HEADER RECEPTOR 19-APR-05 2BPD TITLE STRUCTURE OF MURINE DECTIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECTIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR BETA-GLUCAN RECOGNITION DOMAIN, RESIDUES 113- COMPND 5 244; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: RAW264.7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS RECEPTOR, DECTIN-1, BETA-GLUCAN, FUNGAL RECOGNITION, C-TYPE LECTIN- KEYWDS 2 LIKE DOMAIN, CTLD, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR J.BROWN,C.A.O'CALLAGHAN,A.S.J.MARSHALL,R.J.C.GILBERT,C.SIEBOLD, AUTHOR 2 S.GORDON,G.D.BROWN,E.Y.JONES REVDAT 9 25-MAR-20 2BPD 1 REMARK REVDAT 8 03-APR-19 2BPD 1 SOURCE REVDAT 7 12-JUL-17 2BPD 1 REVDAT 6 13-JUL-11 2BPD 1 VERSN REVDAT 5 24-FEB-09 2BPD 1 VERSN REVDAT 4 20-MAY-08 2BPD 1 VERSN REMARK REVDAT 3 05-JUN-07 2BPD 1 JRNL REVDAT 2 15-MAY-07 2BPD 1 JRNL REMARK REVDAT 1 30-AUG-06 2BPD 0 JRNL AUTH J.BROWN,C.A.O'CALLAGHAN,A.S.J.MARSHALL,R.J.C.GILBERT, JRNL AUTH 2 C.SIEBOLD,S.GORDON,G.D.BROWN,E.Y.JONES JRNL TITL STRUCTURE OF THE FUNGAL BETA-GLUCAN-BINDING IMMUNE RECEPTOR JRNL TITL 2 DECTIN-1: IMPLICATIONS FOR FUNCTION. JRNL REF PROTEIN SCI. V. 16 1042 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17473009 JRNL DOI 10.1110/PS.072791207 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 39882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1677 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2318 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.230 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2183 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2958 ; 1.336 ; 1.888 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.684 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;36.973 ;24.068 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;14.300 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.806 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 288 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1716 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1121 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1492 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 341 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 0.821 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2052 ; 1.273 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1038 ; 1.986 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 906 ; 2.793 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 117 A 243 4 REMARK 3 1 B 117 B 243 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1020 ; 0.43 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1020 ; 1.00 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4350 24.4070 37.8330 REMARK 3 T TENSOR REMARK 3 T11: -0.1918 T22: -0.1119 REMARK 3 T33: -0.1558 T12: 0.0150 REMARK 3 T13: 0.0261 T23: 0.0673 REMARK 3 L TENSOR REMARK 3 L11: 4.9987 L22: 1.3066 REMARK 3 L33: 1.8683 L12: 1.4938 REMARK 3 L13: -0.1992 L23: -0.3544 REMARK 3 S TENSOR REMARK 3 S11: 0.1200 S12: 0.1156 S13: 0.2964 REMARK 3 S21: 0.1370 S22: -0.0354 S23: 0.0677 REMARK 3 S31: -0.1194 S32: -0.0149 S33: -0.0846 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 116 B 244 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3480 7.5430 38.4520 REMARK 3 T TENSOR REMARK 