HEADER RNA BINDING PROTEIN 26-APR-06 2DNO TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN TRINUCLEOTIDE REPEAT TITLE 2 CONTAINING 4 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRINUCLEOTIDE REPEAT CONTAINING 4 VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051017-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DNO 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNO 1 VERSN REVDAT 1 26-OCT-06 2DNO 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN TRINUCLEOTIDE JRNL TITL 2 REPEAT CONTAINING 4 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025626. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM 13C-15N PROTEIN, 20MM D REMARK 210 -TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT,0.02% NAN3;90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 61 138.87 -174.04 REMARK 500 1 LYS A 72 144.55 -39.42 REMARK 500 1 PRO A 93 -15.27 -47.94 REMARK 500 1 ASP A 107 39.90 -83.53 REMARK 500 1 SER A 110 96.63 -58.97 REMARK 500 1 ASN A 129 -39.80 -34.46 REMARK 500 1 THR A 130 -71.88 -108.37 REMARK 500 1 LEU A 131 -38.98 -34.35 REMARK 500 1 SER A 134 -75.01 -91.71 REMARK 500 1 LEU A 137 148.63 -39.26 REMARK 500 1 SER A 141 -75.70 -32.01 REMARK 500 1 LEU A 144 101.51 -54.52 REMARK 500 1 PHE A 148 149.18 -39.49 REMARK 500 1 GLU A 152 131.45 -36.27 REMARK 500 2 ASP A 70 176.44 -59.40 REMARK 500 2 ARG A 71 -48.65 -131.42 REMARK 500 2 ASP A 86 -70.80 -52.89 REMARK 500 2 PRO A 93 -15.13 -47.99 REMARK 500 2 SER A 110 88.13 -58.55 REMARK 500 2 ASN A 129 -38.72 -37.05 REMARK 500 2 THR A 130 -71.42 -101.88 REMARK 500 2 HIS A 132 122.10 -34.64 REMARK 500 2 SER A 133 51.14 38.45 REMARK 500 2 SER A 134 -74.28 -95.38 REMARK 500 2 LEU A 137 143.68 -36.22 REMARK 500 2 SER A 141 -75.82 -32.38 REMARK 500 2 LYS A 153 42.15 -104.22 REMARK 500 3 SER A 61 -48.50 -134.73 REMARK 500 3 GLU A 69 43.09 -88.24 REMARK 500 3 ASP A 86 -72.57 -56.22 REMARK 500 3 PRO A 93 -15.00 -47.97 REMARK 500 3 THR A 130 -71.08 -102.73 REMARK 500 3 HIS A 132 116.95 -35.67 REMARK 500 3 SER A 133 52.89 39.33 REMARK 500 3 SER A 134 -74.09 -92.14 REMARK 500 3 LEU A 137 143.13 -37.63 REMARK 500 3 SER A 141 -75.68 -31.95 REMARK 500 3 LEU A 144 97.83 -66.67 REMARK 500 4 PRO A 93 -15.08 -48.01 REMARK 500 4 THR A 130 -73.69 -101.67 REMARK 500 4 LEU A 131 -37.26 -34.97 REMARK 500 4 SER A 134 -70.77 -96.34 REMARK 500 4 LEU A 137 141.99 -37.96 REMARK 500 4 SER A 141 -75.31 -31.89 REMARK 500 4 LEU A 144 115.06 -35.22 REMARK 500 4 SER A 155 149.66 -37.26 REMARK 500 4 SER A 158 83.83 -63.56 REMARK 500 5 SER A 61 -58.14 -129.35 REMARK 500 5 PRO A 93 -15.20 -48.00 REMARK 500 5 SER A 110 92.94 -67.98 REMARK 500 REMARK 500 THIS ENTRY HAS 212 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001111.1 RELATED DB: TARGETDB DBREF 2DNO A 66 154 UNP Q5SZQ7 Q5SZQ7_HUMAN 88 180 SEQADV 2DNO GLY A 59 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 60 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 61 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO GLY A 62 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 63 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 64 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO GLY A 65 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 155 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO GLY A 156 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO PRO A 157 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 158 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 159 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO GLY A 160 UNP Q5SZQ7 CLONING ARTIFACT SEQRES 1 A 102 GLY SER SER GLY SER SER GLY SER ARG GLY GLU ASP ARG SEQRES 2 A 102 LYS LEU PHE VAL GLY MET LEU GLY LYS GLN GLN THR ASP SEQRES 3 A 102 GLU ASP VAL ARG LYS MET PHE GLU PRO PHE GLY THR ILE SEQRES 4 A 102 ASP GLU CYS THR VAL LEU ARG GLY PRO ASP GLY THR SER SEQRES 5 A 102 LYS GLY CYS ALA PHE VAL LYS PHE GLN THR HIS ALA GLU SEQRES 6 A 102 ALA GLN ALA ALA ILE ASN THR LEU HIS SER SER ARG THR SEQRES 7 A 102 LEU PRO GLY ALA SER SER SER LEU VAL VAL LYS PHE ALA SEQRES 8 A 102 ASP THR GLU LYS GLU SER GLY PRO SER SER GLY HELIX 1 1 THR A 83 GLU A 92 1 10 HELIX 2 2 PRO A 93 GLY A 95 5 3 HELIX 3 3 THR A 120 HIS A 132 1 13 SHEET 1 A 4 ILE A 97 ARG A 104 0 SHEET 2 A 4 SER A 110 PHE A 118 -1 O LYS A 117 N ASP A 98 SHEET 3 A 4 LEU A 73 GLY A 76 -1 N VAL A 75 O ALA A 114 SHEET 4 A 4 VAL A 146 PHE A 148 -1 O LYS A 147 N PHE A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20