG SEQRES 15 C 204 PHE LEU GLU SER HIS LEU ASP ASP ALA GLU PRO TYR LEU SEQRES 16 C 204 LEU THR MET ALA LYS LYS ALA LEU LYS SEQRES 1 D 204 GLY ALA GLY GLU ALA ARG LEU GLU GLU ALA VAL ASN ARG SEQRES 2 D 204 TRP VAL LEU LYS PHE TYR PHE HIS GLU ALA LEU ARG ALA SEQRES 3 D 204 PHE ARG GLY SER ARG TYR GLY ASP PHE ARG GLN ILE ARG SEQRES 4 D 204 ASP ILE MET GLN ALA LEU LEU VAL ARG PRO LEU GLY LYS SEQRES 5 D 204 GLU HIS THR VAL SER ARG LEU LEU ARG VAL MET GLN CYS SEQRES 6 D 204 LEU SER ARG ILE GLU GLU GLY GLU ASN LEU ASP CYS SER SEQRES 7 D 204 PHE ASP MET GLU ALA GLU LEU THR PRO LEU GLU SER ALA SEQRES 8 D 204 ILE ASN VAL LEU GLU MET ILE LYS THR GLU PHE THR LEU SEQRES 9 D 204 THR GLU ALA VAL VAL GLU SER SER ARG LYS LEU VAL LYS SEQRES 10 D 204 GLU ALA ALA VAL ILE ILE CYS ILE LYS ASN LYS GLU PHE SEQRES 11 D 204 GLU LYS ALA SER LYS ILE LEU LYS LYS HIS MET SER LYS SEQRES 12 D 204 ASP PRO THR THR GLN LYS LEU ARG ASN ASP LEU LEU ASN SEQRES 13 D 204 ILE ILE ARG GLU LYS ASN LEU ALA HIS PRO VAL ILE GLN SEQRES 14 D 204 ASN PHE SER TYR GLU THR PHE GLN GLN LYS MET LEU ARG SEQRES 15 D 204 PHE LEU GLU SER HIS LEU ASP ASP ALA GLU PRO TYR LEU SEQRES 16 D 204 LEU THR MET ALA LYS LYS ALA LEU LYS SEQRES 1 E 36 SER GLU PHE ARG GLY LEU ALA LEU LYS TYR LEU LEU THR SEQRES 2 E 36 PRO VAL ASN PHE PHE GLN ALA GLY TYR SER SER ARG ARG SEQRES 3 E 36 PHE ASP GLN GLN VAL GLU LYS TYR HIS LYS SEQRES 1 F 36 SER GLU PHE ARG GLY LEU ALA LEU LYS TYR LEU LEU THR SEQRES 2 F 36 PRO VAL ASN PHE PHE GLN ALA GLY TYR SER SER ARG ARG SEQRES 3 F 36 PHE ASP GLN GLN VAL GLU LYS TYR HIS LYS SEQRES 1 G 36 SER GLU PHE ARG GLY LEU ALA LEU LYS TYR LEU LEU THR SEQRES 2 G 36 PRO VAL ASN PHE PHE GLN ALA GLY TYR SER SER ARG ARG SEQRES 3 G 36 PHE ASP GLN GLN VAL GLU LYS TYR HIS LYS SEQRES 1 H 36 SER GLU PHE ARG GLY LEU ALA LEU LYS TYR LEU LEU THR SEQRES 2 H 36 PRO VAL ASN PHE PHE GLN ALA GLY TYR SER SER ARG ARG SEQRES 3 H 36 PHE ASP GLN GLN VAL GLU LYS TYR HIS LYS FORMUL 9 HOH *110(H2 O) HELIX 1 1 GLY A 44 GLY A 70 1 27 HELIX 2 2 ARG A 72 LEU A 87 1 16 HELIX 3 3 LYS A 93 THR A 96 5 4 HELIX 4 4 VAL A 97 GLU A 112 1 16 HELIX 5 5 THR A 127 PHE A 143 1 17 HELIX 6 6 THR A 146 ASN A 168 1 23 HELIX 7 7 GLU A 170 MET A 182 1 13 HELIX 8 8 THR A 187 GLU A 201 1 15 HELIX 9 9 HIS A 206 ASN A 211 1 6 HELIX 10 10 SER A 213 SER A 227 1 15 HELIX 11 11 PRO A 234 LEU A 244 1 11 HELIX 12 12 GLY B 44 GLY B 70 1 27 HELIX 13 13 ARG B 72 LEU B 87 1 16 HELIX 14 14 LYS B 93 THR B 96 5 4 HELIX 15 15 VAL B 97 GLU B 112 1 16 HELIX 16 16 THR B 127 THR B 144 1 18 HELIX 17 17 THR B 146 ASN B 168 1 23 HELIX 18 18 GLU B 170 MET B 182 1 13 HELIX 19 19 THR B 187 GLN B 189 5 3 HELIX 20 20 LYS B 190 GLU B 201 1 12 HELIX 21 21 HIS B 206 ASN B 211 1 6 HELIX 22 22 SER B 213 HIS B 228 1 16 HELIX 23 23 PRO B 234 LEU B 244 1 11 HELIX 24 24 GLY C 44 GLY C 70 1 27 HELIX 25 25 ARG C 72 LEU C 87 1 16 HELIX 26 26 GLU C 94 GLU C 112 1 19 HELIX 27 27 THR C 127 PHE C 143 1 17 HELIX 28 28 THR C 146 ASN C 168 1 23 HELIX 29 29 GLU C 170 MET C 182 1 13 HELIX 30 30 ASP C 185 THR C 187 5 3 HELIX 31 31 THR C 188 GLU C 201 1 14 HELIX 32 32 HIS C 206 ASN C 211 1 6 HELIX 33 33 SER C 213 HIS C 228 1 16 HELIX 34 34 PRO C 234 LYS C 245 1 12 HELIX 35 35 GLU D 45 GLY D 70 1 26 HELIX 36 36 ARG D 72 VAL D 88 1 17 HELIX 37 37 VAL D 97 GLU D 112 1 16 HELIX 38 38 THR D 127 PHE D 143 1 17 HELIX 39 39 THR D 146 LYS D 167 1 22 HELIX 40 40 GLU D 170 MET D 182 1 13 HELIX 41 41 THR D 188 LYS D 202 1 15 HELIX 42 42 HIS D 206 ASN D 211 1 6 HELIX 43 43 SER D 213 SER D 227 1 15 HELIX 44 44 PRO D 234 LYS D 242 1 9 HELIX 45 45 GLY E 499 TYR E 504 1 6 HELIX 46 46 GLY F 499 TYR F 504 1 6 HELIX 47 47 GLY H 499 TYR H 504 1 6 CRYST1 109.947 109.947 130.830 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009095 0.005251 0.000000 0.00000 SCALE2 0.000000 0.010502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007644 0.00000