HEADER HYDROLASE 29-MAR-07 2PC5 TITLE NATIVE CRYSTAL STRUCTURE ANALYSIS ON ARABIDOPSIS DUTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUTP PYROPHOSPHATASE-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.6.1.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: T6H20.30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS DUTPASE, ARABIDOPSIS, MAGNESIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MORIYAMA,M.BAJAJ REVDAT 3 13-JUL-11 2PC5 1 VERSN REVDAT 2 24-FEB-09 2PC5 1 VERSN REVDAT 1 12-FEB-08 2PC5 0 JRNL AUTH M.BAJAJ,H.MORIYAMA JRNL TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY JRNL TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF DEOXYURIDINE TRIPHOSPHATE JRNL TITL 3 NUCLEOTIDOHYDROLASE FROM ARABIDOPSIS THALIANA. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 63 409 2007 JRNL REFN ESSN 1744-3091 JRNL PMID 17565183 JRNL DOI 10.1107/S1744309107016004 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 992 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2865 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.028 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2926 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3979 ; 2.075 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 8.048 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;34.219 ;23.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;18.013 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.612 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.173 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2185 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1198 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1954 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 186 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1949 ; 1.120 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3072 ; 1.843 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1103 ; 3.141 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 907 ; 4.901 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB042215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : BLUE REMARK 200 OPTICS : BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 57.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.12300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 37.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1Q5H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M TRIS-HCL REMARK 280 PH 9.0, 0.02 M TAURINE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.95150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.77750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.77750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.95150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS MOLECULE IS A TRIMER. THIS ENTRY CONTAIN COMPLETE REMARK 300 BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 CYS A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 LYS A 10 REMARK 465 LEU A 11 REMARK 465 GLN A 12 REMARK 465 LYS A 13 REMARK 465 LEU A 14 REMARK 465 ASP A 15 REMARK 465 ARG A 16 REMARK 