HEADER PROTEIN BINDING 21-DEC-06 2OD8 TITLE STRUCTURE OF A PEPTIDE DERIVED FROM CDC9 BOUND TO PCNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PCNA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA LIGASE I, MITOCHONDRIAL PRECURSOR; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 32-53; COMPND 10 SYNONYM: CDC9, POLYDEOXYRIBONUCLEOTIDE SYNTHASE; COMPND 11 EC: 6.5.1.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: POL30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7-PCNA; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: PEPTIDE SYNTHESIZED BASED ON CDC9 SEQUENCE (UNP SOURCE 14 P04819), RESIDUES 32-53. KEYWDS HOMOTRIMER, PCNA-PEPTIDE COMPLEX, PCNA, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.R.CHAPADOS,J.A.TAINER REVDAT 4 18-OCT-17 2OD8 1 REMARK REVDAT 3 13-JUL-11 2OD8 1 VERSN REVDAT 2 24-FEB-09 2OD8 1 VERSN REVDAT 1 01-MAY-07 2OD8 0 JRNL AUTH S.VIJAYAKUMAR,B.R.CHAPADOS,K.H.SCHMIDT,R.D.KOLODNER, JRNL AUTH 2 J.A.TAINER,A.E.TOMKINSON JRNL TITL THE C-TERMINAL DOMAIN OF YEAST PCNA IS REQUIRED FOR PHYSICAL JRNL TITL 2 AND FUNCTIONAL INTERACTIONS WITH CDC9 DNA LIGASE. JRNL REF NUCLEIC ACIDS RES. V. 35 1624 2007 JRNL REFN ISSN 0305-1048 JRNL PMID 17308348 JRNL DOI 10.1093/NAR/GKM006 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 537 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 786 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3930 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2095 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 94.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.684 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.361 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.371 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2127 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2866 ; 1.081 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 6.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;35.102 ;25.376 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;16.997 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1550 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 877 ; 0.160 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1423 ; 0.313 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 111 ; 0.172 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.125 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.168 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1362 ; 0.338 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2148 ; 0.607 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 837 ; 0.525 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 718 ; 0.879 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 45 REMARK 3 ORIGIN FOR THE GROUP (A): 140.5880 18.2650 47.4900 REMARK 3 T TENSOR REMARK 3 T11: 1.1783 T22: 1.0623 REMARK 3 T33: 1.1730 T12: 0.3405 REMARK 3 T13: 0.0515 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 11.4663 L22: 14.7756 REMARK 3 L33: 20.0460 L12: -4.1276 REMARK 3 L13: 13.9890 L23: 1.2566 REMARK 3 S TENSOR REMARK 3 S11: 1.2736 S12: -0.5391 S13: -1.3595 REMARK 3 S21: 0.9956 S22: -0.8022 S23: -2.6504 REMARK 3 S31: -1.1780 S32: 2.0207 S33: -0.4714 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 119.4550 21.1500 51.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.9884 T22: 0.5305 REMARK 3 T33: 0.4796 T12: 0.1721 REMARK 3 T13: -0.2015 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 4.1147 L22: 7.7453 REMARK 3 L33: 1.6087 L12: 4.8737 REMARK 3 L13: -0.8938 L23: 0.6118 REMARK 3 S TENSOR REMARK 3 S11: 0.1806 S12: -0.2079 S13: -0.0507 REMARK 3 S21: 1.0719 S22: 0.1373 S23: -0.1509 REMARK 3 S31: 0.7841 S32: 0.1530 S33: -0.3179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : 0.41800 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M (NH4)2SO4, SODIUM CITRATE, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.64000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 69.64000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.64000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 69.64000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 69.64000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 69.64000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 69.64000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.64000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 69.64000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 69.64000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 69.64000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 69.64000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 69.64000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 69.64000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 69.64000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 69.64000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 