HEADER TRANSCRIPTION 24-MAY-05 2CTU TITLE SOLUTION STRUCTURE OF ZINC FINGER DOMAIN FROM HUMAN ZN TITLE 2 FINGER PROTEIN 483 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 483; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF483; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040910-15; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS ZINC FINGER DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KOBAYASHI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 2 24-FEB-09 2CTU 1 VERSN REVDAT 1 24-NOV-05 2CTU 0 JRNL AUTH N.KOBAYASHI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF ZINC FINGER DOMAIN FROM JRNL TITL 2 HUMAN ZN FINGER PROTEIN 483 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CTU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024612. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.29MM ZN-FINGER DOMAIN U- REMARK 210 13C,15N; 20MM PHOSPHATE BUFFER REMARK 210 NA (PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 0.05MM ZNCL2; REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9297, CYANA 2.0.17 REMARK 210 METHOD USED : TOSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 9 97.07 -60.96 REMARK 500 1 ARG A 17 -39.54 -34.61 REMARK 500 1 SER A 18 123.55 -39.69 REMARK 500 1 LEU A 34 99.85 -66.93 REMARK 500 1 SER A 35 114.05 -36.25 REMARK 500 1 ARG A 36 -51.68 -123.43 REMARK 500 1 LYS A 38 56.10 -90.39 REMARK 500 1 ASP A 48 49.71 -84.28 REMARK 500 1 GLU A 52 98.55 -62.27 REMARK 500 1 LYS A 57 -59.32 -125.85 REMARK 500 2 ARG A 17 42.63 -85.00 REMARK 500 2 CYS A 21 161.14 -43.30 REMARK 500 2 ARG A 36 132.42 -37.97 REMARK 500 2 PRO A 40 91.88 -69.81 REMARK 500 2 LYS A 47 37.96 -95.12 REMARK 500 2 SER A 49 77.86 -110.59 REMARK 500 2 ALA A 53 115.90 -165.68 REMARK 500 2 ALA A 54 79.92 -115.71 REMARK 500 2 THR A 67 91.81 -47.99 REMARK 500 2 PRO A 70 85.55 -69.73 REMARK 500 2 SER A 72 140.34 -36.06 REMARK 500 3 LYS A 8 145.27 -170.46 REMARK 500 3 LYS A 11 157.39 -39.55 REMARK 500 3 HIS A 13 44.32 -86.06 REMARK 500 3 CYS A 21 158.33 -44.87 REMARK 500 3 SER A 32 168.87 -49.06 REMARK 500 3 PRO A 40 88.77 -69.74 REMARK 500 3 ASP A 48 40.14 -83.96 REMARK 500 3 SER A 49 41.08 -104.96 REMARK 500 3 ALA A 53 40.93 34.65 REMARK 500 3 ASN A 61 -44.19 -131.37 REMARK 500 4 ARG A 31 -62.77 -107.00 REMARK 500 4 LEU A 55 149.26 -36.82 REMARK 500 4 ASN A 56 -62.23 -91.79 REMARK 500 4 GLU A 62 71.07 -109.88 REMARK 500 4 SER A 71 112.45 -35.75 REMARK 500 5 ASP A 16 -43.68 -131.20 REMARK 500 5 PRO A 40 81.56 -69.74 REMARK 500 5 ASP A 48 35.25 -83.55 REMARK 500 5 SER A 49 40.53 33.57 REMARK 500 5 GLN