HEADER CELL SURFACE PROTEIN 08-MAY-97 1LRE TITLE RECEPTOR ASSOCIATED PROTEIN (RAP) DOMAIN 1, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, DOMAIN 1, RESIDUES 17 - 97; COMPND 5 SYNONYM: RAP, LOW DENSITY LIPOPROTEIN RECEPTOR RELATED PROTEIN, COMPND 6 ALPHA=2=MACROGLOBULIN RECEPTOR ASSOCIATED PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT=7=H=6=UB KEYWDS ALPHA2-MACROGLOBULIN RECEPTOR ASSOCIATED PROTEIN, LOW DENSITY KEYWDS 2 LIPOPROTEIN RECEPTOR FAMILY ASSOCIATED PROTEIN, LDLR FAMILY KEYWDS 3 ASSOCIATED PROTEIN, HELIX BUNDLE, CELL SURFACE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.R.NIELSEN,F.M.POULSEN REVDAT 3 23-FEB-22 1LRE 1 REMARK REVDAT 2 24-FEB-09 1LRE 1 VERSN REVDAT 1 20-AUG-97 1LRE 0 JRNL AUTH P.R.NIELSEN,L.ELLGAARD,M.ETZERODT,H.C.THOGERSEN,F.M.POULSEN JRNL TITL THE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF JRNL TITL 2 ALPHA2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 94 7521 1997 JRNL REFN ISSN 0027-8424 JRNL PMID 9207124 JRNL DOI 10.1073/PNAS.94.14.7521 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.R.NIELSEN,L.ELLGAARD,P.H.JENSEN,H.C.THOEGERSEN,F.M.POULSEN REMARK 1 TITL ALPHA2-MACROGLOBULIN RECEPTOR ASSOCIATED PROTEINS CONSIST OF REMARK 1 TITL 2 THREE DOMAINS WITH SIMILAR STRUCTURAL MOTIFS. THE 1H, 15N, REMARK 1 TITL 3 AND 13C CHEMICAL SHIFT ASSIGNMENTS AND SECONDARY STRUCTURE REMARK 1 TITL 4 OF THE TRUNCATED N-TERMINAL DOMAIN OF HUMAN RAP REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH L.ELLGAARD,T.L.HOLTET,P.R.NIELSEN,M.ETZERODT,J.GLIEMANN, REMARK 1 AUTH 2 H.C.THOGERSEN REMARK 1 TITL DISSECTION OF THE DOMAIN ARCHITECTURE OF THE REMARK 1 TITL 2 ALPHA2MACROGLOBULIN-RECEPTOR-ASSOCIATED PROTEIN REMARK 1 REF EUR.J.BIOCHEM. V. 244 544 1997 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LRE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174805. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : DG, MD REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 19 -33.02 -38.54 REMARK 500 1 LEU A 37 159.58 -46.42 REMARK 500 1 LEU A 62 -73.09 -56.72 REMARK 500 1 ASP A 68 40.00 -82.71 REMARK 500 1 ASP A 91 46.25 -162.06 REMARK 500 2 GLU A 69 -33.87 -36.49 REMARK 500 2 LYS A 94 -71.98 -165.14 REMARK 500 2 ASP A 95 145.30 62.53 REMARK 500 2 ALA A 96 89.11 40.98 REMARK 500 3 LYS A 94 25.14 -166.96 REMARK 500 4 LEU A 28 -76.37 -61.01 REMARK 500 4 LEU A 62 -74.54 -56.81 REMARK 500 4 LYS A 93 39.18 175.90 REMARK 500 4 LYS A 94 34.78 -178.42 REMARK 500 4 ASP A 95 49.60 -97.64 REMARK 500 4 ALA A 96 -81.55 -125.13 REMARK 500 5 LEU A 37 154.43 -48.66 REMARK 500 5 LEU A 62 -74.12 -54.03 REMARK 500 5 LYS A 94 -108.61 -169.47 REMARK 500 5 ASP A 95 167.68 57.70 REMARK 500 5 ALA A 96 -36.55 79.44 REMARK 500 6 GLU A 18 131.23 59.52 REMARK 500 6 PHE A 20 -168.42 -111.84 REMARK 500 6 LEU A 28 -73.87 -62.28 REMARK 500 6 HIS A 36 35.95 34.35 REMARK 500 6 LEU A 62 -70.49 -53.69 REMARK 500 6 LYS A 93 158.61 59.25 REMARK 500 6 LYS A 94 -71.21 -156.43 REMARK 500 6 ASP A 95 86.82 58.84 REMARK 500 7 GLU A 18 137.59 60.40 REMARK 500 7 LEU A 28 -75.59 -64.40 REMARK 500 7 LEU A 37 166.72 -43.92 REMARK 500 7 LYS A 63 -71.20 -51.93 REMARK 500 7 LEU A 64 -29.30 -37.07 REMARK 500 7 LYS A 94 39.01 -168.05 