HEADER LYASE 11-FEB-02 1GVF TITLE STRUCTURE OF TAGATOSE-1,6-BISPHOSPHATE ALDOLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAGATOSE-BISPHOSPHATE ALDOLASE AGAY; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TAGATOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.40; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYASE, ZINC. EXPDTA X-RAY DIFFRACTION AUTHOR D.R.HALL,W.N.HUNTER REVDAT 3 22-MAY-19 1GVF 1 REMARK REVDAT 2 24-FEB-09 1GVF 1 VERSN REVDAT 1 18-JUN-02 1GVF 0 JRNL AUTH D.R.HALL,C.S.BOND,G.A.LEONARD,C.I.WATT,A.BERRY,W.N.HUNTER JRNL TITL STRUCTURE OF TAGATOSE-1,6-BISPHOSPHATE ALDOLASE; INSIGHT JRNL TITL 2 INTO CHIRAL DISCRIMINATION, MECHANISM AND SPECIFICITY OF JRNL TITL 3 CLASS II ALDOLASES JRNL REF J.BIOL.CHEM. V. 277 22018 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11940603 JRNL DOI 10.1074/JBC.M202464200 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.127 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.131 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 6592 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 124490 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.113 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.117 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 4556 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 85521 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4189 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 658 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 4926.2 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 4167.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 15 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 47082 REMARK 3 NUMBER OF RESTRAINTS : 56585 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 ANGLE DISTANCES (A) : 0.029 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.025 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.047 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.062 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.097 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.055 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.086 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARP/WARP WITH REFMAC USED FIRST REMARK 3 FOLLOWED BY CNS THE FOLLOWING RESIDUES HAVE MISSING ATOMS DUE TO REMARK 3 DISORDER: SER A 151 LYS A 185 LYS A 188 ARG A 257 SER A 285 GLU REMARK 3 B 150 SER B 151 LYS B 185 LYS B 188 GLU B 216 REMARK 4 REMARK 4 1GVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-02. REMARK 100 THE DEPOSITION ID IS D_1290009376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.40 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282,1.283,1.127,1.030, REMARK 200 1.5418,0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR, RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1086028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIRECT METHODS REMARK 200 SOFTWARE USED: RSPS, MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: WAVELENGTHS QUOTED ARE FOR MAD PEAK, MAD INFLECTION POINT, REMARK 200 MAD REMOTE 1, MAD REMOTE2, INHOUSE REFINEMENT, ID14-EH2 HIGH RES REMARK 200 REFINEMENT DATA SETS RESPECTIVELY EXPERIMENTAL STATISTICS QUOTED REMARK 200 FOR COMBINED INHOUSE AND HIGH RES DATA SET USED FOR REFINEMENT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.40 