A 51 178.31 -51.27 REMARK 500 5 LEU A 55 150.16 -35.37 REMARK 500 5 LYS A 57 126.04 -31.76 REMARK 500 5 ASP A 58 -59.12 -122.28 REMARK 500 5 ASN A 61 -56.75 -122.28 REMARK 500 5 GLU A 62 -60.77 -124.65 REMARK 500 5 LYS A 65 156.66 -42.86 REMARK 500 5 SER A 68 40.23 34.82 REMARK 500 5 PRO A 70 3.47 -69.73 REMARK 500 6 SER A 18 121.45 -38.50 REMARK 500 6 CYS A 21 160.25 -47.12 REMARK 500 6 LEU A 34 -50.56 -131.96 REMARK 500 6 LYS A 38 -53.90 -126.48 REMARK 500 6 CYS A 50 119.92 -164.09 REMARK 500 6 GLN A 51 -46.83 -132.52 REMARK 500 6 ALA A 53 48.84 -85.25 REMARK 500 6 ASN A 61 130.83 -170.74 REMARK 500 6 SER A 63 -61.81 -125.09 REMARK 500 6 LYS A 65 42.60 -83.25 REMARK 500 7 SER A 5 42.71 37.79 REMARK 500 7 ARG A 17 25.02 41.90 REMARK 500 7 SER A 35 114.97 -35.78 REMARK 500 7 ARG A 37 116.69 -36.74 REMARK 500 7 SER A 68 68.00 -113.09 REMARK 500 8 ARG A 9 116.36 -174.78 REMARK 500 8 ASP A 16 36.05 -85.59 REMARK 500 8 CYS A 21 156.67 -44.64 REMARK 500 8 SER A 32 90.83 -61.54 REMARK 500 8 LEU A 34 -51.65 -127.07 REMARK 500 8 ARG A 36 44.77 33.81 REMARK 500 8 PRO A 40 97.16 -69.77 REMARK 500 8 GLU A 52 32.67 38.21 REMARK 500 8 ALA A 53 79.05 -100.93 REMARK 500 8 ASP A 58 112.15 -174.30 REMARK 500 8 GLU A 62 106.72 -34.91 REMARK 500 9 CYS A 21 152.17 -48.68 REMARK 500 9 ARG A 31 -64.77 -134.00 REMARK 500 9 ARG A 36 -65.38 -94.32 REMARK 500 9 PRO A 40 93.93 -69.77 REMARK 500 9 CYS A 50 158.75 -39.30 REMARK 500 9 ALA A 53 -59.84 -125.21 REMARK 500 9 SER A 71 41.80 -92.60 REMARK 500 10 SER A 3 130.80 -170.29 REMARK 500 10 LYS A 8 145.16 -35.40 REMARK 500 10 ILE A 12 44.11 31.00 REMARK 500 10 LYS A 23 -52.70 -124.27 REMARK 500 10 ARG A 31 -48.67 -132.06 REMARK 500 10 THR A 33 49.44 -82.15 REMARK 500 10 SER A 35 140.87 -37.07 REMARK 500 10 LYS A 38 53.34 72.59 REMARK 500 10 PRO A 40 93.94 -69.76 REMARK 500 10 GLN A 51 42.47 34.77 REMARK 500 10 LYS A 66 60.77 -106.36 REMARK 500 10 SER A 71 146.31 -34.51 REMARK 500 11 ARG A 17 164.50 -45.60 REMARK 500 11 SER A 18 116.07 -174.53 REMARK 500 11 CYS A 21 158.64 -45.29 REMARK 500 11 SER A 32 48.17 -86.52 REMARK 500 11 THR A 33 43.52 -93.00 REMARK 500 11 SER A 35 51.95 -109.18 REMARK 500 11 ARG A 37 70.41 -68.60 REMARK 500 11 PRO A 40 88.24 -69.75 REMARK 500 11 ASP A 48 131.44 -35.44 REMARK 500 11 GLN A 51 78.12 -112.11 REMARK 500 11 ASP A 58 48.03 -83.43 REMARK 500 11 GLU A 62 86.69 -64.81 REMARK 500 11 LYS A 66 45.89 -89.28 REMARK 500 11 SER A 68 108.89 -43.15 REMARK 500 11 PRO A 70 89.06 -69.78 REMARK 500 12 ILE A 12 142.45 -36.49 REMARK 500 12 ARG A 31 -62.46 -124.78 REMARK 500 12 ARG A 37 81.67 -69.02 REMARK 500 12 LYS A 38 -66.07 -106.38 REMARK 500 12 PRO A 40 93.90 -69.70 REMARK 500 12 LYS A 47 44.17 -106.57 REMARK 500 12 ALA A 54 122.96 -175.07 REMARK 500 12 GLU A 59 151.25 -42.83 REMARK 500 12 SER A 63 -62.07 -94.81 REMARK 500 13 SER A 6 -62.28 -108.78 REMARK 500 13 ARG A 9 106.52 -160.50 REMARK 500 13 ILE A 12 -57.61 -124.15 REMARK 500 13 HIS A 13 44.63 35.92 REMARK 500 13 ARG A 17 48.31 -80.49 REMARK 500 13 CYS A 21 158.66 -46.04 REMARK 500 13 LYS A 38 -54.86 -121.35 REMARK 500 13 PRO A 40 99.81 -69.74 REMARK 500 13 GLU A 43 -38.83 -32.79 REMARK 500 13 ASP A 48 173.04 -57.49 REMARK 500 13 GLU A 62 -63.43 -127.64 REMARK 500 13 LYS A 66 77.94 -106.17 REMARK 500 13 THR A 67 117.90 -173.49 REMARK 500 13 SER A 68 91.50 -60.57 REMARK 500 13 PRO A 70 96.43 -69.79 REMARK 500 14 SER A 2 41.83 39.95 REMARK 500 14 HIS A 13 75.83 -114.97 REMARK 500 14 CYS A 21 151.46 -41.11 REMARK 500 14 LYS A 23 -72.80 -84.17 REMARK 500 14 PRO A 40 87.35 -69.73 REMARK 500 14 ARG A 46 -38.71 -34.34 REMARK 500 14 LYS A 47 47.89 -109.81 REMARK 500 14 SER A 49 100.49 -54.12 REMARK 500 14 GLU A 52 42.33 36.82 REMARK 500 14 ASN A 56 117.72 -174.95 REMARK 500 14 LYS A 57 42.43 34.94 REMARK 500 14 LYS A 66 118.12 -38.56 REMARK 500 15 CYS A 21 151.64 -35.62 REMARK 500 15 LYS A 23 -70.86 -76.03 REMARK 500 15 SER A 32 37.05 -93.12 REMARK 500 15 LEU A 34 47.79 38.20 REMARK 500 15 ARG A 37 103.24 -36.77 REMARK 500 15 THR A 39 137.34 -35.08 REMARK 500 15 PRO A 40 12.28 -69.80 REMARK 500 15 GLN A 51 40.81 35.36 REMARK 500 15 GLU A 52 44.49 -96.53 REMARK 500 15 ALA A 53 -48.16 -130.20 REMARK 500 15 LYS A 57 105.43 -43.85 REMARK 500 15 SER A 71 46.65 -102.88 REMARK 500 16 GLN A 10 110.85 -172.86 REMARK 500 16 SER A 18 127.83 -35.00 REMARK 500 16 CYS A 21 158.21 -39.51 REMARK 500 16 SER A 32 120.40 -34.20 REMARK 500 16 ARG A 36 50.05 36.68 REMARK 500 16 PRO A 40 12.84 -69.75 REMARK 500 16 LYS A 47 58.42 -105.98 REMARK 500 16 GLU A 52 41.15 -90.78 REMARK 500 16 ALA A 54 144.99 -35.11 REMARK 500 17 ASP A 16 64.95 -100.87 REMARK 500 17 CYS A 50 62.62 -112.35 REMARK 500 17 ASN A 56 144.53 -39.88 REMARK 500 17 GLU A 62 46.62 -81.61 REMARK 500 17 LYS A 65 46.46 -87.59 REMARK 500 17 PRO A 70 99.86 -69.75 REMARK 500 18 SER A 3 -44.13 -132.96 REMARK 500 18 GLN A 10 118.13 -168.07 REMARK 500 18 ILE A 12 155.58 -47.03 REMARK 500 18 SER A 35 98.50 -51.07 REMARK 500 18 PRO A 40 6.53 -69.69 REMARK 500 18 GLU A 59 42.46 72.72 REMARK 500 18 ASN A 61 108.49 -59.48 REMARK 500 18 GLU A 62 -49.86 -131.18 REMARK 500 18 PRO A 70 -176.75 -69.72 REMARK 500 19 SER A 2 118.24 -37.23 REMARK 