3 T11: -0.1886 T22: -0.1461 REMARK 3 T33: -0.2148 T12: 0.0162 REMARK 3 T13: -0.0027 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.9079 L22: 1.9375 REMARK 3 L33: 1.9985 L12: 0.7186 REMARK 3 L13: 0.5056 L23: 0.4927 REMARK 3 S TENSOR REMARK 3 S11: 0.1761 S12: -0.1320 S13: -0.0833 REMARK 3 S21: 0.1673 S22: -0.1221 S23: 0.0231 REMARK 3 S31: 0.1559 S32: -0.0244 S33: -0.0540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290023691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41593 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CASPR, AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1K9J, 1FM5, 1HQ8, 1JA3, 1MPU, 1E87 REMARK 200 REMARK 200 REMARK: MOLECULAR REPLACEMENT USED THE CASPR WEBSERVER WITH 6 REMARK 200 STARTING MODELS. STRUCTURAL ALIGNMENT OF STARTING MODELS WAS REMARK 200 USED TO GENERATE HOMOLOGY MODELS AND POLY-ALA MODELS TO BE USED REMARK 200 IN THE MOLECULAR REPLACEMENT SEARCH. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DI-AMMONIUM HYDROGEN CITRATE, REMARK 280 20% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.94800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.47400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 103 REMARK 465 GLY A 104 REMARK 465 SER A 105 REMARK 465 SER A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 GLY A 113 REMARK 465 GLY A 114 REMARK 465 PHE A 115 REMARK 465 SER A 116 REMARK 465 LEU A 244 REMARK 465 MET B 103 REMARK 465 GLY B 104 REMARK 465 SER B 105 REMARK 465 SER B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 PHE B 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2070 O HOH A 2080 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 145 NE ARG A 145 CZ 0.105 REMARK 500 ARG A 145 CZ ARG A 145 NH1 0.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 122 -1.54 81.04 REMARK 500 ASN B 122 -3.29 82.46 REMARK 500 ALA B 152 -163.83 -122.33 REMARK 500 GLN B 212 -73.89 -132.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 145 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2097 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2098 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A2107 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B2083 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B2089 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B2102 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B2104 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH B2105 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH B2119 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B2158 DISTANCE = 5.82 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BPE RELATED DB: PDB REMARK 900 STRUCTURE OF MURINE DECTIN-1 REMARK 900 RELATED ID: 2BPH RELATED DB: PDB REMARK 900 STRUCTURE OF MURINE DECTIN-1 DBREF 2BPD A 103 112 PDB 2BPD 2BPD 103 112 DBREF 2BPD A 113 244 UNP Q6QLQ4 Q6QLQ4_MOUSE 113 244 DBREF 2BPD B 103 112 PDB 2BPD 2BPD 103 112 DBREF 2BPD B 113 244 UNP Q6QLQ4 Q6QLQ4_MOUSE 113 244 SEQRES 1 A 142 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY GLY PHE SEQRES 2 A 142 SER GLN SER CYS LEU PRO ASN TRP ILE MET HIS GLY LYS SEQRES 3 A 142 SER CYS TYR LEU PHE SER PHE SER GLY ASN SER TRP TYR SEQRES 4 A 142 GLY SER LYS ARG HIS CYS SER GLN LEU GLY ALA HIS LEU SEQRES 5 A 142 