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.32500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 103.33000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.32500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.33000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.32500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.23000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.33000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.32500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.23000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 100.46000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2053 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2060 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2047 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 THE ASYMMETRIC UNIT CONTAINS A DIMER WHICH BY MEANS OF A REMARK 400 CRYSTALLOGRAPHIC TWO-FOLD SYMMETRY OPERATOR FORMS THE REMARK 400 FUNCTIONAL TETRAMERIC ENZYME REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 140 REMARK 465 VAL A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASP A 144 REMARK 465 MET A 145 REMARK 465 SER A 146 REMARK 465 VAL A 147 REMARK 465 ASP A 148 REMARK 465 ALA A 149 REMARK 465 GLU A 150 REMARK 465 ALA A 286 REMARK 465 MET B 1 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 465 ASP B 144 REMARK 465 MET B 145 REMARK 465 SER B 146 REMARK 465 VAL B 147 REMARK 465 ASP B 148 REMARK 465 ALA B 149 REMARK 465 SER B 285 REMARK 465 ALA B 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 151 OG REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 SER A 285 OG REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 SER B 151 OG REMARK 470 LYS B 185 CG CD CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 63 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 92 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 198 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 261 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 137 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 198 CD - NE - CZ ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG B 198 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 198 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 198 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 220 NH1 - CZ - NH2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG B 220 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 220 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 257 CD - NE - CZ ANGL. DEV. = 21.1 DEGREES REMARK 500 ARG B 272 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 -174.18 -174.98 REMARK 500 ALA A 232 -58.08 -128.67 REMARK 500 ASN A 254 3.70 -151.76 REMARK 500 ASN B 27 -171.05 -176.20 REMARK 500 ILE B 176 19.55 -140.64 REMARK 500 ALA B 232 -58.70 -130.07 REMARK 500 ASN B 254 -4.68 -143.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2021 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A2023 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A2032 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A2054 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2120 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B2048 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B2051 DISTANCE = 6.