HEADER PROTEIN SYNTHESIS INHIBITOR 27-DEC-94 1TCS TITLE CRYSTAL STRUCTURE OF TRICHOSANTHIN-NADPH COMPLEX AT 1.7 ANGSTROMS TITLE 2 RESOLUTION REVEALS ACTIVE-SITE ARCHITECTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRICHOSANTHIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.22; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOSANTHES KIRILOWII; SOURCE 3 ORGANISM_TAXID: 3677 KEYWDS TOXIN, PROTEIN SYNTHESIS INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.-P.XIONG,Z.-X.XIA,Y.WANG REVDAT 4 29-NOV-17 1TCS 1 HELIX REVDAT 3 24-FEB-09 1TCS 1 VERSN REVDAT 2 01-APR-03 1TCS 1 JRNL REVDAT 1 10-JUL-95 1TCS 0 JRNL AUTH J.P.XIONG,Z.X.XIA,Y.WANG JRNL TITL CRYSTAL STRUCTURE OF TRICHOSANTHIN-NADPH COMPLEX AT 1.7 A JRNL TITL 2 RESOLUTION REVEALS ACTIVE-SITE ARCHITECTURE. JRNL REF NAT.STRUCT.BIOL. V. 1 695 1994 JRNL REFN ISSN 1072-8368 JRNL PMID 7634073 JRNL DOI 10.1038/NSB1094-695 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.-X.XIA,L.ZHANG,Z.-M.ZHANG REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF TRICHOSANTHIN REFINED AT REMARK 1 TITL 2 2.7 ANGSTROMS RESOLUTION REMARK 1 REF CHIN.J.CHEM. V. 11 280 1993 REMARK 1 REFN ISSN 1001-604X REMARK 1 REFERENCE 2 REMARK 1 AUTH Z.-X.XIA,Z.-M.ZHANG,L.ZHANG REMARK 1 TITL THE REVISION OF THREE-DIMENSIONAL STRUCTURE OF TRICHOSANTHIN REMARK 1 TITL 2 AT 3 ANGSTROMS RESOLUTION REMARK 1 REF CHIN.J.CHEM. V. 9 563 1991 REMARK 1 REFN ISSN 1001-604X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROFFT REMARK 3 AUTHORS : KONNERT,HENDRICKSON,FINZEL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.036 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.057 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.020 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.259 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.190 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.233 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.222 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 5.800 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 19.100; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.413 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.128 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.792 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.931 ; 2.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.19500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.96500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.96500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.19500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 19 CB SER A 19 OG -0.088 REMARK 500 GLU A 28 CD GLU A 28 OE2 0.067 REMARK 500 GLU A 58 CD GLU A 58 OE1 -0.080 REMARK 500 GLY A 73 N GLY A 73 CA 0.108 REMARK 500 ARG A 113 CZ ARG A 113 NH2 0.079 REMARK 500 GLU A 189 CD GLU A 189 OE1 -0.075 REMARK 500 SER A 193 CA SER A 193 CB 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 CD - NE - CZ ANGL. DEV. = -8.6 DEGREES REMARK 500 SER A 13 N - CA - CB ANGL. DEV. = 9.7 DEGREES REMARK 500 TYR A 14 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 VAL A 16 CG1 - CB - CG2 ANGL. DEV. = 11.0 DEGREES REMARK 500 PHE A 17 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 PHE A 17 CG - CD1 - CE1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 22 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU A 28 CB - CG - CD ANGL. DEV. = 20.2 DEGREES REMARK 500 GLU A 28 CG - CD - OE1 ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG A 29 CD - NE - CZ ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TYR A 32 CG - CD2 - CE2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP A 33 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP A 33 OD1 - CG - OD2 ANGL. DEV. = 18.3 DEGREES REMARK 500 ASP A 33 CB - CG - OD1 ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG A 46 CD - NE - CZ ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG A 46 NH1 - CZ - NH2 ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 14.2 DEGREES REMARK 500 TYR A 47 CB - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR A 47 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR A 55 CB - CG - CD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 TYR A 55 CB - CG - CD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 57 OD1 - CG - OD2 ANGL. DEV. = 11.7 DEGREES REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 GLU A 58 CG - CD - OE2 ANGL. DEV. = -13.2 DEGREES REMARK 500 ILE A 64 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 ASP A 65 OD1 - CG - OD2 ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP A 65 CB - CG - OD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 VAL