LEU LYS ILE ASP ASN SER LYS GLU PHE GLU PHE ILE GLU SEQRES 6 A 142 SER GLN THR SER SER HIS ARG ILE ASN ALA PHE TRP ILE SEQRES 7 A 142 GLY LEU SER ARG ASN GLN SER GLU GLY PRO TRP PHE TRP SEQRES 8 A 142 GLU ASP GLY SER ALA PHE PHE PRO ASN SER PHE GLN VAL SEQRES 9 A 142 ARG ASN ALA VAL PRO GLN GLU SER LEU LEU HIS ASN CYS SEQRES 10 A 142 VAL TRP ILE HIS GLY SER GLU VAL TYR ASN GLN ILE CYS SEQRES 11 A 142 ASN THR SER SER TYR SER ILE CYS GLU LYS GLU LEU SEQRES 1 B 142 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY GLY PHE SEQRES 2 B 142 SER GLN SER CYS LEU PRO ASN TRP ILE MET HIS GLY LYS SEQRES 3 B 142 SER CYS TYR LEU PHE SER PHE SER GLY ASN SER TRP TYR SEQRES 4 B 142 GLY SER LYS ARG HIS CYS SER GLN LEU GLY ALA HIS LEU SEQRES 5 B 142 LEU LYS ILE ASP ASN SER LYS GLU PHE GLU PHE ILE GLU SEQRES 6 B 142 SER GLN THR SER SER HIS ARG ILE ASN ALA PHE TRP ILE SEQRES 7 B 142 GLY LEU SER ARG ASN GLN SER GLU GLY PRO TRP PHE TRP SEQRES 8 B 142 GLU ASP GLY SER ALA PHE PHE PRO ASN SER PHE GLN VAL SEQRES 9 B 142 ARG ASN ALA VAL PRO GLN GLU SER LEU LEU HIS ASN CYS SEQRES 10 B 142 VAL TRP ILE HIS GLY SER GLU VAL TYR ASN GLN ILE CYS SEQRES 11 B 142 ASN THR SER SER TYR SER ILE CYS GLU LYS GLU LEU FORMUL 3 HOH *436(H2 O) HELIX 1 1 SER A 139 LEU A 150 1 12 HELIX 2 2 ASN A 159 SER A 171 1 13 HELIX 3 3 SER A 172 ARG A 174 5 3 HELIX 4 4 SER B 139 LEU B 150 1 12 HELIX 5 5 ASN B 159 SER B 171 1 13 HELIX 6 6 SER B 172 ARG B 174 5 3 SHEET 1 AA 4 ILE A 124 HIS A 126 0 SHEET 2 AA 4 SER A 129 ASN A 138 -1 O SER A 129 N HIS A 126 SHEET 3 AA 4 SER A 236 LYS A 242 -1 O SER A 236 N ASN A 138 SHEET 4 AA 4 HIS A 153 LEU A 155 -1 O HIS A 153 N GLU A 241 SHEET 1 AB 7 ILE A 124 HIS A 126 0 SHEET 2 AB 7 SER A 129 ASN A 138 -1 O SER A 129 N HIS A 126 SHEET 3 AB 7 SER A 236 LYS A 242 -1 O SER A 236 N ASN A 138 SHEET 4 AB 7 ASN A 176 ARG A 184 1 O ALA A 177 N TYR A 237 SHEET 5 AB 7 ASN A 218 GLY A 224 -1 O ASN A 218 N ARG A 184 SHEET 6 AB 7 GLU A 226 GLN A 230 -1 O GLU A 226 N HIS A 223 SHEET 7 AB 7 GLN A 205 ARG A 207 1 O GLN A 205 N VAL A 227 SHEET 1 BA 4 ILE B 124 HIS B 126 0 SHEET 2 BA 4 LYS B 128 ASN B 138 -1 O SER B 129 N HIS B 126 SHEET 3 BA 4 SER B 236 LEU B 244 -1 O SER B 236 N ASN B 138 SHEET 4 BA 4 HIS B 153 LEU B 155 -1 O HIS B 153 N GLU B 241 SHEET 1 BB 7 ILE B 124 HIS B 126 0 SHEET 2 BB 7 LYS B 128 ASN B 138 -1 O SER B 129 N HIS B 126 SHEET 3 BB 7 SER B 236 LEU B 244 -1 O SER B 236 N ASN B 138 SHEET 4 BB 7 ALA B 177 ARG B 184 1 O ALA B 177 N TYR B 237 SHEET 5 BB 7 ASN B 218 HIS B 223 -1 O ASN B 218 N ARG B 184 SHEET 6 BB 7 GLU B 226 GLN B 230 -1 O GLU B 226 N HIS B 223 SHEET 7 BB 7 GLN B 205 ARG B 207 1 O GLN B 205 N VAL B 227 SSBOND 1 CYS A 119 CYS A 130 1555 1555 2.01 SSBOND 2 CYS A 147 CYS A 240 1555 1555 2.06 SSBOND 3 CYS A 219 CYS A 232 1555 1555 2.08 SSBOND 4 CYS B 119 CYS B 130 1555 1555 2.03 SSBOND 5 CYS B 147 CYS B 240 1555 1555 2.11 SSBOND 6 CYS B 219 CYS B 232 1555 1555 2.08 CRYST1 57.104 57.104 73.422 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017512 0.010111 0.000000 0.00000 SCALE2 0.000000 0.020221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013620 0.00000 MTRIX1 1 -0.998870 0.020250 -0.043060 0.29626 1 MTRIX2 1 -0.025700 -0.991170 0.130050 27.30604 1 MTRIX3 1 -0.040050 0.131010 0.990570 -1.90795 1