HEADER TRANSFERASE 20-JUL-07 2QOR TITLE CRYSTAL STRUCTURE OF PLASMODIUM VIVAX GUANYLATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GMP KINASE, GUANOSINE MONOPHOSPHATE KINASE; COMPND 5 EC: 2.7.4.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: PV099895, PVX_099895; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS PHOSPHOTRANSFERASE, PURINE METABOLISM, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, SGPP, PSI, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MERRITT,I.LE TRONG,STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA AUTHOR 2 CONSORTIUM (SGPP) REVDAT 5 25-OCT-17 2QOR 1 REMARK REVDAT 4 13-JUL-11 2QOR 1 VERSN REVDAT 3 24-FEB-09 2QOR 1 VERSN REVDAT 2 14-AUG-07 2QOR 1 REMARK REVDAT 1 07-AUG-07 2QOR 0 JRNL AUTH I.LE TRONG,E.A.MERRITT JRNL TITL PLASMODIUM VIVAX GUANYLATE KINASE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 984 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1663 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1187 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2239 ; 1.422 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2878 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 195 ; 5.854 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;34.375 ;24.024 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;13.563 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;15.554 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 233 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1808 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 345 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 288 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1211 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 788 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 884 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 60 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1207 ; 1.335 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 399 ; 0.279 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1577 ; 1.652 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 801 ; 2.707 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 662 ; 3.865 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9203 0.0457 184.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.0448 T22: 0.1110 REMARK 3 T33: 0.0725 T12: 0.0077 REMARK 3 T13: 0.0197 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 1.3341 L22: 1.4313 REMARK 3 L33: 1.7606 L12: 0.3536 REMARK 3 L13: -0.5204 L23: -0.5517 REMARK 3 S TENSOR REMARK 3 S11: -0.0796 S12: -0.0963 S13: -0.1232 REMARK 3 S21: -0.0054 S22: 0.0109 S23: 0.0134 REMARK 3 S31: 0.1998 S32: 0.0052 S33: 0.0687 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4594 9.0172 192.9553 REMARK 3 T TENSOR REMARK 3 T11: 0.0435 T22: 0.1757 REMARK 3 T33: 0.0228 T12: 0.0009 REMARK 3 T13: -0.0203 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 2.5196 L22: 4.1045 REMARK 3 L33: 3.0998 L12: 1.0478 REMARK 3 L13: -1.1058 L23: -1.2485 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.4633 S13: -0.2059 REMARK 3 S21: 0.5763 S22: -0.1945 S23: -0.2430 REMARK 3 S31: -0.0119 S32: 0.4398 S33: 0.1685 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6408 11.9089 181.5688 REMARK 3 T TENSOR REMARK 3 T11: 0.0003 T22: 0.1330 REMARK 3 T33: 0.1120 T12: 0.0308 REMARK 3 T13: 0.0074 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 3.7308 L22: 2.8418 REMARK 3 L33: 1.8629 L12: 1.0111 REMARK 3 L13: -0.3438 L23: -0.5516 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0754 S13: -0.1831 REMARK 3 S21: -0.0506 S22: 0.1046 S23: 0.1135 REMARK 3 S31: 0.0616 S32: -0.1491 S33: -0.0829 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2272 17.6136 181.0170 REMARK 3 T TENSOR REMARK 3 T11: 0.0311 T22: 0.0969 REMARK 3 T33: 0.0815 T12: -0.0279 REMARK 3 T13: -0.0051 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.9717 L22: 1.5865 REMARK 3 L33: 1.7564 L12: -0.2135 REMARK 3 L13: 0.0487 L23: -0.1666 