HEADER TRANSFORMING PROTEIN 20-SEP-95 1MIL TITLE TRANSFORMING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHC ADAPTOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHOSPHOTYROSINE RECOGNITION DOMAIN SH2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: T7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: T7; SOURCE 10 EXPRESSION_SYSTEM_GENE: T7 KEYWDS SH2 DOMAIN, PHOSPHORYLATION, COLLAGEN, GROWTH REGULATION, KEYWDS 2 TRANSFORMING PROTEIN, ALTERNATIVE INITIATION EXPDTA X-RAY DIFFRACTION AUTHOR V.MIKOL REVDAT 2 24-FEB-09 1MIL 1 VERSN REVDAT 1 08-NOV-96 1MIL 0 JRNL AUTH V.MIKOL,G.BAUMANN,M.G.ZURINI,U.HOMMEL JRNL TITL CRYSTAL STRUCTURE OF THE SH2 DOMAIN FROM THE JRNL TITL 2 ADAPTOR PROTEIN SHC: A MODEL FOR PEPTIDE BINDING JRNL TITL 3 BASED ON X-RAY AND NMR DATA. JRNL REF J.MOL.BIOL. V. 254 86 1995 JRNL REFN ISSN 0022-2836 JRNL PMID 7473762 JRNL DOI 10.1006/JMBI.1995.0601 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.MIKOL,D.DUC REMARK 1 TITL CRYSTALLIZATION OF THE COMPLEX BETWEEN CYCLOPHILIN REMARK 1 TITL 2 A AND CYCLOSPORIN DERIVATIVES: THE USE OF REMARK 1 TITL 3 CROSS-SEEDING REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 50 543 1994 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH V.MIKOL,J.KALLEN,G.PFLUGL,M.D.WALKINSHAW REMARK 1 TITL X-RAY STRUCTURE OF A MONOMERIC CYCLOPHILIN REMARK 1 TITL 2 A-CYCLOSPORIN A CRYSTAL COMPLEX AT 2.1 A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 234 1119 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH G.PELICCI,L.LANFRANCONE,F.GRIGNANI,J.MCGLADE, REMARK 1 AUTH 2 F.CAVALLO,G.FORNI,I.NICOLETTI,F.GRIGNANI,T.PAWSON, REMARK 1 AUTH 3 P.G.PELICCI REMARK 1 TITL A NOVEL TRANSFORMING PROTEIN (SHC) WITH AN SH2 REMARK 1 TITL 2 DOMAIN IS IMPLICATED IN MITOGENIC SIGNAL REMARK 1 TITL 3 TRANSDUCTION REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 70 93 1992 REMARK 1 REFN ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 2943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.87 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MIL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.77500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.77500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 RESIDUE ARG 16 OF SHC ADOPTS ALTERNATE CONFORMATIONS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CB CG CD OE1 NE2 REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 60 CB CG CD OE1 OE2 REMARK 470 VAL A 62 CB CG1 CG2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 58.64 -68.50 REMARK 500 GLN A 3 -146.96 175.20 REMARK 500 SER A 34 122.58 -17.31 REMARK 500 THR A 37 78.28 -162.56 REMARK 500 PRO A 38 130.01 -15.88 REMARK 500 GLN A 40 -159.25 -101.45 REMARK 500 GLU A 60 68.23 -155.15 REMARK 500 VAL A 62 -105.23 -100.37 REMARK 500 VAL A 63 120.53 171.24 REMARK 500 ASP A 67 11.16 -167.57 REMARK 500 HIS A 84 33.66 73.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 110 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH A 114 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 132 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 159 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A 166 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A 168 DISTANCE = 5.70 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 RESIDUES 1 AND 2 CORRESPOND TO RESIDUES OF THE T7 GENE REMARK 999 LEADER SEQUENCE REQUIRED FOR EXPRESSION AND RESIDUES REMARK 999 3 - 104 CORRESPOND TO RESIDUES 372 - 473 IN THE FULL REMARK 999 LENGTH PROTEIN. DBREF 1MIL A 3 104 UNP P29353 SHC1_HUMAN 482 583 SEQRES 1 A 104 GLY SER GLN LEU ARG GLY GLU PRO TRP PHE HIS GLY LYS SEQRES 2 A 104 LEU SER ARG ARG GLU ALA GLU ALA LEU LEU GLN LEU ASN SEQRES 3 A 104 GLY ASP PHE LEU VAL ARG GLU SER THR THR THR PRO GLY SEQRES 4 A 104 GLN TYR VAL LEU THR GLY LEU GLN SER GLY GLN PRO LYS SEQRES 5 A 104 HIS LEU LEU LEU VAL ASP PRO GLU GLY VAL VAL ARG THR SEQRES 6 A 104 LYS ASP HIS ARG PHE GLU SER VAL SER HIS LEU ILE SER SEQRES 7 A 104 TYR HIS MET ASP ASN HIS LEU PRO ILE ILE SER ALA GLY SEQRES 8 A 104 SER GLU LEU CYS LEU GLN GLN PRO VAL GLU ARG LYS LEU FORMUL 2 HOH *85(H2 O) HELIX 1 1 ARG A 16 GLU A 20 1 5 HELIX 2 2 VAL A 73 ASN A 83 1 11 SHEET 1 A 5 PHE A 29 SER A 34 0 SHEET 2 A 5 TYR A 41 LEU A 46 -1 N THR A 44 O LEU A 30 SHEET 3 A 5 GLN A 50 LEU A 56 -1 N LEU A 56 O TYR A 41 SHEET 4 A 5 VAL A 63 ARG A 64 -1 SHEET 5 A 5 ARG A 69 PHE A 70 -1 CRYST1 26.370 41.550 97.540 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.037922 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010252 0.00000