HEADER TRANSCRIPTION REGULATOR 27-MAY-09 2KJB TITLE SOLUTION STRUCTURE OF CZRA IN THE DNA BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CZRA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REPRESSOR PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: RZCA, CZRA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET3D KEYWDS CZRA, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 2 TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR A.I.ARUNKUMAR,G.C.CAMPANELLO,D.P.GIEDROC REVDAT 2 20-OCT-21 2KJB 1 REMARK SEQADV REVDAT 1 10-NOV-09 2KJB 0 JRNL AUTH A.I.ARUNKUMAR,G.C.CAMPANELLO,D.P.GIEDROC JRNL TITL SOLUTION STRUCTURE OF A PARADIGM ARSR FAMILY ZINC SENSOR IN JRNL TITL 2 THE DNA-BOUND STATE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 18177 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19822742 JRNL DOI 10.1073/PNAS.0905558106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000101190. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8 MM 28 BP DUPLEX DNA, 10 MM REMARK 210 [U-99% 2H] MES, 0.1 MM SODIUM REMARK 210 CHLORIDE, 0.04 % DSS, 15 MG/ML REMARK 210 PF1 PHAGE, 1 MM [U-100% 2H,13C, REMARK 210 15N] CZRA, 93% H2O/7% D2O; 1.8 REMARK 210 MM 28 BP DUPLEX DNA, 10 MM [U-99% REMARK 210 2H] MES, 0.1 MM SODIUM CHLORIDE, REMARK 210 0.04 % DSS, 1.5 MM U-[2H,13C, REMARK 210 15N] ILED1-[CH3] LEU, VAL-[CH3/ REMARK 210 CH3] CZRA-11, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 13C/13C REMARK 210 EDITED METHYL NOESY; 1H-15N REMARK 210 TROSY-NOESY; 2D IPAP-HSQC; 3D REMARK 210 HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-21 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 SER A 104 REMARK 465 GLY A 105 REMARK 465 LEU A 106 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 TYR B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 ILE B 8 REMARK 465 SER B 104 REMARK 465 GLY B 105 REMARK 465 LEU B 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG3 LYS A 102 H GLU A 103 0.65 REMARK 500 HH21 ARG A 15 HD22 ASN B 99 0.76 REMARK 500 O ASN B 9 HG23 THR B 10 0.85 REMARK 500 HG SER B 38 H GLU B 39 1.01 REMARK 500 O HIS A 100 H LYS A 102 1.08 REMARK 500 O ASN A 99 HD3 PRO A 101 1.21 REMARK 500 NH2 ARG A 15 HD22 ASN B 99 1.21 REMARK 500 HB2 HIS B 100 HD2 PRO B 101 1.27 REMARK 500 HE3 LYS A 64 HB1 ALA A 71 1.30 REMARK 500 HA GLN A 53 HG21 VAL A 56 1.34 REMARK 500 O HIS A 97 H ASN A 99 1.39 REMARK 500 HH21 ARG A 15 ND2 ASN B 99 1.42 REMARK 500 HG3 LYS A 102 N GLU A 103 1.46 REMARK 500 O GLY A 43 H SER A 46 1.52 REMARK 500 OD1 ASN A 9 HG21 THR A 10 1.53 REMARK 500 C ASN B 9 HG23 THR B 10 1.55 REMARK 500 O ARG B 15 H GLU B 18 1.57 REMARK 500 O GLN B 48 H ASN B 50 1.58 REMARK 500 O PRO B 101 HG2 LYS B 102 1.58 REMARK 500 O LEU B 62 H SER B 65 1.58 REMARK 500 O ASN B 99 O HIS B 100 1.76 REMARK 500 O HIS A 100 N LYS A 102 2.01 REMARK 500 O GLY A 43 N SER A 46 2.16 REMARK 500 NH2 ARG A 15 ND2 ASN B 99 2.16 REMARK 500 O GLY B 43 OG SER B 46 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 14 -33.40 -39.45 REMARK 500 1 LEU A 23 158.81 -49.75 REMARK 500 1 ASN A 27 -21.35 -37.65 REMARK 500 1 VAL A 37 -67.44 -135.26 REMARK 500 1 HIS A 44 -54.44 -21.77 REMARK 500 1 HIS A 47 -71.86 -62.69 REMARK 500 1 LEU A 49 32.36 -78.52 REMARK 500 1 ASN A 50 77.86 26.13 REMARK 500 1 VAL A 56 -81.33 -39.10 REMARK 500 1 SER A 57 -36.08 -36.04 REMARK 500 1 GLN A 59 -75.03 -64.78 REMARK 500 1 LEU A 62 -83.25 -52.70 REMARK 500 1 LEU A 63 -60.49 -26.87 REMARK 500 1 HIS