465 ASN A 17 REMARK 465 GLY A 18 REMARK 465 ILE A 19 REMARK 465 HIS A 20 REMARK 465 GLY A 21 REMARK 465 ASP A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 GLU A 153 REMARK 465 THR A 154 REMARK 465 VAL A 155 REMARK 465 ARG A 156 REMARK 465 GLY A 157 REMARK 465 ASP A 158 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 PHE A 161 REMARK 465 GLY A 162 REMARK 465 SER A 163 REMARK 465 THR A 164 REMARK 465 GLY A 165 REMARK 465 VAL A 166 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 CYS B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 SER B 8 REMARK 465 PRO B 9 REMARK 465 LYS B 10 REMARK 465 LEU B 11 REMARK 465 GLN B 12 REMARK 465 LYS B 13 REMARK 465 LEU B 14 REMARK 465 ASP B 15 REMARK 465 ARG B 16 REMARK 465 ASN B 17 REMARK 465 GLY B 18 REMARK 465 ILE B 19 REMARK 465 HIS B 20 REMARK 465 GLY B 21 REMARK 465 ASP B 22 REMARK 465 SER B 23 REMARK 465 SER B 24 REMARK 465 LEU B 151 REMARK 465 ASP B 152 REMARK 465 GLU B 153 REMARK 465 THR B 154 REMARK 465 VAL B 155 REMARK 465 ARG B 156 REMARK 465 GLY B 157 REMARK 465 ASP B 158 REMARK 465 GLY B 159 REMARK 465 GLY B 160 REMARK 465 PHE B 161 REMARK 465 GLY B 162 REMARK 465 SER B 163 REMARK 465 THR B 164 REMARK 465 GLY B 165 REMARK 465 VAL B 166 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 CYS C 3 REMARK 465 VAL C 4 REMARK 465 ASN C 5 REMARK 465 GLU C 6 REMARK 465 PRO C 7 REMARK 465 SER C 8 REMARK 465 PRO C 9 REMARK 465 LYS C 10 REMARK 465 LEU C 11 REMARK 465 GLN C 12 REMARK 465 LYS C 13 REMARK 465 LEU C 14 REMARK 465 ASP C 15 REMARK 465 ARG C 16 REMARK 465 ASN C 17 REMARK 465 GLY C 18 REMARK 465 ILE C 19 REMARK 465 HIS C 20 REMARK 465 GLY C 21 REMARK 465 ASP C 22 REMARK 465 SER C 23 REMARK 465 SER C 24 REMARK 465 PRO C 25 REMARK 465 GLU C 153 REMARK 465 THR C 154 REMARK 465 VAL C 155 REMARK 465 ARG C 156 REMARK 465 GLY C 157 REMARK 465 ASP C 158 REMARK 465 GLY C 159 REMARK 465 GLY C 160 REMARK 465 PHE C 161 REMARK 465 GLY C 162 REMARK 465 SER C 163 REMARK 465 THR C 164 REMARK 465 GLY C 165 REMARK 465 VAL C 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 70 C THR A 71 N -0.195 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 131 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 VAL A 145 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP B 107 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 -132.94 52.58 REMARK 500 HIS A 119 31.97 -97.80 REMARK 500 SER B 26 101.92 44.70 REMARK 500 SER B 45 147.63 174.77 REMARK 500 ALA B 63 124.53 -38.75 REMARK 500 ALA B 101 -125.58 46.35 REMARK 500 HIS B 119 35.90 -86.36 REMARK 500 VAL B 146 81.39 8.85 REMARK 500 ASP B 149 59.23 -108.51 REMARK 500 ALA C 101 -129.58 46.33 REMARK 500 HIS C 119 49.03 -91.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 115 23.7 L L OUTSIDE RANGE REMARK 500 SER B 26 23.7 L L OUTSIDE RANGE REMARK 500 ASP B 130 20.3 L L OUTSIDE RANGE REMARK 500 VAL B 146 24.7 L L OUTSIDE RANGE REMARK 500 ILE C 115 22.