HEADER LYASE 22-MAY-07 2Q0T TITLE CRYSTAL STRUCTURE OF A PUTATIVE GAMMA-CARBOXYMUCONOLACTONE TITLE 2 DECARBOXYLASE SUBUNIT (BXE_B0980) FROM BURKHOLDERIA XENOVORANS LB400 TITLE 3 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GAMMA-CARBOXYMUCONOLACTONE DECARBOXYLASE SUBUNIT; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 GENE: YP_554324.1, BXENO_B2006, BXE_B0980; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS AHPD-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2Q0T 1 SEQADV REVDAT 6 24-JUL-19 2Q0T 1 REMARK LINK REVDAT 5 18-OCT-17 2Q0T 1 REMARK REVDAT 4 13-JUL-11 2Q0T 1 VERSN REVDAT 3 23-MAR-11 2Q0T 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2Q0T 1 VERSN REVDAT 1 12-JUN-07 2Q0T 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE GAMMA-CARBOXYMUCONOLACTONE JRNL TITL 2 DECARBOXYLASE SUBUNIT (YP_554324.1) FROM BURKHOLDERIA JRNL TITL 3 XENOVORANS LB400 AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 86554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6050 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 297 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 943 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 16.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6180 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4252 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8425 ; 1.509 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10321 ; 1.070 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 781 ; 4.988 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;33.085 ;22.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1013 ;12.462 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;16.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 941 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6956 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1293 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1534 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4694 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3057 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2909 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 737 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4282 ; 2.115 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1547 ; 0.570 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6216 ; 2.575 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2537 ; 4.525 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2209 ; 6.327 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6781 28.8903 35.8457 REMARK 3 T TENSOR REMARK 3 T11: -0.0066 T22: -0.0319 REMARK 3 T33: -0.0268 T12: -0.0019 REMARK 3 T13: -0.0042 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2044 L22: 0.2961 REMARK 3 L33: 0.1647 L12: -0.0609 REMARK 3 L13: -0.0175 L23: -0.0287 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.0018 S13: -0.0021 REMARK 3 S21: 0.0771 S22: 0.0061 S23: -0.0037 REMARK 3 S31: 