HEADER HUMAN PROGESTERONE RECEPTOR 19-JUN-00 1E3K TITLE HUMAN PROGESTERON RECEPTOR LIGAND BINDING DOMAIN IN COMPLEX WITH THE TITLE 2 LIGAND METRIBOLONE (R1881) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGESTERONE RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HUMAN PROGESTERONE RECEPTOR, LIGAND BINDING DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR P.M.MATIAS,P.DONNER,R.COELHO,M.THOMAZ,C.PEIXOTO,S.MACEDO,N.OTTO, AUTHOR 2 S.JOSCHKO,P.SCHOLZ,A.WEGG,S.BASLER,M.SCHAFER,U.EGNER,M.A.CARRONDO REVDAT 5 08-MAY-19 1E3K 1 REMARK REVDAT 4 28-FEB-18 1E3K 1 TITLE SOURCE JRNL REVDAT 3 24-FEB-09 1E3K 1 VERSN REVDAT 2 20-JAN-06 1E3K 1 COMPND REVDAT 1 14-JUN-01 1E3K 0 JRNL AUTH P.M.MATIAS,P.DONNER,R.COELHO,M.THOMAZ,C.PEIXOTO,S.MACEDO, JRNL AUTH 2 N.OTTO,S.JOSCHKO,P.SCHOLZ,A.WEGG,S.BASLER,M.SCHAFER,U.EGNER, JRNL AUTH 3 M.A.CARRONDO JRNL TITL STRUCTURAL EVIDENCE FOR LIGAND SPECIFICITY IN THE BINDING JRNL TITL 2 DOMAIN OF THE HUMAN ANDROGEN RECEPTOR. IMPLICATIONS FOR JRNL TITL 3 PATHOGENIC GENE MUTATIONS. JRNL REF J. BIOL. CHEM. V. 275 26164 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10840043 JRNL DOI 10.1074/JBC.M004571200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.0 REMARK 3 NUMBER OF REFLECTIONS : 8875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.343 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4027 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.044 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL 2 C-TERMINAL RESIDUES NOT SEEN IN REMARK 3 THE MAP REMARK 4 REMARK 4 1E3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1290005073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 12.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.15100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1A28 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION: 10% ISO-PROPANOL, REMARK 280 100MM SODIUM CITRATE 50MM HEPES PH 7.5. THE DROPS WERE SET UP REMARK 280 USING THE HANGING DROP METHOD AND WERE COMPOSED OF A 2:1 RATIO REMARK 280 OF PROTEIN AND RESERVOIR SOLUTIONS., PH 7.50, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.50550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 676 REMARK 465 PRO A 677 REMARK 465 GLY A 678 REMARK 465 GLN A 679 REMARK 465 ASP A 680 REMARK 465 ILE A 681 REMARK 465 LYS A 933 REMARK 465 SER B 676 REMARK 465 PRO B 677 REMARK 465 GLY B 678 REMARK 465 GLN B 679 REMARK 465 ASP B 680 REMARK 465 ILE B 681 REMARK 465 GLN B 682 REMARK 465 LYS B 932 REMARK 465 LYS B 933 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 682 CG CD OE1 NE2 REMARK 470 ASP A 704 CG OD1 OD2 REMARK 470 ASN A 705 CG OD1 ND2 REMARK 470 THR A 706 OG1 CG2 REMARK 470 LYS A 707 CG CD CE NZ REMARK 470 LYS A 790 CB CG CD CE NZ REMARK 470 GLU A 791 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 907 CD GLU A 907 OE2 -0.067 REMARK 500 SER B 735 CB SER B 735 OG -0.096 REMARK 500 GLU B 904 CD GLU B 904 OE2 0.066 REMARK 500 GLU B 907 CD GLU B 907 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 690 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 MET A 692 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 TYR A 700 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 THR A 716 CA - CB - OG1 ANGL. DEV. = -13.5 DEGREES REMARK 500 THR A 716 CA - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 