A 67 3.90 88.45 REMARK 500 1 GLN A 74 98.50 -164.43 REMARK 500 1 GLN A 76 -93.33 -140.23 REMARK 500 1 SER A 81 142.66 177.62 REMARK 500 1 ALA A 98 26.75 -57.01 REMARK 500 1 PRO A 101 44.01 -47.08 REMARK 500 1 LYS A 102 -171.80 78.25 REMARK 500 1 THR B 10 -157.39 175.20 REMARK 500 1 ASN B 27 -28.99 -38.78 REMARK 500 1 SER B 38 178.53 144.84 REMARK 500 1 GLU B 39 119.68 -170.63 REMARK 500 1 LEU B 49 18.71 -56.81 REMARK 500 1 VAL B 56 -78.67 -28.49 REMARK 500 1 GLN B 59 -84.72 -48.07 REMARK 500 1 LEU B 60 -55.99 -20.47 REMARK 500 1 LYS B 61 -78.48 -35.37 REMARK 500 1 LEU B 62 -84.79 -35.32 REMARK 500 1 LEU B 63 -58.95 -27.87 REMARK 500 1 HIS B 67 6.56 84.79 REMARK 500 1 GLN B 76 -82.28 -149.67 REMARK 500 1 SER B 81 144.27 153.39 REMARK 500 1 ALA B 98 -56.61 -23.19 REMARK 500 1 HIS B 100 -165.94 -32.06 REMARK 500 1 PRO B 101 -84.40 -74.13 REMARK 500 1 LYS B 102 -34.02 -158.63 REMARK 500 2 THR A 10 -28.96 -146.47 REMARK 500 2 ASP A 25 165.56 59.51 REMARK 500 2 ASN A 27 3.50 -62.83 REMARK 500 2 VAL A 37 71.69 -150.99 REMARK 500 2 SER A 46 -76.25 -67.78 REMARK 500 2 ASN A 50 62.72 60.98 REMARK 500 2 LEU A 62 -72.20 -52.17 REMARK 500 2 SER A 77 -167.73 -69.41 REMARK 500 2 LEU A 82 -157.57 -74.28 REMARK 500 2 ASP A 83 -66.32 -160.67 REMARK 500 2 ASP A 84 99.20 -69.61 REMARK 500 2 ALA A 98 -91.56 -51.04 REMARK 500 REMARK 500 THIS ENTRY HAS 604 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7376 RELATED DB: BMRB REMARK 900 ZN(II) BOUND CZRA REMARK 900 RELATED ID: 7377 RELATED DB: BMRB REMARK 900 DNA BOUND CZRA REMARK 900 RELATED ID: 15177 RELATED DB: BMRB REMARK 900 APO CZRA REMARK 900 RELATED ID: 2KJC RELATED DB: PDB DBREF 2KJB A 1 106 UNP O85142 O85142_STAAU 1 106 DBREF 2KJB B 1 106 UNP O85142 O85142_STAAU 1 106 SEQADV 2KJB ALA A 2 UNP O85142 SER 2 ENGINEERED MUTATION SEQADV 2KJB ALA B 2 UNP O85142 SER 2 ENGINEERED MUTATION SEQRES 1 A 106 MET ALA GLU GLN TYR SER GLU ILE ASN THR ASP THR LEU SEQRES 2 A 106 GLU ARG VAL THR GLU ILE PHE LYS ALA LEU GLY ASP TYR SEQRES 3 A 106 ASN ARG ILE ARG ILE MET GLU LEU LEU SER VAL SER GLU SEQRES 4 A 106 ALA SER VAL GLY HIS ILE SER HIS GLN LEU ASN LEU SER SEQRES 5 A 106 GLN SER ASN VAL SER HIS GLN LEU LYS LEU LEU LYS SER SEQRES 6 A 106 VAL HIS LEU VAL LYS ALA LYS ARG GLN GLY GLN SER MET SEQRES 7 A 106 ILE TYR SER LEU ASP ASP ILE HIS VAL ALA THR MET LEU SEQRES 8 A 106 LYS GLN ALA ILE HIS HIS ALA ASN HIS PRO LYS GLU SER SEQRES 9 A 106 GLY LEU SEQRES 1 B 106 MET ALA GLU GLN TYR SER GLU ILE ASN THR ASP THR LEU SEQRES 2 B 106 GLU ARG VAL THR GLU ILE PHE LYS ALA LEU GLY ASP TYR SEQRES 3 B 106 ASN ARG ILE ARG ILE MET GLU LEU LEU SER VAL SER GLU SEQRES 4 B 106 ALA SER VAL GLY HIS ILE SER HIS GLN LEU ASN LEU SER SEQRES 5 B 106 GLN SER ASN VAL SER HIS GLN LEU LYS LEU LEU LYS SER SEQRES 6 B 106 VAL HIS LEU VAL LYS ALA LYS ARG GLN GLY GLN SER MET SEQRES 7 B 106 ILE TYR SER LEU ASP ASP ILE HIS VAL ALA THR MET LEU SEQRES 8 B 106 LYS GLN ALA ILE HIS HIS ALA ASN HIS PRO LYS GLU SER SEQRES 9 B 106 GLY LEU HELIX 1 1 THR A 12 LEU A 23 1 12 HELIX 2 2 TYR A 26 SER A 36 1 11 HELIX 3 3 SER A 41 LEU A 49 1 9 HELIX 4 4 SER A 52 VAL A 66 1 15 HELIX 5 5 ASP A 84 ALA A 98 1 15 HELIX 6 6 ASP B 11 LEU B 23 1 13 HELIX 7 7 TYR B 26 VAL B 37 1 12 HELIX 8 8 SER B 41 LEU B 49 1 9 HELIX 9 9 SER B 52 VAL B 66 1 15 HELIX 10 10 ASP B 84 ALA B 98 1 15 SHEET 1 A 2 LYS B 70 ARG B 73 0 SHEET 2 A 2 MET B 78 SER B 81 -1 O ILE B 79 N LYS B 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20 MODEL 21