0.0227 S32: 0.0006 S33: -0.0189 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4877 47.1320 23.8079 REMARK 3 T TENSOR REMARK 3 T11: -0.0292 T22: -0.0215 REMARK 3 T33: -0.0069 T12: -0.0007 REMARK 3 T13: 0.0092 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.2436 L22: 0.3048 REMARK 3 L33: 0.3334 L12: -0.1228 REMARK 3 L13: -0.0259 L23: 0.1343 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.0635 S13: 0.0968 REMARK 3 S21: 0.0254 S22: 0.0021 S23: -0.0043 REMARK 3 S31: -0.0568 S32: 0.0124 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 254 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4874 27.2564 13.4167 REMARK 3 T TENSOR REMARK 3 T11: -0.0347 T22: 0.0044 REMARK 3 T33: -0.0506 T12: 0.0095 REMARK 3 T13: -0.0052 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4757 L22: 0.3460 REMARK 3 L33: 0.2948 L12: 0.0216 REMARK 3 L13: -0.0486 L23: -0.0409 REMARK 3 S TENSOR REMARK 3 S11: 0.0175 S12: 0.1614 S13: -0.0031 REMARK 3 S21: -0.0263 S22: -0.0078 S23: 0.0072 REMARK 3 S31: 0.0525 S32: 0.0245 S33: -0.0097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO REMARK 3 ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. UNUSUAL NEGATIVE AND POSITIVE DENSITIES WERE PRESENT REMARK 3 NEAR MSE RESIDUES 191 AND 225 OF A, B AND C SUBUNITS. REMARK 3 5. UNEXPLAINED ELECTRON DENSITIES NEAR RESIDUES 151 OF B REMARK 3 AND C SUBUNITS WERE NOT MODELED. REMARK 4 REMARK 4 2Q0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000043006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97941, 0.97905 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86578 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.086 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 20.0% PEG 8000, 0.1M HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.55500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 3 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT REMARK 300 OF A TRIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 258 REMARK 465 GLU A 259 REMARK 465 PRO A 260 REMARK 465 HIS A 261 REMARK 465 ALA A 262 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 GLN B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 ALA B 255 REMARK 465 ALA B 256 REMARK 465 ALA B 257 REMARK 465 GLY B 258 REMARK 465 GLU B 259 REMARK 465 PRO B 260 REMARK 465 HIS B 261 REMARK 465 ALA B 262 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 THR C 2 REMARK 465 GLN C 3 REMARK 465 THR C 4 REMARK 465 THR C 5 REMARK 465 ALA C 255 REMARK 465 ALA C 256 REMARK 465 ALA C 257 REMARK 465 GLY C 258 REMARK 465 GLU C 259 REMARK 465 PRO C 260 REMARK 465 HIS C 261 REMARK 465 ALA C 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CD NE CZ NH1 NH2 REMARK 470 GLN A 50 CD OE1 NE2 REMARK 470 GLU A 84 CD OE1 OE2 REMARK 470 ARG B 19 CD NE CZ NH1 NH2 REMARK 470 LYS B 23 CD CE NZ REMARK 470 GLN B 50 CD OE1 NE2 REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 GLU B 222 OE1 OE2 REMARK 470 ARG C 19 CD NE CZ NH1 