REMARK 500 8 LEU A 37 159.80 -46.22 REMARK 500 8 LEU A 64 -32.55 -39.31 REMARK 500 8 ASP A 91 36.65 -173.02 REMARK 500 8 LYS A 94 -114.55 -167.53 REMARK 500 8 ASP A 95 -141.63 54.22 REMARK 500 8 ALA A 96 -66.57 -166.84 REMARK 500 9 LEU A 37 162.61 -43.28 REMARK 500 9 LYS A 94 -32.07 -177.12 REMARK 500 10 LEU A 37 168.89 -45.89 REMARK 500 10 GLU A 69 -35.81 -35.33 REMARK 500 10 ASP A 91 57.58 -147.63 REMARK 500 10 LYS A 93 72.69 45.43 REMARK 500 10 LYS A 94 -22.37 166.32 REMARK 500 10 ASP A 95 172.38 -44.75 REMARK 500 10 ALA A 96 100.21 61.74 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 21 0.31 SIDE CHAIN REMARK 500 1 ARG A 34 0.13 SIDE CHAIN REMARK 500 1 ARG A 41 0.29 SIDE CHAIN REMARK 500 1 ARG A 54 0.17 SIDE CHAIN REMARK 500 1 ARG A 76 0.32 SIDE CHAIN REMARK 500 1 ARG A 79 0.30 SIDE CHAIN REMARK 500 1 ARG A 97 0.31 SIDE CHAIN REMARK 500 2 ARG A 21 0.32 SIDE CHAIN REMARK 500 2 ARG A 34 0.20 SIDE CHAIN REMARK 500 2 ARG A 41 0.21 SIDE CHAIN REMARK 500 2 ARG A 54 0.21 SIDE CHAIN REMARK 500 2 ARG A 76 0.09 SIDE CHAIN REMARK 500 2 ARG A 79 0.32 SIDE CHAIN REMARK 500 2 ARG A 97 0.17 SIDE CHAIN REMARK 500 3 ARG A 21 0.32 SIDE CHAIN REMARK 500 3 ARG A 34 0.24 SIDE CHAIN REMARK 500 3 ARG A 41 0.31 SIDE CHAIN REMARK 500 3 ARG A 54 0.26 SIDE CHAIN REMARK 500 3 ARG A 76 0.31 SIDE CHAIN REMARK 500 3 ARG A 79 0.20 SIDE CHAIN REMARK 500 3 ARG A 97 0.30 SIDE CHAIN REMARK 500 4 ARG A 21 0.30 SIDE CHAIN REMARK 500 4 ARG A 34 0.30 SIDE CHAIN REMARK 500 4 ARG A 41 0.29 SIDE CHAIN REMARK 500 4 ARG A 54 0.21 SIDE CHAIN REMARK 500 4 ARG A 76 0.30 SIDE CHAIN REMARK 500 4 ARG A 79 0.18 SIDE CHAIN REMARK 500 4 ARG A 97 0.29 SIDE CHAIN REMARK 500 5 ARG A 21 0.28 SIDE CHAIN REMARK 500 5 ARG A 34 0.32 SIDE CHAIN REMARK 500 5 ARG A 41 0.31 SIDE CHAIN REMARK 500 5 ARG A 76 0.14 SIDE CHAIN REMARK 500 5 ARG A 79 0.28 SIDE CHAIN REMARK 500 5 ARG A 97 0.32 SIDE CHAIN REMARK 500 6 ARG A 21 0.30 SIDE CHAIN REMARK 500 6 ARG A 34 0.31 SIDE CHAIN REMARK 500 6 ARG A 41 0.32 SIDE CHAIN REMARK 500 6 ARG A 54 0.17 SIDE CHAIN REMARK 500 6 ARG A 76 0.12 SIDE CHAIN REMARK 500 6 ARG A 79 0.25 SIDE CHAIN REMARK 500 6 ARG A 97 0.32 SIDE CHAIN REMARK 500 7 ARG A 21 0.28 SIDE CHAIN REMARK 500 7 ARG A 34 0.32 SIDE CHAIN REMARK 500 7 ARG A 41 0.20 SIDE CHAIN REMARK 500 7 ARG A 54 0.29 SIDE CHAIN REMARK 500 7 ARG A 76 0.17 SIDE CHAIN REMARK 500 7 ARG A 79 0.32 SIDE CHAIN REMARK 500 7 ARG A 97 0.29 SIDE CHAIN REMARK 500 8 ARG A 21 0.31 SIDE CHAIN REMARK 500 8 ARG A 34 0.27 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 135 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1LRE A 17 97 UNP P30533 AMRP_HUMAN 51 131 SEQRES 1 A 81 GLY GLU GLU PHE ARG MET GLU LYS LEU ASN GLN LEU TRP SEQRES 2 A 81 GLU LYS ALA GLN ARG LEU HIS LEU PRO PRO VAL ARG LEU SEQRES 3 A 81 ALA GLU LEU HIS ALA ASP LEU LYS ILE GLN GLU ARG ASP SEQRES 4 A 81 GLU LEU ALA TRP LYS LYS LEU LYS LEU ASP GLY LEU ASP SEQRES 5 A 81 GLU ASP GLY GLU LYS GLU ALA ARG LEU ILE ARG ASN LEU SEQRES 6 A 81 ASN VAL ILE LEU ALA LYS TYR GLY LEU ASP GLY LYS LYS SEQRES 7 A 81 ASP ALA ARG HELIX 1 1 GLU A 23 ARG A 34 1 12 HELIX 2 2 PRO A 39 ASP A 65 1 27 HELIX 3 3 LYS A 73 TYR A 88 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20