HEADER TRANSFERASE 01-MAY-03 1P7C TITLE CRYSTAL STRUCTURE OF HSV1-TK COMPLEXED WITH TP5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERPES SIMPLEX VIRUS (TYPE 1 / STRAIN SOURCE 3 17); SOURCE 4 ORGANISM_TAXID: 10299; SOURCE 5 STRAIN: 17; SOURCE 6 GENE: TK OR UL23; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-RB KEYWDS P-LOOP, LID, BISUBSTRATE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GARDBERG,L.SHUVALOVA,C.MONNERJAHN,M.KONRAD,A.LAVIE REVDAT 2 24-FEB-09 1P7C 1 VERSN REVDAT 1 04-NOV-03 1P7C 0 JRNL AUTH A.GARDBERG,L.SHUVALOVA,C.MONNERJAHN,M.KONRAD, JRNL AUTH 2 A.LAVIE JRNL TITL STRUCTURAL BASIS FOR THE DUAL THYMIDINE AND JRNL TITL 2 THYMIDYLATE KINASE ACTIVITY OF HERPES THYMIDINE JRNL TITL 3 KINASES. JRNL REF STRUCTURE V. 11 1265 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 14527394 JRNL DOI 10.1016/J.STR.2003.09.003 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 37137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4142 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2756 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 283 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : 1.82000 REMARK 3 B33 (A**2) : -1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.288 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.084 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4842 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6629 ; 1.429 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 5.624 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 773 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3638 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2403 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 339 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.244 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.338 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3086 ; 0.703 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4951 ; 1.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1756 ; 1.837 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1678 ; 3.005 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P7C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 2000 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1VTK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, TRIS, TP5A, PH REMARK 280 6.75, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.60950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.92350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.60950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.92350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.20000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.60950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.92350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.60950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.92350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 668 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 34 REMARK 465 GLN A 35 REMARK 465 GLU A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 GLU A 39 REMARK 465 VAL A 40 REMARK 465 ARG A 41 REMARK 465 PRO A 42 REMARK 465 GLU A 43 REMARK 465 GLN A 44 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ARG A 75 REMARK 465 ASP A 76 REMARK 465 MET A 85 REMARK 465 THR A 86 REMARK 465 TYR A 87 REMARK 465 TRP A 88 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 HIS A 151 REMARK 465 ALA A 152 REMARK 465 THR A 265 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 MET A 372 REMARK 465 GLY A 373 REMARK 465 GLU A 374 REMARK 465 ALA A 375 REMARK 465 ASN A 376 REMARK 465 GLN B 34 REMARK 465 GLN B 35 REMARK 465 GLU B 36 REMARK 465 ALA B 37 REMARK 465 THR B 38 REMARK 465 GLU B 39 REMARK 465 VAL B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLU B 43 REMARK 465 GLN B 44 REMARK 465 LYS B 45 REMARK 465 THR B 265 REMARK 465 ALA B 266 REMARK 465 VAL B 267 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 PRO B 274 REMARK 465 GLN B 275 REMARK 465 SER B 276 REMARK 465 ASN B 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 72 CG CD1 CD2 REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 90 CG1 CG2 REMARK 470 LEU A 91 CG CD1 CD2 REMARK 470 SER A 94 OG REMARK 470 GLN A 221 CG CD OE1 NE2 REMARK 470 CYS A 251 SG REMARK 470 ARG A 366 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 SER B 74 OG REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 SER B 149 OG REMARK 470 SER B 150 OG REMARK 470 HIS B 151 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 221 CG CD OE1 NE2 REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 SER B 263 OG REMARK 470 ASN B 376 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER B 149 