NH2 REMARK 470 LYS C 23 CD CE NZ REMARK 470 GLN C 50 CD OE1 NE2 REMARK 470 LYS C 129 CE NZ REMARK 470 LYS C 251 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 84 CG GLU B 84 CD 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 52 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 85 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 88.14 -160.75 REMARK 500 LEU A 74 58.82 39.47 REMARK 500 ASP A 163 67.80 -153.68 REMARK 500 HIS A 201 -56.30 -138.24 REMARK 500 ASP B 35 86.87 -160.40 REMARK 500 LEU B 74 57.87 38.15 REMARK 500 HIS B 201 -57.10 -131.68 REMARK 500 LEU C 55 -159.46 -92.50 REMARK 500 HIS C 201 -60.40 -128.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 370057 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2Q0T A 1 262 UNP Q13LR5 Q13LR5_BURXL 1 262 DBREF 2Q0T B 1 262 UNP Q13LR5 Q13LR5_BURXL 1 262 DBREF 2Q0T C 1 262 UNP Q13LR5 Q13LR5_BURXL 1 262 SEQADV 2Q0T GLY A 0 UNP Q13LR5 EXPRESSION TAG SEQADV 2Q0T MSE A 1 UNP Q13LR5 MET 1 MODIFIED RESIDUE SEQADV 2Q0T MSE A 191 UNP Q13LR5 MET 191 MODIFIED RESIDUE SEQADV 2Q0T MSE A 225 UNP Q13LR5 MET 225 MODIFIED RESIDUE SEQADV 2Q0T GLY B 0 UNP Q13LR5 EXPRESSION TAG SEQADV 2Q0T MSE B 1 UNP Q13LR5 MET 1 MODIFIED RESIDUE SEQADV 2Q0T MSE B 191 UNP Q13LR5 MET 191 MODIFIED RESIDUE SEQADV 2Q0T MSE B 225 UNP Q13LR5 MET 225 MODIFIED RESIDUE SEQADV 2Q0T GLY C 0 UNP Q13LR5 EXPRESSION TAG SEQADV 2Q0T MSE C 1 UNP Q13LR5 MET 1 MODIFIED RESIDUE SEQADV 2Q0T MSE C 191 UNP Q13LR5 MET 191 MODIFIED RESIDUE SEQADV 2Q0T MSE C 225 UNP Q13LR5 MET 225 MODIFIED RESIDUE SEQRES 1 A 263 GLY MSE THR GLN THR THR PRO GLN PRO ASP PRO SER ARG SEQRES 2 A 263 LEU ARG ASP GLU LEU VAL ARG LEU HIS GLY LYS ALA SER SEQRES 3 A 263 PRO GLU TRP ASP SER LEU VAL ARG LEU ASP PRO ARG PHE SEQRES 4 A 263 VAL ASP ALA TYR LEU LYS PHE ALA GLY VAL PRO GLN ARG SEQRES 5 A 263 ARG ASN HIS LEU ASP ASP LYS THR ARG ALA PHE ILE ALA SEQRES 6 A 263 LEU ALA ALA ASP ALA CYS ALA THR GLN LEU TYR ALA PRO SEQRES 7 A 263 GLY VAL ALA ARG HIS ILE GLU ARG ALA LEU SER PHE GLY SEQRES 8 A 263 ALA THR ARG GLU GLU LEU ILE GLU VAL LEU GLU LEU VAL SEQRES 9 A 263 SER THR ILE GLY ILE HIS THR SER ASN VAL GLY VAL PRO SEQRES 10 A 263 VAL LEU LEU GLU VAL LEU GLU GLU GLU GLY LEU ARG LYS SEQRES 11 A 263 GLY ALA PRO PRO LEU ASP GLU ARG ARG GLN LYS LEU LYS SEQRES 12 A 263 ALA GLU PHE GLU THR ASN ARG GLY TYR TRP HIS PRO THR SEQRES 13 A 263 TRP GLU GLY LEU LEU GLU LEU ASP PRO ASP LEU PHE GLU SEQRES 14 A 263 ALA TYR VAL GLU PHE SER SER VAL PRO TRP ARG THR GLY SEQRES 15 A 263 VAL LEU SER PRO LYS ILE LYS GLU PHE MSE TYR CYS ALA SEQRES 16 A 263 PHE ASP ALA SER ALA THR HIS LEU TYR VAL PRO GLY LEU SEQRES 17 A 263 LYS LEU HIS ILE ARG ASN ALA LEU ARG TYR GLY ALA THR SEQRES 18 A 263 ALA GLU GLU LEU MSE GLU LEU LEU GLU ILE VAL SER VAL SEQRES 19 A 263 THR GLY ILE HIS GLY ALA GLU LEU GLY ALA PRO LEU LEU SEQRES 20 A 263 GLU ALA ALA LEU LYS ARG SER GLY ALA ALA ALA GLY GLU SEQRES 21 A 263 PRO HIS ALA SEQRES 1 B 263 GLY MSE