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 288 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PGH A 287 O2 REMARK 620 2 PGH A 287 O1 73.2 REMARK 620 3 HIS A 83 NE2 96.2 169.1 REMARK 620 4 HIS A 180 NE2 124.5 89.1 95.3 REMARK 620 5 HIS A 208 ND1 103.4 92.4 92.4 130.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 289 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 209 O REMARK 620 2 ALA A 179 O 80.0 REMARK 620 3 GLY A 181 O 162.8 100.1 REMARK 620 4 PGH A 287 O4P 88.2 99.9 108.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 288 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PGH B 287 O1 REMARK 620 2 HIS B 208 ND1 92.2 REMARK 620 3 HIS B 180 NE2 86.9 134.4 REMARK 620 4 PGH B 287 O2 74.1 103.6 119.8 REMARK 620 5 HIS B 83 NE2 169.9 93.3 95.2 96.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 289 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PGH B 287 O3P REMARK 620 2 SER B 211 O 106.2 REMARK 620 3 GLY B 181 O 107.2 91.6 REMARK 620 4 ALA B 179 O 97.2 149.9 99.3 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" REMARK 700 AND "BA" IN EACH CHAIN ON SHEET RECORDS BELOW ARE ACTUALLY A 9- REMARK 700 STRANDED BARREL THIS IS REPRESENTED BY A 10-STRANDED SHEET IN REMARK 700 WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGH A 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGH B 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1288 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1290 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1291 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1295 DBREF 1GVF A 1 286 UNP P42908 AGAY_ECOLI 1 286 DBREF 1GVF B 1 286 UNP P42908 AGAY_ECOLI 1 286 SEQRES 1 A 286 MET SER ILE ILE SER THR LYS TYR LEU LEU GLN ASP ALA SEQRES 2 A 286 GLN ALA ASN GLY TYR ALA VAL PRO ALA PHE ASN ILE HIS SEQRES 3 A 286 ASN ALA GLU THR ILE GLN ALA ILE LEU GLU VAL CYS SER SEQRES 4 A 286 GLU MET ARG SER PRO VAL ILE LEU ALA GLY THR PRO GLY SEQRES 5 A 286 THR PHE LYS HIS ILE ALA LEU GLU GLU ILE TYR ALA LEU SEQRES 6 A 286 CYS SER ALA TYR SER THR THR TYR ASN MET PRO LEU ALA SEQRES 7 A 286 LEU HIS LEU ASP HIS HIS GLU SER LEU ASP ASP ILE ARG SEQRES 8 A 286 ARG LYS VAL HIS ALA GLY VAL ARG SER ALA MET ILE ASP SEQRES 9 A 286 GLY SER HIS PHE PRO PHE ALA GLU ASN VAL LYS LEU VAL SEQRES 10 A 286 LYS SER VAL VAL ASP PHE CYS HIS SER GLN ASP CYS SER SEQRES 11 A 286 VAL GLU ALA GLU LEU GLY ARG LEU GLY GLY VAL GLU ASP SEQRES 12 A 286 ASP MET SER VAL ASP ALA GLU SER ALA PHE LEU THR ASP SEQRES 13 A 286 PRO GLN GLU ALA LYS ARG PHE VAL GLU LEU THR GLY VAL SEQRES 14 A 286 ASP SER LEU ALA VAL ALA ILE GLY THR ALA HIS GLY LEU SEQRES 15 A 286 TYR SER LYS THR PRO LYS ILE ASP PHE GLN ARG LEU ALA SEQRES 16 A 286 GLU ILE ARG GLU VAL VAL ASP VAL PRO LEU VAL LEU HIS SEQRES 17 A 286 GLY ALA SER ASP VAL PRO ASP GLU PHE VAL ARG ARG THR SEQRES 18 A 286 ILE GLU LEU GLY VAL THR LYS VAL ASN VAL ALA THR GLU SEQRES 19 A 286 LEU LYS ILE ALA PHE ALA GLY ALA VAL LYS ALA TRP PHE SEQRES 20 A 286 ALA GLU ASN PRO GLN GLY ASN ASP PRO ARG TYR TYR MET SEQRES 21 A 286 ARG VAL GLY MET ASP ALA MET LYS GLU VAL VAL ARG ASN SEQRES 22 A 286 LYS ILE ASN VAL CYS GLY SER ALA ASN ARG ILE SER ALA SEQRES 1 B 286 MET SER ILE ILE SER THR LYS TYR LEU LEU GLN ASP ALA SEQRES 2 B 286 GLN ALA ASN GLY TYR