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.1632 S13: 0.1797 REMARK 3 S21: 0.1123 S22: -0.0551 S23: 0.0270 REMARK 3 S31: -0.0372 S32: 0.0366 S33: 0.0787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907, 0.97922, 0.91162 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE CCP4_5.99, DENZO, HKL REMARK 200 -2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19333 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 17.20 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 UL PROTEIN, 0.1 UL CRYSTALLIZATION REMARK 280 BUFFER (65% PEG 400, 0.1M MOPS PH 7.5, 0.1M NANO3, 5MM GMP), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 228.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.26667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.40000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.13333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 285.66667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 228.53333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 114.26667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.13333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 171.40000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 285.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION REMARK 300 ON BURIED SURFACE AREA. REMARK 300 AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN REMARK 300 IS NOT AVAILABLE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 264 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 51 -58.29 -129.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 198 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PVIV008894AAA RELATED DB: TARGETDB REMARK 900 SGPP TARGET CONSTRUCT REMARK 900 RELATED ID: 1GKY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SYNTHETIC GUANYLATE KINASE IN COMPLEX WITH ITS REMARK 900 SUBSTRATE GMP REMARK 900 RELATED ID: 1EX6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED FORM OF GUANYLATE KINASE FROM YEAST REMARK 900 RELATED ID: 1EX7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YEAST GUANYLATE KINASE IN COMPLEX WITH GMP REMARK 900 RELATED ID: 2ANC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED FORM OF OLIGOMERIC E.COLI GUANYLATE REMARK 900 KINASE REMARK 900 RELATED ID: 2ANB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OLIGOMERIC E.COLI GUANYLATE KINASE IN COMPLEX REMARK 900 WITH GMP REMARK 900 RELATED ID: 2AN9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OLIGOMERIC E.COLI GUANYLATE KINASE IN COMPLEX REMARK 900 WITH GDP REMARK 900 RELATED ID: 2F3R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI GUANYLATE KINASE IN COMPLEX WITH AP5G REMARK 900 RELATED ID: 1S96 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GUANYLATE KINASE FROM E.COLI REMARK 900 RELATED ID: 2F3T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI GUANYLATE KINASE IN COMPLEX WITH REMARK 900 GANCICLOVIR MONOPHOSPHATE AND AP5G REMARK 900 RELATED ID: 1ZNW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED FORM OF MYCOBACTERIUM TUBERCULOSIS REMARK 900 GUANYLATE KINASE REMARK 900 RELATED ID: 1ZNX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS GUANYLATE KINASE IN REMARK 900 COMPLEX WITH GMP REMARK 900 RELATED ID: 1ZNY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS GUANYLATE KINASE IN REMARK 900 COMPLEX WITH GDP REMARK 900 RELATED ID: 1S4Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GUANYLATE KINASE FROM MYCOBACTERIUM REMARK 900 TUBERCULOSIS REMARK 900 RELATED ID: 1ZNZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE REDUCED FORM OF MYCOBACTERIUM TUBERCULOSIS REMARK 900 GUANYLATE KINASE IN COMPLEX WITH GDP REMARK 900 RELATED ID: 1Z8F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GUANYLATE KINASE DOUBLE MUTANT A58C,T157C FROM REMARK 900 MYCOBACTERIUM TUBERCULOSIS REMARK 900 RELATED ID: 1Z6G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GUANYLATE KINASE FROM PLASMODIUM FALCIPARUM REMARK 900 RELATED ID: 