69.64000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 69.64000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 69.64000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 69.64000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 69.64000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 69.64000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 69.64000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 69.64000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 69.64000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 69.64000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y, Z, -X AND -Z, REMARK 300 -X, Y REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 139.28000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 139.28000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 139.28000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 139.28000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 256 REMARK 465 GLU A 257 REMARK 465 GLU A 258 REMARK 465 ALA B 32 REMARK 465 GLY B 33 REMARK 465 LYS B 34 REMARK 465 THR B 46 REMARK 465 SER B 47 REMARK 465 MET B 48 REMARK 465 LYS B 49 REMARK 465 ASN B 50 REMARK 465 LYS B 51 REMARK 465 PRO B 52 REMARK 465 THR B 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 24 -61.74 -101.61 REMARK 500 LYS A 31 -152.65 -116.39 REMARK 500 ASN A 83 87.73 -68.94 REMARK 500 ARG A 110 54.41 -146.43 REMARK 500 ASP A 122 47.35 75.15 REMARK 500 ALA A 123 -161.13 -122.20 REMARK 500 THR A 163 -164.41 -112.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN B IS THE PEPTIDE SYNTHESIZED BASED ON SEQUENCE OF REMARK 999 RESIDUES 32-53 OF CDC9 (UNP P04819) SHOWN IN DBREF. DBREF 2OD8 A 1 258 UNP P15873 PCNA_YEAST 1 258 DBREF 2OD8 B 32 53 UNP P04819 DNLI_YEAST 32 53 SEQRES 1 A 258 MET LEU GLU ALA LYS PHE GLU GLU ALA SER LEU PHE LYS SEQRES 2 A 258 ARG ILE ILE ASP GLY PHE LYS ASP CYS VAL GLN LEU VAL SEQRES 3 A 258 ASN PHE GLN CYS LYS GLU ASP GLY ILE ILE ALA GLN ALA SEQRES 4 A 258 VAL ASP ASP SER ARG VAL LEU LEU VAL SER LEU GLU ILE SEQRES 5 A 258 GLY VAL GLU ALA PHE GLN GLU TYR ARG CYS ASP HIS PRO SEQRES 6 A 258 VAL THR LEU GLY MET ASP LEU THR SER LEU SER LYS ILE SEQRES 7 A 258 LEU ARG CYS GLY ASN ASN THR ASP THR LEU THR LEU ILE SEQRES 8 A 258 ALA ASP ASN THR PRO ASP SER ILE ILE LEU LEU PHE GLU SEQRES 9 A 258 ASP THR LYS LYS ASP ARG ILE ALA GLU TYR SER LEU LYS SEQRES 10 A 258 LEU MET ASP ILE ASP ALA ASP PHE LEU LYS ILE GLU GLU SEQRES 11 A 258 LEU GLN TYR ASP SER THR LEU SER LEU PRO SER SER GLU SEQRES 12 A 258 PHE SER LYS ILE VAL ARG ASP LEU SER GLN LEU SER ASP SEQRES 13 A 258 SER ILE ASN ILE MET ILE THR LYS GLU THR ILE LYS PHE SEQRES 14 A 258 VAL ALA ASP GLY ASP ILE GLY SER GLY SER VAL ILE ILE SEQRES 15 A 258 LYS PRO PHE VAL ASP MET GLU HIS PRO GLU THR SER ILE SEQRES 16 A 258 LYS LEU GLU MET ASP GLN PRO VAL ASP LEU THR PHE GLY SEQRES 17 A 258 ALA LYS TYR LEU LEU ASP ILE ILE LYS GLY SER SER LEU SEQRES 18 A 258 SER ASP ARG VAL GLY ILE ARG LEU SER SER GLU ALA PRO SEQRES 19 A 258 ALA LEU PHE GLN PHE ASP LEU LYS SER GLY PHE LEU GLN SEQRES 20 A 258 PHE PHE LEU ALA PRO LYS PHE ASN ASP GLU GLU SEQRES 1 B 22 ALA GLY LYS LYS PRO LYS GLN ALA THR LEU ALA ARG PHE SEQRES 2 B 22 PHE THR SER MET LYS ASN LYS PRO THR FORMUL 3 HOH *18(H2 O) HELIX 1 1 GLU A 8 GLY A 18 1 11 HELIX 2 2 LEU A 72 ARG A 80 1 9 HELIX 3 3 SER A 141 SER A 152 1 12 HELIX 4 4 HIS A 190 SER A 194 5 5 HELIX 5 5 ALA A 209 ILE A 216 1 8 HELIX 6 6 LYS A 217 LEU A 221 5 5 HELIX 7 7 THR B 40 PHE B 45 5 6 SHEET 1 A 5 PHE A 57 CYS A 62 0 SHEET 2 A 5 LEU A 2 PHE A 6 -1 N GLU A 3 O ARG A 61 SHEET 3 A 5 THR A 87 ALA A 92 -1 O LEU A 88 N PHE A 6 SHEET 4 A 5 SER A 98 GLU A 104 -1 O ILE A 100 N ILE A 91 SHEET 5 A 5 ALA A 112 LYS A 117 -1 O ALA A 112 N PHE A 103 SHEET 1 B 9 VAL A 66 ASP A 71 0 SHEET 2 B 9 LEU A 25 CYS A 30 -1 N CYS A 30 O VAL A 66 SHEET 3 B 9 ILE A 35 VAL A 40 -1 O ILE A 36 N GLN A 29 SHEET 4 B 9 LEU A 46 ILE A 52 -1 O VAL A 48 N ALA A 39 SHEET 5 B 9 GLY A 244 LEU A 250 -1 O GLN A 247 N SER A 49 SHEET 6 B 9 ALA A 235 LEU A 241 -1 N PHE A 237 O PHE A 248 SHEET 7 B 9 ARG A 224 LEU A 229 -1 N GLY A 226 O GLN A 238 SHEET 8 B 9 SER A 135 PRO A 140 -1 N LEU A 137 O ILE A 227 SHEET 9 B 9 LYS A 196 MET A 199 -1 O LYS A 196 N SER A 138 SHEET 1 C 4 SER A 177 ILE A 182 0 SHEET 2 C 4 THR A 166 ASP A 172 -1 N PHE A 169 O VAL A 180 SHEET 3 C 4 SER A 157 THR A 163 -1 N ASN A 159 O VAL A 170 SHEET 4 C 4 VAL A 203 GLY A 208 -1 O PHE A 207 N ILE A 158 SHEET 1 D 2 LYS A 253 PHE A 254 0 SHEET 2 D 2 LYS B 37 GLN B 38 -1 O LYS B 37 N PHE A 254 CISPEP 1 ILE A 52 GLY A 53 0 9.56 CISPEP 2 ASN A 84 THR A 85 0 3.31 CISPEP 3 LYS A 108 ASP A 109 0 5.36 CISPEP 4 ILE A 121 ASP A 122 0 22.80 CISPEP 5 GLU A 129 GLU A 130 0 -19.59 CISPEP 6 LYS A 242 SER A 243 0 3.64 CRYST1 139.280 139.280 139.280 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007180 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007180 0.00000