THR GLN THR THR PRO GLN PRO ASP PRO SER ARG SEQRES 2 B 263 LEU ARG ASP GLU LEU VAL ARG LEU HIS GLY LYS ALA SER SEQRES 3 B 263 PRO GLU TRP ASP SER LEU VAL ARG LEU ASP PRO ARG PHE SEQRES 4 B 263 VAL ASP ALA TYR LEU LYS PHE ALA GLY VAL PRO GLN ARG SEQRES 5 B 263 ARG ASN HIS LEU ASP ASP LYS THR ARG ALA PHE ILE ALA SEQRES 6 B 263 LEU ALA ALA ASP ALA CYS ALA THR GLN LEU TYR ALA PRO SEQRES 7 B 263 GLY VAL ALA ARG HIS ILE GLU ARG ALA LEU SER PHE GLY SEQRES 8 B 263 ALA THR ARG GLU GLU LEU ILE GLU VAL LEU GLU LEU VAL SEQRES 9 B 263 SER THR ILE GLY ILE HIS THR SER ASN VAL GLY VAL PRO SEQRES 10 B 263 VAL LEU LEU GLU VAL LEU GLU GLU GLU GLY LEU ARG LYS SEQRES 11 B 263 GLY ALA PRO PRO LEU ASP GLU ARG ARG GLN LYS LEU LYS SEQRES 12 B 263 ALA GLU PHE GLU THR ASN ARG GLY TYR TRP HIS PRO THR SEQRES 13 B 263 TRP GLU GLY LEU LEU GLU LEU ASP PRO ASP LEU PHE GLU SEQRES 14 B 263 ALA TYR VAL GLU PHE SER SER VAL PRO TRP ARG THR GLY SEQRES 15 B 263 VAL LEU SER PRO LYS ILE LYS GLU PHE MSE TYR CYS ALA SEQRES 16 B 263 PHE ASP ALA SER ALA THR HIS LEU TYR VAL PRO GLY LEU SEQRES 17 B 263 LYS LEU HIS ILE ARG ASN ALA LEU ARG TYR GLY ALA THR SEQRES 18 B 263 ALA GLU GLU LEU MSE GLU LEU LEU GLU ILE VAL SER VAL SEQRES 19 B 263 THR GLY ILE HIS GLY ALA GLU LEU GLY ALA PRO LEU LEU SEQRES 20 B 263 GLU ALA ALA LEU LYS ARG SER GLY ALA ALA ALA GLY GLU SEQRES 21 B 263 PRO HIS ALA SEQRES 1 C 263 GLY MSE THR GLN THR THR PRO GLN PRO ASP PRO SER ARG SEQRES 2 C 263 LEU ARG ASP GLU LEU VAL ARG LEU HIS GLY LYS ALA SER SEQRES 3 C 263 PRO GLU TRP ASP SER LEU VAL ARG LEU ASP PRO ARG PHE SEQRES 4 C 263 VAL ASP ALA TYR LEU LYS PHE ALA GLY VAL PRO GLN ARG SEQRES 5 C 263 ARG ASN HIS LEU ASP ASP LYS THR ARG ALA PHE ILE ALA SEQRES 6 C 263 LEU ALA ALA ASP ALA CYS ALA THR GLN LEU TYR ALA PRO SEQRES 7 C 263 GLY VAL ALA ARG HIS ILE GLU ARG ALA LEU SER PHE GLY SEQRES 8 C 263 ALA THR ARG GLU GLU LEU ILE GLU VAL LEU GLU LEU VAL SEQRES 9 C 263 SER THR ILE GLY ILE HIS THR SER ASN VAL GLY VAL PRO SEQRES 10 C 263 VAL LEU LEU GLU VAL LEU GLU GLU GLU GLY LEU ARG LYS SEQRES 11 C 263 GLY ALA PRO PRO LEU ASP GLU ARG ARG GLN LYS LEU LYS SEQRES 12 C 263 ALA GLU PHE GLU THR ASN ARG GLY TYR TRP HIS PRO THR SEQRES 13 C 263 TRP GLU GLY LEU LEU GLU LEU ASP PRO ASP LEU PHE GLU SEQRES 14 C 263 ALA TYR VAL GLU PHE SER SER VAL PRO TRP ARG THR GLY SEQRES 15 C 263 VAL LEU SER PRO LYS ILE LYS GLU PHE MSE TYR CYS ALA SEQRES 16 C 263 PHE ASP ALA SER ALA THR HIS LEU TYR VAL PRO GLY LEU SEQRES 17 C 263 LYS LEU HIS ILE ARG ASN ALA LEU ARG TYR GLY ALA THR SEQRES 18 C 263 ALA GLU GLU LEU MSE GLU LEU LEU GLU ILE VAL SER VAL SEQRES 19 C 263 THR GLY ILE HIS GLY ALA GLU LEU GLY ALA PRO LEU LEU SEQRES 20 C 263 GLU ALA ALA LEU LYS ARG SER GLY ALA ALA ALA GLY GLU SEQRES 21 C 263 PRO HIS ALA MODRES 2Q0T MSE A 1 MET SELENOMETHIONINE MODRES 2Q0T MSE A 191 MET SELENOMETHIONINE MODRES 2Q0T MSE A 225 MET SELENOMETHIONINE MODRES 2Q0T MSE B 191 MET SELENOMETHIONINE MODRES 2Q0T MSE B 225 MET SELENOMETHIONINE