ALA VAL PRO ALA PHE ASN ILE HIS SEQRES 3 B 286 ASN ALA GLU THR ILE GLN ALA ILE LEU GLU VAL CYS SER SEQRES 4 B 286 GLU MET ARG SER PRO VAL ILE LEU ALA GLY THR PRO GLY SEQRES 5 B 286 THR PHE LYS HIS ILE ALA LEU GLU GLU ILE TYR ALA LEU SEQRES 6 B 286 CYS SER ALA TYR SER THR THR TYR ASN MET PRO LEU ALA SEQRES 7 B 286 LEU HIS LEU ASP HIS HIS GLU SER LEU ASP ASP ILE ARG SEQRES 8 B 286 ARG LYS VAL HIS ALA GLY VAL ARG SER ALA MET ILE ASP SEQRES 9 B 286 GLY SER HIS PHE PRO PHE ALA GLU ASN VAL LYS LEU VAL SEQRES 10 B 286 LYS SER VAL VAL ASP PHE CYS HIS SER GLN ASP CYS SER SEQRES 11 B 286 VAL GLU ALA GLU LEU GLY ARG LEU GLY GLY VAL GLU ASP SEQRES 12 B 286 ASP MET SER VAL ASP ALA GLU SER ALA PHE LEU THR ASP SEQRES 13 B 286 PRO GLN GLU ALA LYS ARG PHE VAL GLU LEU THR GLY VAL SEQRES 14 B 286 ASP SER LEU ALA VAL ALA ILE GLY THR ALA HIS GLY LEU SEQRES 15 B 286 TYR SER LYS THR PRO LYS ILE ASP PHE GLN ARG LEU ALA SEQRES 16 B 286 GLU ILE ARG GLU VAL VAL ASP VAL PRO LEU VAL LEU HIS SEQRES 17 B 286 GLY ALA SER ASP VAL PRO ASP GLU PHE VAL ARG ARG THR SEQRES 18 B 286 ILE GLU LEU GLY VAL THR LYS VAL ASN VAL ALA THR GLU SEQRES 19 B 286 LEU LYS ILE ALA PHE ALA GLY ALA VAL LYS ALA TRP PHE SEQRES 20 B 286 ALA GLU ASN PRO GLN GLY ASN ASP PRO ARG TYR TYR MET SEQRES 21 B 286 ARG VAL GLY MET ASP ALA MET LYS GLU VAL VAL ARG ASN SEQRES 22 B 286 LYS ILE ASN VAL CYS GLY SER ALA ASN ARG ILE SER ALA HET PGH A 287 10 HET ZN A 288 1 HET NA A 289 1 HET EDO A1289 4 HET EDO A1290 4 HET EDO A1291 4 HET EDO A1292 4 HET EDO A1293 4 HET EDO A1294 4 HET PGH B 287 10 HET ZN B 288 1 HET NA B 289 1 HET EDO B1288 4 HET EDO B1289 4 HET EDO B1290 4 HET EDO B1291 4 HET EDO B1292 4 HET EDO B1293 4 HET EDO B1294 4 HET EDO B1295 4 HETNAM PGH PHOSPHOGLYCOLOHYDROXAMIC ACID HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PGH 2(C2 H6 N O6 P) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 NA 2(NA 1+) FORMUL 6 EDO 14(C2 H6 O2) FORMUL 23 HOH *658(H2 O) HELIX 1 1 THR A 6 GLY A 17 1 12 HELIX 2 2 ASN A 27 ARG A 42 1 16 HELIX 3 3 GLY A 52 ILE A 57 1 6 HELIX 4 4 ALA A 58 TYR A 73 1 16 HELIX 5 5 SER A 86 ALA A 96 1 11 HELIX 6 6 PRO A 109 GLN A 127 1 19 HELIX 7 7 ASP A 156 GLY A 168 1 13 HELIX 8 8 ASP A 190 VAL A 201 1 12 HELIX 9 9 PRO A 214 LEU A 224 1 11 HELIX 10 10 ALA A 232 ASN A 250 1 19 HELIX 11 11 ASP A 255 GLY A 279 1 25 HELIX 12 12 THR B 6 GLY B 17 1 12 HELIX 13 13 ASN B 27 ARG B 42 1 16 HELIX 14 14 THR B 50 ILE B 57 1 8 HELIX 15 15 ALA B 58 ASN B 74 1 17 HELIX 16 16 SER B 86 ALA B 96 1 11 HELIX 17 17 PRO B 109 GLN B 127 1 19 HELIX 18 18 GLU B 150 LEU B 154 5 5 HELIX 19 19 ASP B 156 GLY B 168 1 13 HELIX 20 20 ASP B 190 VAL B 201 1 12 HELIX 21 21 PRO B 214 LEU B 224 1 11 HELIX 22 22 ALA B 232 ASN B 250 1 19 HELIX 23 23 ASP B 255 GLY B 279 1 25 SHEET 1 AA10 VAL A 20 ASN A 24 0 SHEET 2 AA10 VAL A 226 VAL A 231 1 O THR A 227 N VAL A 20 SHEET 3 AA10 LEU A 205 LEU A 207 1 O LEU A 205 N THR A 227 SHEET 4 AA10 SER A 171 VAL A 174 1 O LEU A 172 N VAL A 206 SHEET 5 AA10 SER A 130 LEU A 135 1 O ALA A 133 N ALA A 173 SHEET 6 AA10 SER A 100 ILE A 103 1 O ALA A 101 N GLU A 132 SHEET 7 AA10 ALA A 78 HIS A 84 1 O LEU A 79 N SER A 100 SHEET 8 AA10 ILE A 46 GLY A 49 1 O LEU A 47 N HIS A 80 SHEET 9 AA10 VAL A 20 ASN A 24 1 O PRO A 21 N ILE A 46 SHEET 10 AA10 VAL A 20 ASN A 24 0 SHEET 1 BA10 VAL B 20 