O MET B 347 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 653 O HOH B 653 3555 1.59 REMARK 500 O HOH A 615 O HOH A 615 4566 1.84 REMARK 500 NH2 ARG A 320 NH2 ARG A 320 4566 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 55 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 116 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 303 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 116 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 211 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 215 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 286 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 303 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 318 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 318 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -154.54 -134.26 REMARK 500 VAL A 90 -55.53 64.81 REMARK 500 LEU A 91 40.61 -161.26 REMARK 500 SER A 94 53.74 -69.12 REMARK 500 GLU A 95 92.95 32.58 REMARK 500 ALA A 147 -89.48 -95.06 REMARK 500 ARG A 163 156.29 82.48 REMARK 500 LEU A 170 -58.55 -146.39 REMARK 500 ARG A 293 21.80 -79.70 REMARK 500 LEU B 72 1.22 -58.60 REMARK 500 SER B 74 -46.31 101.44 REMARK 500 ARG B 75 -43.01 53.76 REMARK 500 VAL B 90 -54.68 -134.06 REMARK 500 GLU B 146 126.56 -32.55 REMARK 500 SER B 149 -75.91 42.43 REMARK 500 SER B 150 97.24 -23.86 REMARK 500 PRO B 153 -163.71 -65.57 REMARK 500 ARG B 163 148.94 84.14 REMARK 500 LEU B 170 -60.44 -142.37 REMARK 500 SER B 263 -80.90 -133.53 REMARK 500 ARG B 293 75.20 -104.39 REMARK 500 PRO B 300 67.02 -62.99 REMARK 500 ASN B 301 5.45 178.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 662 DISTANCE = 5.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THM B 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T5A A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P75 RELATED DB: PDB REMARK 900 EHV4-TK COMPLEXED WITH SAME LIGAND REMARK 900 RELATED ID: 1P72 RELATED DB: PDB REMARK 900 EHV4-TK COMPLEXED WITH THY AND ADP REMARK 900 RELATED ID: 1P6X RELATED DB: PDB REMARK 900 EHV4-TK COMPLEXED WITH THY AND SO4 REMARK 900 RELATED ID: 1P73 RELATED DB: PDB REMARK 900 EHV4-TK COMPLEXED WITH TP4A DBREF 1P7C A 34 376 UNP P03176 KITH_HHV11 34 376 DBREF 1P7C B 34 376 UNP P03176 KITH_HHV11 34 376 SEQRES 1 A 343 GLN GLN GLU ALA THR GLU VAL ARG PRO GLU GLN LYS MET SEQRES 2 A 343 PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS GLY SEQRES 3 A 343 MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA LEU SEQRES 4 A 343 GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO MET SEQRES 5 A 343 THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE ALA SEQRES 6 A 343 ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY GLU SEQRES 7 A 343 ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER ALA SEQRES 8 A 343 GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP ALA SEQRES 9 A 343 VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SER SEQRES 10 A 343 HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP ARG SEQRES 11 A 343 HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA ARG SEQRES 12 A 343 TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU ALA SEQRES 13 A 343 PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR ASN SEQRES 14 A 343 ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE ASP SEQRES 15 A 343 ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU ASP SEQRES 16 A 343 LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY LEU SEQRES 17 A 343 LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SER SEQRES 18 A 343 TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA VAL SEQRES 19 A 343 PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY PRO SEQRES 20 A 343 ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE ARG SEQRES 21 A 343 ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR ASN SEQRES 22 A 343 VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG LEU SEQRES 23 A 343 ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SER SEQRES 24 A 343 PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SER SEQRES 25 A 343 GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER ILE SEQRES 26 A 343 PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG GLU SEQRES 27 A 343 MET GLY GLU ALA ASN SEQRES 1 B 343 GLN GLN GLU ALA THR GLU VAL ARG PRO GLU GLN LYS MET SEQRES 2 B 343 PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS GLY SEQRES 3 B 343 MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA LEU SEQRES 4 B 343 GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO MET SEQRES 5 B 343 THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE ALA SEQRES 6 B 343 ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY GLU SEQRES 7 B 343 ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER ALA SEQRES 8 B 343 GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP ALA SEQRES 9 B 343 VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SER SEQRES 10 B 343 HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP ARG SEQRES 11 B 343 HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA ARG SEQRES 12 B 343 TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU ALA SEQRES 13 B 343 PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR ASN SEQRES 14 B 343 ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE ASP SEQRES 15 B 343 ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU ASP SEQRES 16 B 343 LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY LEU SEQRES 17 B 343 LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SER SEQRES 18 B 343 TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA VAL SEQRES 19 B 343 PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY PRO SEQRES 20 B 343 ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE ARG SEQRES 21 B 343 ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR ASN SEQRES 22 B 343 VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG LEU SEQRES 23 B 343 ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SER SEQRES 24 B 343 PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SER SEQRES 25 B 343 GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER ILE SEQRES 26 B 343 PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG GLU SEQRES 27 B 343 MET GLY GLU ALA ASN HET SO4 B 502 5 HET THM B 501 17 HET T5A A 503 55 HETNAM SO4 SULFATE ION HETNAM THM THYMIDINE HETNAM T5A P1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE FORMUL 3 SO4 O4 S 2- FORMUL 4 THM C10 H14 N2 O5 FORMUL 5 T5A C20 H30 N7 O23 P5 FORMUL 6 HOH *340(H2 O) HELIX 1 1 GLY A 61 ALA A 71 1 11 HELIX 2 2 GLU A 95 GLN A 109 1 15 HELIX 3 3 SER A 113 ALA A 140 1 28 HELIX 4 4 PRO A 165 LEU A 170 1 6 HELIX 5 5 LEU A 170 MET A 179 1 10 HELIX 6 6 THR A 183 LEU A 193 1 11 HELIX 7 7 PRO A 209 ARG A 220 1 12 HELIX 8 8 ASP A 228 CYS A 251 1 24 HELIX 9 9 SER A 254 TRP A 259 1 6 HELIX 10 10 GLY A 260 SER A 263 5 4 HELIX 11 11 HIS A 283 ARG A 293 5 11 HELIX 12 12 ALA A 294 LEU A 298 5 5 HELIX 13 13 TYR A 305 ARG A 320 1 16 HELIX 14 14 SER A 332 THR A 344 1 13 HELIX 15 15 SER A 345 MET A 347 5 3 HELIX 16 16 GLY A 356 GLU A 371 1 16 HELIX 17 17 GLY B 61 LEU B 72 1 12 HELIX 18 18 PRO B 84 VAL B 90 1 7 HELIX 19 19 GLU B 95 GLN B 109 1 15 HELIX 20 20 SER B 113 ALA B 140 1 28 HELIX 21 21 PRO B 165 LEU B 170 1 6 HELIX 22 22 LEU B 170 MET B 179 1 10 HELIX 23 23 THR B 183 LEU B 193 1 11 HELIX 24 24 PRO B 209 ARG B 220 1 12 HELIX 25 25 ASP B 228 CYS B 251 1 24 HELIX 26 26 SER B 254 TRP B 259 1 6 HELIX 27 27 GLY B 260 LEU B 262 5 3 HELIX 28 28 HIS B 283 ARG B 293 5 11 HELIX 29 29 ALA B 294 LEU B 298 5 5 HELIX 30 30 TYR B 305 ARG B 320 1 16 HELIX 31 31 SER B 332 GLY B 346 1 15 HELIX 32 32 GLY B 356 GLY B 373 1 18 SHEET 1 A 5 HIS A 323 ASP A 328 0 SHEET 2 A 5 ASN A 202 ALA A 207 1 N LEU A 205 O LEU A 327 SHEET 3 A 5 THR A 48 ILE A 54 1 N TYR A 53 O ASN A 202 SHEET 4 A 5 LEU A 157 ASP A 162 1 O PHE A 161 N VAL A 52 SHEET 5 A 5 ILE A 78 VAL A 81 1 N VAL A 81 O ILE A 160 SHEET 1 B 4 HIS A 323 ASP A 328 0 SHEET 2 B 4 ASN A 202 ALA A 207 1 N LEU A 205 O LEU A 327 SHEET 3 B 4 THR A 48 ILE A 54 1 N TYR A 53 O ASN A 202 SHEET 4 B 4 THR A 350 VAL A 352 -1 O THR A 350 N LEU A 49 SHEET 1 C 5 HIS B 323 ASP B 328 0 SHEET 2 C 5 ASN B 202 ALA B 207 1 N LEU B 205 O PHE B 325 SHEET 3 C 5 THR B 48 ASP B 55 1 N TYR B 53 O VAL B 204 SHEET 4 C 5 LEU B 157 ASP B 162 1 O PHE B 161 N VAL B 52 SHEET 5 C 5 ILE B 78 VAL B 81 1 N VAL B 81 O ASP B 162 SHEET 1 D 4 HIS B 323 ASP B 328 0 SHEET 2 D 4 ASN B 202 ALA B 207 1 N LEU B 205 O PHE B 325 SHEET 3 D 4 THR B 48 ASP B 55 1 N TYR B 53 O VAL B 204 SHEET 4 D 4 THR B 350 VAL B 352 -1 O THR B 350 N LEU B 49 SITE 1 AC1 9 HIS B 58 GLY B 59 MET B 60 GLY B 61 SITE 2 AC1 9 LYS B 62 THR B 63 ARG B 220 HOH B 519 SITE 3 AC1 9 HOH B 540 SITE 1 AC2 13 HIS B 58 GLU B 83 TRP B 88 TYR B 101 SITE 2 AC2 13 GLN B 125 MET B 128 ARG B 163 ALA B 168 SITE 3 AC2 13 TYR B 172 GLU B 225 HOH B 532 HOH B 575 SITE 4 AC2 13 HOH B 590 SITE 1 AC3 33 HIS A 58 GLY A 59 MET A 60 GLY A 61 SITE 2 AC3 33 LYS A 62 THR A 63 THR A 64 GLU A 83 SITE 3 AC3 33 ILE A 97 ILE A 100 TYR A 101 GLN A 125 SITE 4 AC3 33 MET A 128 TYR A 132 ARG A 163 ALA A 168 SITE 5 AC3 33 TYR A 172 ARG A 216 LYS A 219 ARG A 220 SITE 6 AC3 33 ARG A 222 GLU A 225 GLN A 331 SER A 332 SITE 7 AC3 33 PRO A 333 CYS A 336 HOH A 593 HOH A 608 SITE 8 AC3 33 HOH A 637 HOH A 642 HOH A 660 GLN B 221 SITE 9 AC3 33 ASN B 376 CRYST1 113.219 117.847 108.400 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009225 0.00000