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 191 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH A 222 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 227 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH B 200 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH B 228 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 232 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH C 238 DISTANCE = 5.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 167 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 138 OE1 REMARK 620 2 GLU B 138 OE1 83.6 REMARK 620 3 GLU C 138 OE1 83.4 81.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P9O RELATED DB: PDB DBREF 2PC5 A 1 166 UNP Q9STG6 Q9STG6_ARATH 1 166 DBREF 2PC5 B 1 166 UNP Q9STG6 Q9STG6_ARATH 1 166 DBREF 2PC5 C 1 166 UNP Q9STG6 Q9STG6_ARATH 1 166 SEQADV 2PC5 GLY A -2 UNP Q9STG6 EXPRESSION TAG SEQADV 2PC5 SER A -1 UNP Q9STG6 EXPRESSION TAG SEQADV 2PC5 HIS A 0 UNP Q9STG6 EXPRESSION TAG SEQADV 2PC5 GLY B -2 UNP Q9STG6 EXPRESSION TAG SEQADV 2PC5 SER B -1 UNP Q9STG6 EXPRESSION TAG SEQADV 2PC5 HIS B 0 UNP Q9STG6 EXPRESSION TAG SEQADV 2PC5 GLY C -2 UNP Q9STG6 EXPRESSION TAG SEQADV 2PC5 SER C -1 UNP Q9STG6 EXPRESSION TAG SEQADV 2PC5 HIS C 0 UNP Q9STG6 EXPRESSION TAG SEQRES 1 A 169 GLY SER HIS MET ALA CYS VAL ASN GLU PRO SER PRO LYS SEQRES 2 A 169 LEU GLN LYS LEU ASP ARG ASN GLY ILE HIS GLY ASP SER SEQRES 3 A 169 SER PRO SER PRO PHE PHE LYS VAL LYS LYS LEU SER GLU SEQRES 4 A 169 LYS ALA VAL ILE PRO THR ARG GLY SER PRO LEU SER ALA SEQRES 5 A 169 GLY TYR ASP LEU SER SER ALA VAL ASP SER LYS VAL PRO SEQRES 6 A 169 ALA ARG GLY LYS ALA LEU ILE PRO THR ASP LEU SER ILE SEQRES 7 A 169 ALA VAL PRO GLU GLY THR TYR ALA ARG ILE ALA PRO ARG SEQRES 8 A 169 SER GLY LEU ALA TRP LYS HIS SER ILE ASP VAL GLY ALA SEQRES 9 A 169 GLY VAL ILE ASP ALA ASP TYR ARG GLY PRO VAL GLY VAL SEQRES 10 A 169 ILE LEU PHE ASN HIS SER ASP ALA ASP PHE GLU VAL LYS SEQRES 11 A 169 PHE GLY ASP ARG ILE ALA GLN LEU ILE ILE GLU LYS ILE SEQRES 12 A 169 VAL THR PRO ASP VAL VAL GLU VAL ASP ASP LEU ASP GLU SEQRES 13 A 169 THR VAL ARG GLY ASP GLY GLY PHE GLY SER THR GLY VAL SEQRES 1 B 169 GLY SER HIS MET ALA CYS VAL ASN GLU PRO SER PRO LYS SEQRES 2 B 169 LEU GLN LYS LEU ASP ARG ASN GLY ILE HIS GLY ASP SER SEQRES 3 B 169 SER PRO SER PRO PHE PHE LYS VAL LYS LYS LEU SER GLU SEQRES 4 B 169 LYS ALA VAL ILE PRO THR ARG GLY SER PRO LEU SER ALA SEQRES 5 B 169 GLY TYR ASP LEU SER SER ALA VAL ASP SER LYS VAL PRO SEQRES 6 B 169 ALA ARG GLY LYS ALA LEU ILE PRO THR ASP LEU SER ILE SEQRES 7 B 169 ALA VAL PRO GLU GLY THR TYR ALA ARG ILE ALA PRO ARG SEQRES 8 B 169 SER GLY LEU ALA TRP LYS HIS SER ILE ASP VAL GLY ALA SEQRES 9 B 169 GLY VAL ILE ASP ALA ASP TYR ARG GLY PRO VAL GLY VAL SEQRES 10 B 169 ILE LEU PHE ASN HIS SER ASP ALA ASP PHE GLU VAL LYS SEQRES 11 B 169 PHE GLY ASP ARG ILE ALA GLN LEU ILE ILE GLU LYS ILE SEQRES 12 B 169 VAL THR PRO ASP VAL VAL GLU VAL ASP ASP LEU ASP GLU SEQRES 13 B 169 THR VAL ARG GLY ASP GLY GLY PHE GLY SER THR GLY VAL SEQRES 1 C 169 GLY SER HIS MET ALA CYS VAL ASN GLU PRO SER PRO LYS SEQRES 2 C 169 LEU GLN LYS LEU ASP ARG ASN GLY ILE HIS GLY ASP SER SEQRES 3 C 169 SER PRO SER PRO PHE PHE LYS VAL LYS LYS LEU SER GLU SEQRES 4 C 169 LYS ALA VAL ILE