HEADER STRUCTURAL PROTEIN 29-JUN-09 2KKQ TITLE SOLUTION NMR STRUCTURE OF THE IG-LIKE C2-TYPE 2 DOMAIN OF HUMAN TITLE 2 MYOTILIN. NORTHEAST STRUCTURAL GENOMICS TARGET HR3158. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOTILIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG-LIKE C2-TYPE 2 DOMAIN; COMPND 5 SYNONYM: TITIN IMMUNOGLOBULIN DOMAIN PROTEIN, MYOFIBRILLAR TITIN-LIKE COMPND 6 IG DOMAINS PROTEIN, 57 KDA CYTOSKELETAL PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYOT, TTID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS UNKNOWN FUNCTION, ACTIN-BINDING, CELL MEMBRANE, CYTOPLASM, KEYWDS 2 CYTOSKELETON, DISEASE MUTATION, IMMUNOGLOBULIN DOMAIN, LIMB-GIRDLE KEYWDS 3 MUSCULAR DYSTROPHY, MEMBRANE, MUSCLE PROTEIN, POLYMORPHISM, KEYWDS 4 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 5 STRUCTURAL GENOMICS CONSORTIUM, NESG, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ROSSI,R.SHASTRY,C.CICCOSANTI,K.HAMILTON,R.XIAO,T.B.ACTON, AUTHOR 2 G.V.T.SWAPNA,R.NAIR,J.K.EVERETT,B.ROST,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 26-FEB-20 2KKQ 1 REMARK SEQADV REVDAT 1 07-JUL-09 2KKQ 0 JRNL AUTH P.ROSSI,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF THE IG-LIKE C2-TYPE 2 DOMAIN OF JRNL TITL 2 HUMAN MYOTILIN. NORTHEAST STRUCTURAL GENOMICS TARGET HR3158. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CNS 1.3 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 20 OF 100 STRUCTURES LOWEST TARGET REMARK 3 FUNCTION SELECTED WITH CYANA-3.0. SELECTED MODELS ARE FURTHER REMARK 3 REFINED USING CNS IN EXPLICIT WATER SHELL (NILGES PROTOCOL WITH REMARK 3 PARAM19). STRUCTURE BASED ON 2412 NOE, 230 DIHE. MAX NOE REMARK 3 VIOLATION: 0.23 A (1MODEL); MAX DIHE VIOLATION: 8.1 DEG. 3 TOTAL REMARK 3 CLOSE CONTACTS PER 20 MODELS. STRUCTURE QUALITY FACTOR (PSVS 1.3) REMARK 3 : ORDERED RESIDUES RANGES: 11-112 FOR [S(PHI)+S(PSI)] > 1.8. REMARK 3 SECONDARY STRUCTURE - BETA STRANDS: 25-28, 31-38, 46-51, 54-55, REMARK 3 63-67, 72-80, 86-94, 97-108 RMSD(ANG): BACKBONE 0.4, ALL HEAVY REMARK 3 ATOMS 0.7. RAMA. DISTRIBUTION: 94.7/5.1/0.2/0.0. PROCHECK (PSI- REMARK 3 PHI): -0.39/-1.22 (RAW/Z), PROCHECK (ALL): -0.23/-1.36 (RAW/Z), REMARK 3 MOLPROBITY CLASH: 14.45/-1.01 (RAW/Z). RPF SCORES ALL ASSIGNED REMARK 3 RESIDUES (FIT OF NOESY PEAKLISTS TO STRUCTURE): RECALL: 0.892, REMARK 3 PRECISION: 0.934, F-MEASURE: 0.913, DP-SCORE: 0.76. REMARK 4 REMARK 4 2KKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101241. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.87 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 200 MM SODIUM CHLORIDE, REMARK 210 20 MM MES, 50 UM DSS, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 5 MM REMARK 210 CALCIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O; 0.68 MM [U-5% 13C] PROTEIN, REMARK 210 200 MM SODIUM CHLORIDE, 20 MM REMARK 210 MES, 50 UM DSS, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 COSY; 3D CCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HNCO; REMARK 210 3D HN(CA)CO; 2D 1H-15N HSQC; 2D REMARK 210 1H-13C HSQC; 2D 1H-13C HSQC REMARK 210 HIRES; 2D 1H-15N HET_NOE; 1D 15N_ REMARK 210 T1 SERIES; 1D 15N_T2 SERIES REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, SPARKY 2.113, REMARK 210 NMRPIPE, PINE, MOLMOL, PSVS 1.3, REMARK 210 PYMOL, PDBSTAT 5.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING AND BY REMARK 210 NMR. T1/T2(CPMG). CONSISTENT WITH MOLECULAR WEIGHT OF MONOMERIC REMARK 210 UNIT. STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. REMARK 210 NOESY ASSIGNMENTS BY CYANA-3.0. REMARK 210 ASSIGNMENT STATS (ALL RESIDUES INCLUDED): BACKBONE 90.16%, REMARK 210 SIDECHAIN 76.91%, AROMATIC (SC) 100%, STEREOSPECIFIC VL METHYL REMARK 210 ASSIGNMENT 100%, UNAMBIGUOUS SIDECHAIN NH2 100%. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 114 100.40 -58.50 REMARK 500 2 HIS A 4 101.95 -52.11 REMARK 500 2 SER A 9 89.03 -160.77 REMARK 500 2 ASN A 53 -14.21 73.67 REMARK 500 2 LEU A 115 151.06 66.91 REMARK 500 3 HIS A 3 -69.76 65.71 REMARK 500 3 HIS A 4 -79.38 63.58 REMARK 500 3 HIS A 6 47.16 -84.36 REMARK 500 3 HIS A 10 69.59 -152.86 REMARK 500 3 GLU A 29 108.98 -56.83 REMARK 500 3 ASN A 53 -8.02 79.57 REMARK 500 4 HIS A 3 85.29 -56.92 REMARK 500 4 ASN A 53 7.08 80.97 REMARK 500 4 ASN A 59 37.20 -82.41 REMARK 500 4 LEU A 115 95.07 61.06 REMARK 500 5 HIS A 4 -7.30 74.00 REMARK 500 5 HIS A 6 97.96 -53.65 REMARK 500 5 ASN A 53 -2.49 75.89 REMARK 500 5 ASN A 59 37.95 -90.49 REMARK 500 6 HIS A 4 -61.15 -107.03 REMARK 500 6 HIS A 8 85.71 -68.10 REMARK 500 8 SER A 9 -163.26 -122.97 REMARK 500 8 ASN A 53 -12.93 76.36 REMARK 500 8 ASN A 59 45.14 -82.16 REMARK 500 8 LEU A 115 75.74 55.19 REMARK 500 9 HIS A 5 90.88 63.43 REMARK 500 9 LEU A 115 83.73 60.54 REMARK 500 11 HIS A 8 -160.35 -100.46 REMARK 500 12 HIS A 10 10.86 -149.87 REMARK 500 12 ASN A 59 37.18 -84.03 REMARK 500 13 HIS A 3 -60.31 70.22 REMARK 500 13 HIS A 5 147.43 -173.39 REMARK 500 13 HIS A 8 -155.69 -133.23 REMARK 500 13 SER A 9 127.15 68.07 REMARK 500 13 ASN A 53 -4.92 71.37 REMARK 500 13 LEU A 115 107.90 60.97 REMARK 500 14 HIS A 4 3.11 -69.88 REMARK 500 14 HIS A 5 96.46 -55.47 REMARK 500 14 HIS A 7 78.86 -67.86 REMARK 500 14 ASN A 59 32.08 -95.32 REMARK 500 15 LEU A 115 100.60 61.20 REMARK 500 16 HIS A 4 107.32 -57.50 REMARK 500 16 HIS A 8 143.39 -178.87 REMARK 500 16 GLU A 29 105.65 -57.04 REMARK 500 16 ASN A 53 -13.75 71.80 REMARK 500 16 LEU A 115 80.49 