500 19 SER A 6 135.25 -37.71 REMARK 500 19 CYS A 21 158.82 -47.87 REMARK 500 19 ARG A 31 108.23 -59.09 REMARK 500 19 ARG A 36 -60.21 -123.70 REMARK 500 19 PRO A 40 85.60 -69.80 REMARK 500 19 ASP A 48 118.70 -34.87 REMARK 500 19 GLN A 51 -42.50 -130.47 REMARK 500 19 ALA A 53 40.59 -83.00 REMARK 500 19 ASN A 56 118.61 -170.98 REMARK 500 19 ASN A 61 42.06 36.96 REMARK 500 20 GLN A 10 71.61 -101.66 REMARK 500 20 ILE A 12 142.08 -171.40 REMARK 500 20 LEU A 14 147.47 -171.74 REMARK 500 20 THR A 33 -69.35 -103.67 REMARK 500 20 SER A 35 -65.36 -103.89 REMARK 500 20 ARG A 36 146.07 -173.73 REMARK 500 20 THR A 39 127.68 -34.27 REMARK 500 20 ASP A 48 43.36 -84.87 REMARK 500 20 CYS A 50 52.64 -105.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 CYS A 24 SG 111.5 REMARK 620 3 CYS A 42 SG 117.9 93.7 REMARK 620 4 CYS A 45 SG 113.5 113.5 105.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001929.1 RELATED DB: TARGETDB DBREF 2CTU A 8 67 UNP Q8TF39 ZN483_HUMAN 379 438 SEQADV 2CTU GLY A 1 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU SER A 2 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU SER A 3 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU GLY A 4 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU SER A 5 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU SER A 6 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU GLY A 7 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU SER A 68 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU GLY A 69 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU PRO A 70 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU SER A 71 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU SER A 72 UNP Q8TF39 CLONING ARTIFACT SEQADV 2CTU GLY A 73 UNP Q8TF39 CLONING ARTIFACT SEQRES 1 A 73 GLY SER SER GLY SER SER GLY LYS ARG GLN LYS ILE HIS SEQRES 2 A 73 LEU GLY ASP ARG SER GLN LYS CYS SER LYS CYS GLY ILE SEQRES 3 A 73 ILE PHE ILE ARG ARG SER THR LEU SER ARG ARG LYS THR SEQRES 4 A 73 PRO MET CYS GLU LYS CYS ARG LYS ASP SER CYS GLN GLU SEQRES 5 A 73 ALA ALA LEU ASN LYS ASP GLU GLY ASN GLU SER GLY LYS SEQRES 6 A 73 LYS THR SER GLY PRO SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 CYS A 42 ASP A 48 1 7 SHEET 1 A 2 SER A 18 LYS A 20 0 SHEET 2 A 2 ILE A 27 ILE A 29 -1 O PHE A 28 N GLN A 19 LINK ZN ZN A 201 SG CYS A 21 1555 1555 2.34 LINK ZN ZN A 201 SG CYS A 24 1555 1555 2.33 LINK ZN ZN A 201 SG CYS A 42 1555 1555 2.33 LINK ZN ZN A 201 SG CYS A 45 1555 1555 2.33 SITE 1 AC1 4 CYS A 21 CYS A 24 CYS A 42 CYS A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20