MODRES 2Q0T MSE C 191 MET SELENOMETHIONINE MODRES 2Q0T MSE C 225 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 191 8 HET MSE A 225 8 HET MSE B 191 8 HET MSE B 225 8 HET MSE C 191 8 HET MSE C 225 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 4 HOH *943(H2 O) HELIX 1 1 ASP A 9 GLY A 22 1 14 HELIX 2 2 SER A 25 ASP A 35 1 11 HELIX 3 3 ASP A 35 ASN A 53 1 19 HELIX 4 4 ASP A 56 CYS A 70 1 15 HELIX 5 5 TYR A 75 PHE A 89 1 15 HELIX 6 6 THR A 92 SER A 104 1 13 HELIX 7 7 THR A 105 GLY A 107 5 3 HELIX 8 8 ILE A 108 GLU A 125 1 18 HELIX 9 9 ASP A 135 GLY A 150 1 16 HELIX 10 10 HIS A 153 ASP A 163 1 11 HELIX 11 11 ASP A 163 GLY A 181 1 19 HELIX 12 12 SER A 184 SER A 198 1 15 HELIX 13 13 TYR A 203 TYR A 217 1 15 HELIX 14 14 THR A 220 SER A 232 1 13 HELIX 15 15 VAL A 233 GLY A 235 5 3 HELIX 16 16 ILE A 236 SER A 253 1 18 HELIX 17 17 ASP B 9 GLY B 22 1 14 HELIX 18 18 SER B 25 ASP B 35 1 11 HELIX 19 19 ASP B 35 ASN B 53 1 19 HELIX 20 20 ASP B 56 CYS B 70 1 15 HELIX 21 21 TYR B 75 PHE B 89 1 15 HELIX 22 22 THR B 92 SER B 104 1 13 HELIX 23 23 THR B 105 GLY B 107 5 3 HELIX 24 24 ILE B 108 GLU B 125 1 18 HELIX 25 25 ASP B 135 GLY B 150 1 16 HELIX 26 26 HIS B 153 THR B 155 5 3 HELIX 27 27 TRP B 156 ASP B 163 1 8 HELIX 28 28 ASP B 163 GLY B 181 1 19 HELIX 29 29 SER B 184 SER B 198 1 15 HELIX 30 30 TYR B 203 TYR B 217 1 15 HELIX 31 31 THR B 220 SER B 232 1 13 HELIX 32 32 VAL B 233 GLY B 235 5 3 HELIX 33 33 ILE B 236 GLY B 254 1 19 HELIX 34 34 ASP C 9 GLY C 22 1 14 HELIX 35 35 SER C 25 ASP C 35 1 11 HELIX 36 36 ASP C 35 GLY C 47 1 13 HELIX 37 37 GLY C 47 ASN C 53 1 7 HELIX 38 38 ASP C 56 CYS C 70 1 15 HELIX 39 39 TYR C 75 PHE C 89 1 15 HELIX 40 40 THR C 92 SER C 104 1 13 HELIX 41 41 THR C 105 GLY C 107 5 3 HELIX 42 42 ILE C 108 GLU C 125 1 18 HELIX 43 43 ASP C 135 GLY C 150 1 16 HELIX 44 44 HIS C 153 THR C 155 5 3 HELIX 45 45 TRP C 156 ASP C 163 1 8 HELIX 46 46 ASP C 163 GLY C 181 1 19 HELIX 47 47 SER C 184 SER C 198 1 15 HELIX 48 48 TYR C 203 TYR C 217 1 15 HELIX 49 49 THR C 220 SER C 232 1 13 HELIX 50 50 VAL C 233 GLY C 235 5 3 HELIX 51 51 ILE C 236 GLY C 254 1 19 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C PHE A 190 N MSE A 191 1555 1555 1.34 LINK C MSE A 191 N ATYR A 192 1555 1555 1.33 LINK C MSE A 191 N BTYR A 192 1555 1555 1.33 LINK C LEU A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N GLU A 226 1555 1555 1.34 LINK C PHE B 190 N MSE B 191 1555 1555 1.34 LINK C MSE B 191 N TYR B 192 1555 1555 1.34 LINK C LEU B 224 N MSE B 225 1555 1555 1.32 LINK C MSE B 225 N GLU B 226 1555 1555 1.31 LINK C PHE C 190 N MSE C 191 1555 1555 1.33 LINK C MSE C 191 N TYR C 192 1555 1555 1.33 LINK C LEU C 224 N MSE C 225 1555 1555 1.34 LINK C MSE C 225 N GLU C 226 1555 1555 1.31 CRYST1 50.300 83.110 99.260 90.00 103.16 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019881 0.000000 0.004648 0.00000 SCALE2 0.000000 0.012032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010346 0.00000