1LVG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE GUANYLATE KINASE IN COMPLEX WITH GMP AND REMARK 900 ADP REMARK 900 RELATED ID: 2J41 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS GUANYLATE KINASE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN IS ALSO AVAILABLE REMARK 999 FROM PLASMODB UNDER THE ACCESION CODE PV099895. DBREF 2QOR A 1 196 UNP A5K709 A5K709_PLAVI 1 196 SEQADV 2QOR MSE A -7 UNP A5K709 CLONING ARTIFACT SEQADV 2QOR ALA A -6 UNP A5K709 CLONING ARTIFACT SEQADV 2QOR HIS A -5 UNP A5K709 CLONING ARTIFACT SEQADV 2QOR HIS A -4 UNP A5K709 CLONING ARTIFACT SEQADV 2QOR HIS A -3 UNP A5K709 CLONING ARTIFACT SEQADV 2QOR HIS A -2 UNP A5K709 CLONING ARTIFACT SEQADV 2QOR HIS A -1 UNP A5K709 CLONING ARTIFACT SEQADV 2QOR HIS A 0 UNP A5K709 CLONING ARTIFACT SEQRES 1 A 204 MSE ALA HIS HIS HIS HIS HIS HIS MSE ALA ARG ILE PRO SEQRES 2 A 204 PRO LEU VAL VAL CYS GLY PRO SER GLY VAL GLY LYS GLY SEQRES 3 A 204 THR LEU ILE LYS LYS VAL LEU SER GLU PHE PRO SER ARG SEQRES 4 A 204 PHE ARG PHE SER ILE SER CYS THR THR ARG ASN LYS ARG SEQRES 5 A 204 GLU LYS GLU THR ASN GLY VAL ASP TYR TYR PHE VAL ASP SEQRES 6 A 204 LYS ASP ASP PHE GLU ARG LYS LEU LYS GLU GLY GLN PHE SEQRES 7 A 204 LEU GLU PHE ASP LYS TYR ALA ASN ASN PHE TYR GLY THR SEQRES 8 A 204 LEU LYS SER GLU TYR ASP LEU ALA VAL GLY GLU GLY LYS SEQRES 9 A 204 ILE CYS LEU PHE GLU MSE ASN ILE ASN GLY VAL LYS GLN SEQRES 10 A 204 LEU LYS GLU SER LYS HIS ILE GLN ASP GLY ILE TYR ILE SEQRES 11 A 204 PHE VAL LYS PRO PRO SER ILE ASP ILE LEU LEU GLY ARG SEQRES 12 A 204 LEU LYS ASN ARG ASN THR GLU LYS PRO GLU GLU ILE ASN SEQRES 13 A 204 LYS ARG MSE GLN GLU LEU THR ARG GLU MSE ASP GLU ALA SEQRES 14 A 204 ASP LYS VAL GLY PHE ASN TYR PHE ILE VAL ASN ASP ASP SEQRES 15 A 204 LEU ALA ARG THR TYR ALA GLU LEU ARG GLU TYR LEU LEU SEQRES 16 A 204 GLY SER TYR PRO GLN LEU ARG GLY GLY MODRES 2QOR MSE A 1 MET SELENOMETHIONINE MODRES 2QOR MSE A 102 MET SELENOMETHIONINE MODRES 2QOR MSE A 151 MET SELENOMETHIONINE MODRES 2QOR MSE A 158 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 102 8 HET MSE A 151 8 HET MSE A 158 8 HET 5GP A 197 24 HET POP A 198 14 HETNAM MSE SELENOMETHIONINE HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE HETNAM POP PYROPHOSPHATE 2- FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 5GP C10 H14 N5 O8 P FORMUL 3 POP H2 O7 P2 2- FORMUL 4 HOH *64(H2 O) HELIX 1 1 GLY A 16 PHE A 28 1 13 HELIX 2 2 ASP A 57 GLU A 67 1 11 HELIX 3 3 LYS A 85 GLU A 94 1 10 HELIX 4 4 ASN A 103 SER A 113 1 11 HELIX 5 5 SER A 128 ASN A 138 1 11 HELIX 6 6 LYS A 143 GLY A 165 1 23 HELIX 7 7 ASP A 174 TYR A 190 1 17 SHEET 1 A 5 PHE A 32 PHE A 34 0 SHEET 2 A 5 ILE A 97 GLU A 101 1 O LEU A 99 N ARG A 33 SHEET 3 A 5 LEU A 7 CYS A 10 1 N LEU A 7 O PHE A 100 SHEET 4 A 5 ILE A 120 LYS A 125 1 O ILE A 120 N VAL A 8 SHEET 5 A 5 TYR A 168 VAL A 171 1 O ILE A 170 N LYS A 125 SHEET 1 B 4 TYR A 53 PHE A 55 0 SHEET 2 B 4 SER A 37 THR A 39 1 N SER A 37 O TYR A 54 SHEET 3 B 4 ASN A 79 LEU A 84 -1 O GLY A 82 N CYS A 38 SHEET 4 B 4 PHE A 70 TYR A 76 -1 N TYR A 76 O ASN A 79 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C GLU A 101 N MSE A 102 1555 1555 1.32 LINK C MSE A 102 N ASN A 103 1555 1555 1.32 LINK C ARG A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N GLN A 152 1555 1555 1.33 LINK C GLU A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N ASP A 159 1555 1555 1.33 SITE 1 AC1 18 SER A 37 ARG A 41 TYR A 53 GLU A 72 SITE 2 AC1 18 TYR A 76 TYR A 81 GLY A 82 THR A 83 SITE 3 AC1 18 GLU A 101 MSE A 102 ASN A 103 GLY A 106 SITE 4 AC1 18 ARG A 150 POP A 198 HOH A 201 HOH A 205 SITE 5 AC1 18 HOH A 211 HOH A 219 SITE 1 AC2 12 PRO A 12 SER A 13 GLY A 14 VAL A 15 SITE 2 AC2 12 GLY A 16 LYS A 17 GLY A 18 LYS A 46 SITE 3 AC2 12 ARG A 139 5GP A 197 HOH A 211 HOH A 240 CRYST1 43.535 43.535 342.800 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022970 0.013262 0.000000 0.00000 SCALE2 0.000000 0.026524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002917 0.00000