LEU A 718 CB - CA - C ANGL. DEV. = 11.6 DEGREES REMARK 500 LEU A 721 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 LEU A 721 CA - CB - CG ANGL. DEV. = -16.3 DEGREES REMARK 500 LEU A 721 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 GLY A 722 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 GLU A 723 OE1 - CD - OE2 ANGL. DEV. = 9.8 DEGREES REMARK 500 GLU A 723 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 724 CG - CD - NE ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 724 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 724 NE - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 LEU A 726 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 TRP A 732 N - CA - CB ANGL. DEV. = 16.5 DEGREES REMARK 500 TRP A 732 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 TRP A 732 CD1 - NE1 - CE2 ANGL. DEV. = 9.9 DEGREES REMARK 500 TRP A 732 NE1 - CE2 - CZ2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 732 NE1 - CE2 - CD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 LYS A 734 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 LEU A 736 CB - CG - CD1 ANGL. DEV. = -11.1 DEGREES REMARK 500 PRO A 737 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 LEU A 742 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 ASP A 746 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 GLN A 747 OE1 - CD - NE2 ANGL. DEV. = -15.3 DEGREES REMARK 500 THR A 749 OG1 - CB - CG2 ANGL. DEV. = 19.3 DEGREES REMARK 500 LEU A 750 CB - CG - CD1 ANGL. DEV. = 11.6 DEGREES REMARK 500 ILE A 751 O - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 GLN A 752 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 GLN A 752 CG - CD - OE1 ANGL. DEV. = 16.7 DEGREES REMARK 500 GLN A 752 CG - CD - NE2 ANGL. DEV. = -19.1 DEGREES REMARK 500 TYR A 753 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 TYR A 753 CD1 - CG - CD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 TYR A 753 CG - CD1 - CE1 ANGL. DEV. = -11.9 DEGREES REMARK 500 TYR A 753 CD1 - CE1 - CZ ANGL. DEV. = 8.3 DEGREES REMARK 500 SER A 757 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 LEU A 758 CA - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 MET A 759 C - N - CA ANGL. DEV. = 22.7 DEGREES REMARK 500 MET A 759 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 VAL A 760 CA - CB - CG2 ANGL. DEV. = -9.7 DEGREES REMARK 500 VAL A 760 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 GLY A 764 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG A 766 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A 766 CD - NE - CZ ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 766 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR A 768 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 HIS A 770 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 HIS A 770 CE1 - NE2 - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 254 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 705 -51.48 55.61 REMARK 500 THR A 706 -90.36 -8.25 REMARK 500 ASP A 709 123.48 -31.33 REMARK 500 TRP A 765 -72.05 -49.11 REMARK 500 GLN A 787 -95.75 -46.76 REMARK 500 ARG A 788 -30.69 -14.11 REMARK 500 LYS A 790 -71.27 -50.15 REMARK 500 GLU A 791 114.98 -36.02 REMARK 500 SER A 792 -95.55 -67.51 REMARK 500 SER A 793 -63.83 38.28 REMARK 500 GLN A 812 76.23 42.64 