A 69 CG1 - CB - CG2 ANGL. DEV. = -14.4 DEGREES REMARK 500 TYR A 70 CG - CD1 - CE1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 TYR A 81 CB - CG - CD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 TYR A 81 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 81 CG - CD2 - CE2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PHE A 82 CB - CG - CD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 PHE A 82 CD1 - CE1 - CZ ANGL. DEV. = -7.3 DEGREES REMARK 500 GLU A 85 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 TYR A 94 CB - CG - CD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 PHE A 96 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 PHE A 96 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 MET A 100 CA - CB - CG ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG A 101 CD - NE - CZ ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 LYS A 102 CD - CE - NZ ANGL. DEV. = 21.2 DEGREES REMARK 500 TYR A 111 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 74 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 -165.03 -161.27 REMARK 500 TYR A 141 55.26 -109.57 REMARK 500 TYR A 142 116.71 -29.41 REMARK 500 THR A 158 -81.46 -123.74 REMARK 500 ASN A 205 38.28 -141.52 REMARK 500 ASN A 236 -68.11 -136.70 REMARK 500 MET A 246 -66.61 -130.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 113 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 106 10.30 REMARK 500 GLN A 170 11.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: S1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: S2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: S3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: S4 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 280 DBREF 1TCS A 1 247 UNP P09989 RIPT_TRIKI 24 270 SEQRES 1 A 247 ASP VAL SER PHE ARG LEU SER GLY ALA THR SER SER SER SEQRES 2 A 247 TYR GLY VAL PHE ILE SER ASN LEU ARG LYS ALA LEU PRO SEQRES 3 A 247 ASN GLU ARG LYS LEU TYR ASP ILE PRO LEU LEU ARG SER SEQRES 4 A 247 SER LEU PRO GLY SER GLN ARG TYR ALA LEU ILE HIS LEU SEQRES 5 A 247 THR ASN TYR ALA ASP GLU THR ILE SER VAL ALA ILE ASP SEQRES 6 A 247 VAL THR ASN VAL TYR ILE MET GLY TYR ARG ALA GLY ASP SEQRES 7 A 247 THR SER TYR PHE PHE ASN GLU ALA SER ALA THR GLU ALA SEQRES 8 A 247 ALA LYS TYR VAL PHE LYS ASP ALA MET ARG LYS VAL THR SEQRES 9 A 247 LEU PRO TYR SER GLY ASN TYR GLU ARG LEU GLN THR ALA SEQRES 10 A 247 ALA GLY LYS ILE ARG GLU ASN ILE PRO LEU GLY LEU PRO SEQRES 11 A 247 ALA LEU ASP SER ALA ILE THR THR LEU PHE TYR TYR ASN SEQRES 12 A 247 ALA ASN SER ALA ALA SER ALA LEU MET VAL LEU ILE GLN SEQRES 13 A 247 SER THR SER GLU ALA ALA ARG TYR LYS PHE ILE GLU GLN SEQRES 14 A 247 GLN ILE GLY LYS ARG VAL ASP LYS THR PHE LEU PRO SER SEQRES 15 A 247 LEU ALA ILE ILE SER LEU GLU ASN SER TRP SER ALA LEU SEQRES 16 A 247 SER LYS GLN ILE GLN ILE ALA SER THR ASN ASN GLY GLN SEQRES 17 A 247 PHE GLU SER PRO VAL VAL LEU ILE ASN ALA GLN ASN GLN SEQRES 18 A 247 ARG VAL THR ILE THR ASN VAL ASP ALA GLY VAL VAL THR SEQRES 19 A 247 SER ASN ILE ALA LEU LEU LEU ASN ARG ASN ASN MET ALA HET NDP A 280 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 HOH *145(H2 O) HELIX 1 A1 THR A 10 ALA A 24 1 15 HELIX 2 A2 GLU A 85 VAL A 95 1E85-A88 IS A 3/10 HELIX 11 HELIX 3 A3 ASN A 110 GLY A 119 1 10 HELIX 4 A4 GLY A 128 TYR A 142 1 15 HELIX 5 A5 ALA A 147 TYR A 164 12 H-BONDS BREAK IN Q156-A161 18 HELIX 6 A6 TYR A 164 ARG A 174 1I171-R174 IS A 3/10 HELIX 11 HELIX 7 A7 SER A 182 SER A 203 1 22 HELIX 8 A8 ALA A 230 ASN A 236 12 H-BONDS BREAK IN E189-A194 7 HELIX 9 A9 PRO A 42 ARG A 46 5 5 HELIX 10 A10 ILE A 121 ILE A 125 5 5 SHEET 1 B1 6 VAL A 2 LEU A 6 0 SHEET 2 B1 6 ARG A 46 ASN A 54 1 N HIS A 51 O VAL A 2 SHEET 3 B1 6 ASP A 57 VAL A 66 -1 N ASP A 57 O ASN A 54 SHEET 4 B1 6 VAL A 69 ALA A 76 -1 N VAL A 69 O ASP A 65 SHEET 5 B1 6 ASP A 78 ASN A 84 -1 N THR A 79 O ALA A 76 SHEET 6 B1 6 MET A 100 TYR A 107 1 N MET A 100 O ASP A 78 SHEET 1 B2 2 GLU A 28 LEU A 31 0 SHEET 2 B2 2 ILE A 34 LEU A 36 -1 N ILE A 34 O LEU A 31 SHEET 1 B3 2 VAL A 213 ASN A 217 0 SHEET 2 B3 2 ASN A 220 ILE A 225 -1 N ILE A 225 O VAL A 213 SITE 1 S1 1 ARG A 163 SITE 1 S2 1 GLU A 160 SITE 1 S3 1 TYR A 70 SITE 1 S4 1 TYR A 111 SITE 1 AC1 26 VAL A 69 TYR A 70 ILE A 71 GLY A 109 SITE 2 AC1 26 TYR A 111 ILE A 155 SER A 159 GLU A 160 SITE 3 AC1 26 ARG A 163 GLU A 189 ASN A 190 SER A 191 SITE 4 AC1 26 TRP A 192 SER A 193 ALA A 194 LYS A 197 SITE 5 AC1 26 GLN A 198 SER A 211 ASN A 217 ALA A 218 SITE 6 AC1 26 GLN A 219 HOH A 610 HOH A 612 HOH A 613 SITE 7 AC1 26 HOH A 618 HOH A 622 CRYST1 38.390 76.810 79.930 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012511 0.00000