PRO THR ARG GLY SER PRO LEU SER ALA SEQRES 5 C 169 GLY TYR ASP LEU SER SER ALA VAL ASP SER LYS VAL PRO SEQRES 6 C 169 ALA ARG GLY LYS ALA LEU ILE PRO THR ASP LEU SER ILE SEQRES 7 C 169 ALA VAL PRO GLU GLY THR TYR ALA ARG ILE ALA PRO ARG SEQRES 8 C 169 SER GLY LEU ALA TRP LYS HIS SER ILE ASP VAL GLY ALA SEQRES 9 C 169 GLY VAL ILE ASP ALA ASP TYR ARG GLY PRO VAL GLY VAL SEQRES 10 C 169 ILE LEU PHE ASN HIS SER ASP ALA ASP PHE GLU VAL LYS SEQRES 11 C 169 PHE GLY ASP ARG ILE ALA GLN LEU ILE ILE GLU LYS ILE SEQRES 12 C 169 VAL THR PRO ASP VAL VAL GLU VAL ASP ASP LEU ASP GLU SEQRES 13 C 169 THR VAL ARG GLY ASP GLY GLY PHE GLY SER THR GLY VAL HET MG A 167 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ FORMUL 5 HOH *212(H2 O) HELIX 1 1 ARG A 88 SER A 96 1 9 HELIX 2 2 ARG B 88 SER B 96 1 9 HELIX 3 3 ARG C 88 SER C 96 1 9 SHEET 1 A 3 LEU A 73 ALA A 76 0 SHEET 2 A 3 PHE A 29 LYS A 33 -1 N LYS A 32 O SER A 74 SHEET 3 A 3 VAL C 145 GLU C 147 1 O VAL C 146 N VAL A 31 SHEET 1 B 5 TYR A 51 SER A 54 0 SHEET 2 B 5 ARG A 131 VAL A 141 -1 O LEU A 135 N TYR A 51 SHEET 3 B 5 ARG B 131 VAL B 141 -1 O LYS B 139 N LYS A 139 SHEET 4 B 5 THR B 81 ALA B 86 -1 N ARG B 84 O ILE B 136 SHEET 5 B 5 VAL B 103 ASP B 105 -1 O ILE B 104 N ALA B 83 SHEET 1 C 6 GLY B 50 SER B 54 0 SHEET 2 C 6 ARG B 131 VAL B 141 -1 O LEU B 135 N TYR B 51 SHEET 3 C 6 ARG A 131 VAL A 141 -1 N LYS A 139 O LYS B 139 SHEET 4 C 6 ARG C 131 VAL C 141 -1 O LYS C 139 N LYS A 139 SHEET 5 C 6 TYR C 51 SER C 54 -1 N TYR C 51 O LEU C 135 SHEET 6 C 6 THR C 42 ARG C 43 -1 N THR C 42 O ASP C 52 SHEET 1 D 5 VAL C 103 ILE C 104 0 SHEET 2 D 5 THR C 81 ALA C 86 -1 N ALA C 83 O ILE C 104 SHEET 3 D 5 ARG A 131 VAL A 141 0 SHEET 4 D 5 THR A 81 ALA A 86 -1 N ARG A 84 O ILE A 136 SHEET 5 D 5 VAL A 103 ASP A 105 -1 O ILE A 104 N ALA A 83 SHEET 1 E 2 SER A 59 VAL A 61 0 SHEET 2 E 2 PHE A 124 VAL A 126 -1 O VAL A 126 N SER A 59 SHEET 1 F 3 LYS A 66 ILE A 69 0 SHEET 2 F 3 VAL A 114 ASN A 118 -1 O VAL A 114 N ILE A 69 SHEET 3 F 3 ILE A 97 GLY A 100 -1 N ASP A 98 O PHE A 117 SHEET 1 G 3 VAL A 145 GLU A 147 0 SHEET 2 G 3 PHE B 29 LYS B 33 1 O PHE B 29 N VAL A 146 SHEET 3 G 3 LEU B 73 ALA B 76 -1 O SER B 74 N LYS B 32 SHEET 1 H 2 SER B 59 VAL B 61 0 SHEET 2 H 2 PHE B 124 VAL B 126 -1 O PHE B 124 N VAL B 61 SHEET 1 I 3 LYS B 66 PRO B 70 0 SHEET 2 I 3 GLY B 113 ASN B 118 -1 O VAL B 114 N ILE B 69 SHEET 3 I 3 ILE B 97 VAL B 99 -1 N ASP B 98 O PHE B 117 SHEET 1 J 4 LYS C 30 LYS C 33 0 SHEET 2 J 4 LYS C 66 ALA C 76 -1 O SER C 74 N LYS C 32 SHEET 3 J 4 PRO C 111 ASN C 118 -1 O VAL C 114 N ILE C 69 SHEET 4 J 4 ILE C 97 GLY C 100 -1 N GLY C 100 O ILE C 115 SHEET 1 K 2 SER C 59 VAL C 61 0 SHEET 2 K 2 PHE C 124 VAL C 126 -1 O VAL C 126 N SER C 59 LINK OE1 GLU A 138 MG MG A 167 1555 1555 2.03 LINK OE1 GLU B 138 MG MG A 167 1555 1555 2.08 LINK OE1 GLU C 138 MG MG A 167 1555 1555 2.12 CISPEP 1 PRO B 25 SER B 26 0 -0.18 SITE 1 AC1 3 GLU A 138 GLU B 138 GLU C 138 CRYST1 69.903 70.860 75.555 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014306 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013235 0.00000