REMARK 500 SER A 837 51.18 -90.80 REMARK 500 GLN A 838 -70.91 -38.08 REMARK 500 ARG A 859 -52.75 -141.15 REMARK 500 VAL A 863 -29.17 -155.22 REMARK 500 HIS A 881 -73.10 -45.17 REMARK 500 PHE A 895 -83.09 -55.95 REMARK 500 ILE A 896 -54.79 -27.83 REMARK 500 LYS A 919 -57.93 -29.73 REMARK 500 MET A 924 52.07 -99.54 REMARK 500 ILE B 684 109.20 170.20 REMARK 500 PRO B 685 132.52 -36.13 REMARK 500 ASN B 705 -11.59 58.40 REMARK 500 ASP B 709 123.14 -33.68 REMARK 500 GLN B 720 -70.53 -27.90 REMARK 500 VAL B 771 19.63 -147.60 REMARK 500 SER B 772 3.28 85.63 REMARK 500 TYR B 777 66.88 -100.10 REMARK 500 GLN B 787 -88.73 -54.51 REMARK 500 ARG B 788 -55.08 -18.89 REMARK 500 MET B 789 -93.09 -39.81 REMARK 500 LYS B 790 -62.00 -5.13 REMARK 500 GLU B 791 46.52 -106.65 REMARK 500 SER B 793 5.88 98.09 REMARK 500 PHE B 794 27.10 -157.65 REMARK 500 GLN B 812 49.77 39.70 REMARK 500 CYS B 820 -36.86 -34.61 REMARK 500 SER B 837 36.57 -86.92 REMARK 500 GLN B 840 -60.80 -26.60 REMARK 500 ARG B 859 -66.15 -140.37 REMARK 500 GLN B 860 78.90 -63.95 REMARK 500 VAL B 863 -31.43 -156.00 REMARK 500 ASP B 882 -70.98 -30.08 REMARK 500 PHE B 895 -71.82 -64.11 REMARK 500 GLU B 907 -63.24 -5.64 REMARK 500 ALA B 922 7.49 -64.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 792 SER A 793 -132.99 REMARK 500 LYS A 861 GLY A 862 147.16 REMARK 500 LEU A 929 PHE A 930 148.47 REMARK 500 LYS B 861 GLY B 862 149.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 687 -10.70 REMARK 500 PHE B 739 -12.03 REMARK 500 ALA B 915 11.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R18 A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R18 B1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A28 RELATED DB: PDB REMARK 900 HORMONE-BOUND HUMAN PROGESTERONE RECEPTOR LIGAND-BINDING DOMAIN DBREF 1E3K A 676 933 UNP P06401 PRGR_HUMAN 676 933 DBREF 1E3K B 676 933 UNP P06401 PRGR_HUMAN 676 933 SEQRES 1 A 258 SER PRO GLY GLN ASP ILE GLN LEU ILE PRO PRO LEU ILE SEQRES 2 A 258 ASN LEU LEU MET SER ILE GLU PRO ASP VAL ILE TYR ALA SEQRES 3 A 258 GLY HIS ASP ASN THR LYS PRO ASP THR SER SER SER LEU SEQRES 4 A 258 LEU THR SER LEU ASN GLN LEU GLY GLU ARG GLN LEU LEU SEQRES 5 A 258 SER VAL VAL LYS TRP SER LYS SER LEU PRO GLY PHE ARG SEQRES 6 A 258 ASN LEU HIS ILE ASP ASP GLN ILE THR LEU ILE GLN TYR SEQRES 7 A 258 SER TRP MET SER LEU MET VAL PHE GLY LEU GLY TRP ARG SEQRES 8 A 258 SER TYR LYS HIS VAL SER GLY GLN MET LEU TYR PHE ALA SEQRES 9 A 258 PRO ASP LEU ILE LEU ASN GLU GLN ARG MET LYS GLU SER SEQRES 10 A 258 SER PHE TYR SER LEU CYS LEU THR MET TRP GLN ILE PRO SEQRES 11 A 258 GLN GLU PHE VAL LYS LEU GLN VAL SER GLN GLU GLU PHE SEQRES 12 A 258 LEU CYS MET LYS VAL LEU LEU LEU LEU ASN THR ILE PRO SEQRES 13 A 258 LEU GLU GLY LEU ARG SER GLN THR GLN PHE GLU GLU MET SEQRES 14 A 258 ARG SER SER TYR ILE ARG GLU LEU ILE LYS ALA ILE GLY SEQRES 15 A 258 LEU ARG GLN LYS GLY VAL VAL SER SER SER GLN ARG PHE SEQRES 16 A 258 TYR GLN LEU THR LYS LEU LEU ASP ASN LEU HIS ASP LEU SEQRES 17 A 258 VAL LYS GLN LEU HIS LEU TYR CYS LEU ASN THR PHE ILE SEQRES 18 A 258 GLN SER ARG ALA LEU SER VAL GLU PHE PRO GLU MET MET SEQRES 19 A 258 SER GLU VAL ILE ALA ALA GLN LEU PRO LYS ILE LEU ALA SEQRES 20 A 258 GLY MET VAL LYS PRO LEU LEU PHE HIS LYS LYS SEQRES 1 B 258 SER PRO GLY GLN ASP ILE GLN LEU ILE PRO PRO LEU ILE SEQRES 2 B 258 ASN LEU LEU