58.20 REMARK 500 17 HIS A 6 -89.18 -131.91 REMARK 500 17 ASN A 53 -12.47 73.61 REMARK 500 17 THR A 114 -55.10 -126.41 REMARK 500 17 LEU A 115 84.33 59.56 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16370 RELATED DB: BMRB REMARK 900 RELATED ID: HR3158 RELATED DB: TARGETDB DBREF 2KKQ A 11 116 UNP Q9UBF9 MYOTI_HUMAN 344 449 SEQADV 2KKQ MET A 1 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ GLY A 2 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 3 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 4 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 5 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 6 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 7 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 8 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ SER A 9 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 10 UNP Q9UBF9 EXPRESSION TAG SEQRES 1 A 116 MET GLY HIS HIS HIS HIS HIS HIS SER HIS GLU HIS LYS SEQRES 2 A 116 ARG ALA PRO MET PHE ILE TYR LYS PRO GLN SER LYS LYS SEQRES 3 A 116 VAL LEU GLU GLY ASP SER VAL LYS LEU GLU CYS GLN ILE SEQRES 4 A 116 SER ALA ILE PRO PRO PRO LYS LEU PHE TRP LYS ARG ASN SEQRES 5 A 116 ASN GLU MET VAL GLN PHE ASN THR ASP ARG ILE SER LEU SEQRES 6 A 116 TYR GLN ASP ASN THR GLY ARG VAL THR LEU LEU ILE LYS SEQRES 7 A 116 ASP VAL ASN LYS LYS ASP ALA GLY TRP TYR THR VAL SER SEQRES 8 A 116 ALA VAL ASN GLU ALA GLY VAL THR THR CYS ASN THR ARG SEQRES 9 A 116 LEU ASP VAL THR ALA ARG PRO ASN GLN THR LEU PRO HELIX 1 1 ASN A 81 ALA A 85 5 5 SHEET 1 A 5 LYS A 25 LEU A 28 0 SHEET 2 A 5 GLY A 97 THR A 108 1 O ASP A 106 N LYS A 25 SHEET 3 A 5 GLY A 86 ASN A 94 -1 N TYR A 88 O THR A 103 SHEET 4 A 5 LYS A 46 ARG A 51 -1 N PHE A 48 O SER A 91 SHEET 5 A 5 GLU A 54 MET A 55 -1 O GLU A 54 N ARG A 51 SHEET 1 B 3 ASP A 31 GLN A 38 0 SHEET 2 B 3 ARG A 72 VAL A 80 -1 O LEU A 75 N LEU A 35 SHEET 3 B 3 ILE A 63 GLN A 67 -1 N SER A 64 O LEU A 76 CISPEP 1 ILE A 42 PRO A 43 1 -0.83 CISPEP 2 ILE A 42 PRO A 43 2 -1.40 CISPEP 3 ILE A 42 PRO A 43 3 -3.29 CISPEP 4 ILE A 42 PRO A 43 4 -3.18 CISPEP 5 ILE A 42 PRO A 43 5 -2.67 CISPEP 6 ILE A 42 PRO A 43 6 -2.77 CISPEP 7 ILE A 42 PRO A 43 7 -0.61 CISPEP 8 ILE A 42 PRO A 43 8 -2.22 CISPEP 9 ILE A 42 PRO A 43 9 -1.60 CISPEP 10 ILE A 42 PRO A 43 10 -3.82 CISPEP 11 ILE A 42 PRO A 43 11 -1.46 CISPEP 12 ILE A 42 PRO A 43 12 -3.99 CISPEP 13 ILE A 42 PRO A 43 13 -0.77 CISPEP 14 ILE A 42 PRO A 43 14 -3.51 CISPEP 15 ILE A 42 PRO A 43 15 -2.91 CISPEP 16 ILE A 42 PRO A 43 16 -1.30 CISPEP 17 ILE A 42 PRO A 43 17 -2.57 CISPEP 18 ILE A 42 PRO A 43 18 -3.41 CISPEP 19 ILE A 42 PRO A 43 19 -3.90 CISPEP 20 ILE A 42 PRO A 43 20 -1.10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20