ASN B 24 0 SHEET 2 BA10 VAL B 226 VAL B 231 1 O THR B 227 N VAL B 20 SHEET 3 BA10 LEU B 205 LEU B 207 1 O LEU B 205 N THR B 227 SHEET 4 BA10 SER B 171 ALA B 173 1 O LEU B 172 N VAL B 206 SHEET 5 BA10 SER B 130 GLU B 134 1 O ALA B 133 N ALA B 173 SHEET 6 BA10 SER B 100 ILE B 103 1 O ALA B 101 N GLU B 132 SHEET 7 BA10 ALA B 78 HIS B 84 1 O LEU B 81 N MET B 102 SHEET 8 BA10 ILE B 46 GLY B 49 1 O LEU B 47 N HIS B 80 SHEET 9 BA10 VAL B 20 ASN B 24 1 O PRO B 21 N ILE B 46 SHEET 10 BA10 VAL B 20 ASN B 24 0 LINK O2 PGH A 287 ZN ZN A 288 1555 1555 1.99 LINK ZN ZN A 288 O1 PGH A 287 1555 1555 2.36 LINK ZN ZN A 288 NE2 HIS A 83 1555 1555 2.07 LINK ZN ZN A 288 NE2 HIS A 180 1555 1555 2.04 LINK ZN ZN A 288 ND1 HIS A 208 1555 1555 2.05 LINK NA NA A 289 O GLY A 209 1555 1555 2.57 LINK NA NA A 289 O ALA A 179 1555 1555 2.43 LINK NA NA A 289 O GLY A 181 1555 1555 2.34 LINK NA NA A 289 O4P PGH A 287 1555 1555 2.28 LINK ZN ZN B 288 O1 PGH B 287 1555 1555 2.31 LINK ZN ZN B 288 ND1 HIS B 208 1555 1555 2.07 LINK ZN ZN B 288 NE2 HIS B 180 1555 1555 2.04 LINK ZN ZN B 288 O2 PGH B 287 1555 1555 2.09 LINK ZN ZN B 288 NE2 HIS B 83 1555 1555 2.06 LINK NA NA B 289 O3P PGH B 287 1555 1555 2.39 LINK NA NA B 289 O SER B 211 1555 1555 2.56 LINK NA NA B 289 O GLY B 181 1555 1555 2.28 LINK NA NA B 289 O ALA B 179 1555 1555 2.45 SITE 1 AC1 4 HIS A 83 HIS A 180 HIS A 208 PGH A 287 SITE 1 AC2 6 ALA A 179 GLY A 181 TYR A 183 GLY A 209 SITE 2 AC2 6 SER A 211 PGH A 287 SITE 1 AC3 4 HIS B 83 HIS B 180 HIS B 208 PGH B 287 SITE 1 AC4 6 ALA B 179 GLY B 181 TYR B 183 GLY B 209 SITE 2 AC4 6 SER B 211 PGH B 287 SITE 1 AC5 17 ASP A 82 HIS A 83 ALA A 179 HIS A 180 SITE 2 AC5 17 GLY A 181 HIS A 208 GLY A 209 ALA A 210 SITE 3 AC5 17 SER A 211 ASN A 230 VAL A 231 ALA A 232 SITE 4 AC5 17 THR A 233 ZN A 288 NA A 289 HOH A2347 SITE 5 AC5 17 HOH A2348 SITE 1 AC6 5 SER A 2 SER A 70 HOH A2349 HOH A2350 SITE 2 AC6 5 EDO B1291 SITE 1 AC7 7 LEU A 9 PRO A 44 VAL A 45 PRO A 76 SITE 2 AC7 7 LEU A 77 ALA A 78 HOH A2117 SITE 1 AC8 3 ASP A 190 ARG A 193 GLU A 196 SITE 1 AC9 3 GLN A 32 GLU A 36 TYR A 73 SITE 1 BC1 4 TYR A 63 HIS A 95 ALA A 96 HOH A2352 SITE 1 BC2 7 LEU A 9 ASP A 12 TYR A 18 PRO A 44 SITE 2 BC2 7 ARG A 283 ILE A 284 HOH A2353 SITE 1 BC3 17 ASN B 24 ASP B 82 HIS B 83 ALA B 179 SITE 2 BC3 17 HIS B 180 GLY B 181 HIS B 208 GLY B 209 SITE 3 BC3 17 ALA B 210 SER B 211 ASN B 230 VAL B 231 SITE 4 BC3 17 ALA B 232 THR B 233 ZN B 288 NA B 289 SITE 5 BC3 17 HOH B2296 SITE 1 BC4 6 PRO B 44 VAL B 45 PRO B 76 LEU B 77 SITE 2 BC4 6 ALA B 78 HOH B2298 SITE 1 BC5 7 SER B 2 SER B 70 MET B 75 HOH B2299 SITE 2 BC5 7 HOH B2300 HOH B2301 HOH B2302 SITE 1 BC6 3 HIS B 95 ALA B 96 HOH B2303 SITE 1 BC7 6 ASN A 74 PRO A 76 EDO A1289 HIS B 95 SITE 2 BC7 6 GLN B 127 EDO B1292 SITE 1 BC8 4 ASN A 74 HIS B 95 GLU B 199 EDO B1291 SITE 1 BC9 4 SER B 106 PHE B 108 ARG B 137 HOH B2132 SITE 1 CC1 6 VAL B 114 LYS B 115 LYS B 118 HOH B2136 SITE 2 CC1 6 HOH B2140 HOH B2304 SITE 1 CC2 4 ARG B 91 ASP B 122 PHE B 123 HOH B2305 CRYST1 72.650 100.460 206.660 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009954 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004839 0.00000 MTRIX1 1 -0.027970 -0.999470 -0.016490 51.48536 1 MTRIX2 1 -0.999510 0.028190 -0.013660 49.71480 1 MTRIX3 1 0.014120 0.016100 -0.999770 87.68402 1