MET SER ILE GLU PRO ASP VAL ILE TYR ALA SEQRES 3 B 258 GLY HIS ASP ASN THR LYS PRO ASP THR SER SER SER LEU SEQRES 4 B 258 LEU THR SER LEU ASN GLN LEU GLY GLU ARG GLN LEU LEU SEQRES 5 B 258 SER VAL VAL LYS TRP SER LYS SER LEU PRO GLY PHE ARG SEQRES 6 B 258 ASN LEU HIS ILE ASP ASP GLN ILE THR LEU ILE GLN TYR SEQRES 7 B 258 SER TRP MET SER LEU MET VAL PHE GLY LEU GLY TRP ARG SEQRES 8 B 258 SER TYR LYS HIS VAL SER GLY GLN MET LEU TYR PHE ALA SEQRES 9 B 258 PRO ASP LEU ILE LEU ASN GLU GLN ARG MET LYS GLU SER SEQRES 10 B 258 SER PHE TYR SER LEU CYS LEU THR MET TRP GLN ILE PRO SEQRES 11 B 258 GLN GLU PHE VAL LYS LEU GLN VAL SER GLN GLU GLU PHE SEQRES 12 B 258 LEU CYS MET LYS VAL LEU LEU LEU LEU ASN THR ILE PRO SEQRES 13 B 258 LEU GLU GLY LEU ARG SER GLN THR GLN PHE GLU GLU MET SEQRES 14 B 258 ARG SER SER TYR ILE ARG GLU LEU ILE LYS ALA ILE GLY SEQRES 15 B 258 LEU ARG GLN LYS GLY VAL VAL SER SER SER GLN ARG PHE SEQRES 16 B 258 TYR GLN LEU THR LYS LEU LEU ASP ASN LEU HIS ASP LEU SEQRES 17 B 258 VAL LYS GLN LEU HIS LEU TYR CYS LEU ASN THR PHE ILE SEQRES 18 B 258 GLN SER ARG ALA LEU SER VAL GLU PHE PRO GLU MET MET SEQRES 19 B 258 SER GLU VAL ILE ALA ALA GLN LEU PRO LYS ILE LEU ALA SEQRES 20 B 258 GLY MET VAL LYS PRO LEU LEU PHE HIS LYS LYS HET R18 A1000 21 HET R18 B1000 21 HETNAM R18 (17BETA)-17-HYDROXY-17-METHYLESTRA-4,9,11-TRIEN-3-ONE HETSYN R18 METHYLTRIENOLONE; 17BETA-HYDROXY-17METHYL- HETSYN 2 R18 19NORANDROSTA-4,9,11-TRIEN-3-ONE; R1881 FORMUL 3 R18 2(C19 H24 O2) FORMUL 5 HOH *(H2 O) HELIX 1 1 PRO A 685 GLU A 695 1 11 HELIX 2 2 THR A 710 SER A 735 1 26 HELIX 3 3 GLY A 738 LEU A 742 5 5 HELIX 4 4 HIS A 743 VAL A 771 1 29 HELIX 5 5 PHE A 794 TRP A 802 1 9 HELIX 6 6 TRP A 802 GLN A 812 1 11 HELIX 7 7 SER A 814 LEU A 827 1 14 HELIX 8 8 SER A 837 GLY A 857 1 21 HELIX 9 9 VAL A 864 GLN A 897 1 34 HELIX 10 10 GLN A 897 SER A 902 1 6 HELIX 11 11 PRO A 906 ALA A 922 1 17 HELIX 12 12 PRO B 685 GLU B 695 1 11 HELIX 13 13 THR B 710 LEU B 736 1 27 HELIX 14 14 GLY B 738 LEU B 742 5 5 HELIX 15 15 HIS B 743 VAL B 771 1 29 HELIX 16 16 ASN B 785 GLU B 791 1 7 HELIX 17 17 PHE B 794 TRP B 802 1 9 HELIX 18 18 TRP B 802 GLN B 812 1 11 HELIX 19 19 SER B 814 LEU B 827 1 14 HELIX 20 20 SER B 837 GLY B 857 1 21 HELIX 21 21 VAL B 864 GLN B 897 1 34 HELIX 22 22 GLN B 897 SER B 902 1 6 HELIX 23 23 PRO B 906 ALA B 922 1 17 SHEET 1 A 2 LEU A 776 ALA A 779 0 SHEET 2 A 2 LEU A 782 LEU A 784 -1 O LEU A 782 N ALA A 779 SHEET 1 B 2 THR A 829 ILE A 830 0 SHEET 2 B 2 LYS A 926 PRO A 927 -1 O LYS A 926 N ILE A 830 SHEET 1 C 2 LEU B 776 ALA B 779 0 SHEET 2 C 2 LEU B 782 LEU B 784 -1 O LEU B 782 N ALA B 779 SHEET 1 D 2 THR B 829 ILE B 830 0 SHEET 2 D 2 LYS B 926 PRO B 927 -1 O LYS B 926 N ILE B 830 SITE 1 AC1 11 LEU A 718 ASN A 719 LEU A 721 GLN A 725 SITE 2 AC1 11 MET A 759 ARG A 766 PHE A 778 MET A 801 SITE 3 AC1 11 CYS A 891 MET A 909 HOH A2001 SITE 1 AC2 8 LEU B 718 ASN B 719 GLN B 725 MET B 759 SITE 2 AC2 8 ARG B 766 PHE B 778 TYR B 890 CYS B 891 CRYST1 58.402 65.011 71.181 90.00 95.65 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017120 0.000000 0.001690 0.00000 SCALE2 0.000000 0.015380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014120 0.00000 MTRIX1 1 0.529830 0.829730 0.175610 3.26396 1 MTRIX2 1 0.836110 -0.545710 0.055790 -13.18369 1 MTRIX3 1 0.142120 0.117260 -0.982880 32.57034 1